TCONS_00002091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002091
Unique NameTCONS_00002091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002091 ID=TCONS_00002091|Name=TCONS_00002091|organism=Clytia hemisphaerica|type=transcript|length=2602bp
gctctctttttttttgttatttttcaataaagaaagAAACAGGGTCTTTT
GGAACAGAAGAGAGAAAGGATCGAAGTAAAGACATATGATCCTACCACAC
AACGATCACATTACCCAAGATTCCAATCGACAGATTAGAGGTGCCACTGC
ATCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGACAACCATGGAAC
AAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTGGTTGACTCCGCCACC
TCCACAGCTAACCCAGCTCCGTATTACACATACAGCCAAGACCCTTCATC
CTACACTGATTACTACAGATCTAGTGTTTACGCTAGTCGTAACGTACCGC
CCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCGTATTACGCTGCTCCG
TACGCGGATCCTCATTACCACCACCATTACTACTCCCAGTATCAAATGCT
CAACATGAACACACAACAAAAAGAGTTAGTCAAACCACCTTATTCATACA
TCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCAGAAAAAAAACTAACA
CTCAGCGGCATTTATCAATTTATTATGGATCGCTTCCCATATTACCGTCA
AAACAAACAAGGTTGGCAGAATTCTATCCGTCACAATCTCAGCTTGAACG
AATGTTTCTTGAAAGTTCCCAGAGATGATAATAAACCAGGAAAAGGTAGT
TATTGGGCTTTGGATCCTGATTCCATCAATATGTTTGAGAATGGGAGTTA
CTTACGACGACGCAGGCGATTCAGGAAGAAAGACATCAAGAAGGAGGATA
TGGGAGAGGGAGATGACCTccttgatgaagaagaagaagccaAGGTATGG
GCTAACACTACCCATGGTCGTATGCATCCACATCCTGAACAAACCCTTCA
TCTAGTAGGAGAAGGACGACAACCACAATTTCTTCCACCTAAAGAAGACc
atcaaaagaaaatcatgCATCCACATCAACAGAGTCTCCCAACCTCACCA
TCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGACCATTACTTTAGGCCA
GGAACAACCTGCCATCCACCCTGCAGCTAAGATGAACACACAACAACCTC
ATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAGCATTCTGAAACAACT
CCTAAAAACGGGGAAGTCACAGAAGAAGATAAACTGAATCAAGACAAGGA
TAAAGCGACACCACAATCCGTTCATTTATACGAAAACGGACAACGGGCCA
CTTATCCGGAAAGCACATTAACATATACCAATTTAGACTCGAACTTTTTA
AGTTATAATAACTTGAACTATAGTTTTGCAGACACGAGTACCTCAGTGAC
GGCTGCACGTTACGCGGCTGAACGAGGTCTCACGGGAGCTCCGCCACCTC
TTGATTTTATAACTCGTGGAGCACCAACCGATATTTCAAGCGTTGTACAA
CCTCGTGGTATGGAAGGCACAGGATCGGCAGCATCTCGTCTCTCCGAACT
TGCATCGTCATCTACCACCGACCTTTACTCTGTATCAACCTCTCGATTCA
TGTCACCACCCAACAGTCCTTTCCCTAATGGTGAGAGTCGAGACTTCTAC
CTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCACGTTCAACGCAGTACC
GGGGACCACTGACCAAGACCGTATTACATCTTTCTACTCTCCCTATCGCT
CATCAACGACATCCGCCTACCAACAGTATTAATGCTAAGAGACACTTTAA
CTAAATGAACTTGTTCATTCCATATAGatgaaatttatttaaaatttata
caaaaaagagaaatttaagCTCAGGATTGAAacgacattttttaaatgct
aGATCCGCAACtgtttctttacttttttagaataatttcttcttcatatt
ttttttttgaaaacaatatatttttttccgcagcaattttatatatatat
attttacctacaatgttatttattttaataaagCCCACGTGGGAAGCTTT
ATACCTAGAATATAAtagtaaaaaaaactttttgcatatattttttgaat
tagatttttttGTGAACTTTACTCTCTTGTCAAAAACCTTATCTTTCTTA
AACCCTAGAACAACTCTGATACCCAAATTAGTCGTCGTTTTCAGGGTTGG
CTTAAGTAAGTGCTTGGtctttcaaaataacaaaaacaactcCAGTTTAA
AAGCTCATACGATTAATTTAAGACCTTGTTTCCAACTTTGCAGAATACAC
TactggaattttttttacccctCACCAATTTAGAACAGTTCATTTTCTAC
CTTAAACGATTTTTACTGTACATactcaaaaaatattctcaactcAACGA
AAAACAGGCCTTTTTAAGGTCCTCTTAGAAGGGAAAtgttattttgttta
aaaatgttgGCCTCTTACATTTGTTTAGTCTCAAATTAGGAAAgctttgt
ttttgtgtttttgcaACCAATATTATTTATTTGAGCAGCGAAAAGAGTAA
CAAAAACATTAGAAAAGGCAATATACACAAGCTAGAGATCAGTACAACAT
TACTTTTCAGAAAGGCTAGATGAGGATAGACTTTTCTTCATATTGAGGTT
TA
Run BLAST on NCBI

protein sequence of FoxC Forhead domain containing protein

>TCONS_00002091-protein ID=TCONS_00002091-protein|Name=FoxC Forhead domain containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp
MILPHNDHITQDSNRQIRGATASSAPETTPTTSATTMEQVPFTGAASTTV
VDSATSTANPAPYYTYSQDPSSYTDYYRSSVYASRNVPPPSSQYANVASP
YYAAPYADPHYHHHYYSQYQMLNMNTQQKELVKPPYSYIALISMAIQSSP
EKKLTLSGIYQFIMDRFPYYRQNKQGWQNSIRHNLSLNECFLKVPRDDNK
PGKGSYWALDPDSINMFENGSYLRRRRRFRKKDIKKEDMGEGDDLLDEEE
EAKVWANTTHGRMHPHPEQTLHLVGEGRQPQFLPPKEDHQKKIMHPHQQS
LPTSPSLQEATPGGGQTITLGQEQPAIHPAAKMNTQQPHPEGTDQEGDLE
HSETTPKNGEVTEEDKLNQDKDKATPQSVHLYENGQRATYPESTLTYTNL
DSNFLSYNNLNYSFADTSTSVTAARYAAERGLTGAPPPLDFITRGAPTDI
SSVVQPRGMEGTGSAASRLSELASSSTTDLYSVSTSRFMSPPNSPFPNGE
SRDFYLNAAAAASAYSTFNAVPGTTDQDRITSFYSPYRSSTTSAYQQY
Run BLAST on NCBI

transcript from alignment at sc0000018:928747..937292+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002091 ID=TCONS_00002091|Name=TCONS_00002091|organism=Clytia hemisphaerica|type=transcript|length=8546bp|location=Sequence derived from alignment at sc0000018:928747..937292+ (Clytia hemisphaerica)
gctctctttttttttgttatttttcaataaagaaagAAACAGGGTCTTTT GGAACAGAAGAGAGAAAGGATCGAAGTAAAGACATATGATCCTACCACAC AACGATCACATTACCCAAGATTCCAATCGACAGATTAGAGGTATGTTCTT AACAGCTCATTTTTCTTATTCTcgtttttttgtttctattttaCCGCGCA CGCATCAAGCGCACGCGCGCgacttgttttatttttttattgtctaCGCA TCGATTGTTTGTTTGTGTATAGTGGCCAACCCtgtcttctttttttgtta AAGATGTCTTGTTTATTGCCATTTGCATATGTATTAGGAAATGACCATAG CAtacaaataaagaattttcttAAACGCGATCTGTAACAACACTAAACAA GAACGATGGTCAAAGAAAACACAGAAAAGGGTATTAGATTTTTctgttca tatttttttttttcgccaGATGTTTATTTTTGATACATCGGCTCCCTTTT TTTTGCGAGAAAtctattgtttttgtttgtcccaaaattttattttcgta TTATTAAATTTGGATAAACTTTAATTCCTTCTTGTTGCATTTTCAATCAG AATTttattttcccataaaattAACATCAGTGTTTTTTaaggaaactttt ttttcaactctCGATCTTTCTAACGTTTGACTCTTAAATCAAGTTTACTA TTTAAGAacttaaaacttttcaaatattgtttCGATAAACTTCAATTTCT TGgattttaaattgtttatttGTTAACTCTAGATGTTTTTGGAGCCTTTT GTGAGGTTTAATCATGTTATTGATTGACGATAAAGTGAAATGGGGATGGA cttttttgacactttcaaaTGTCCCAACCTTTTAATATATTAAAGTATCG AATTTATGGAAAGTGCTCCATTTTAAGATAGTATTCGCCAAGTTGTTGTA TCACACGCTTTCAAAGTttataatcaaaacaaagtatAGTATTAAATCAA CATGCTCCTTTCATCGATGCTATATAGTCCCTCACAAAGAGCATTGCTTa cattaaataaataaataaacatatAATTTAAGCTCAATAGTATAAGATAA ATATAAAATGTTATCTTTAAGTCTGGTAGGTTATGAAGGCACGTTAGATT TAATAGTTCTGTCAACGAATTTTGACATTTAAATTATACCTTAGAAAAAC AAAACTCTAAACTATAATGGATAATAATGTTTATGTTGCATTCTTGTAGA CCGTGTATACAAAGGTTATCCAGGTCTTTGCAAGGACCAATCCTTTTGTC TGGTGATGTTTTTAAACATGATTTTTCGATGTTTTAACACTATCTTATAT ACCTCaaccaaaatattattttagttTTGTGTTTCATACGTTTCTCTata tttttgtgtttactttacGATCGATTGCCTTTCTACTACCCCTTTTTATA AACCATCCTATATCTTGACTATGTAAATAAAGTCATAAATGAAAGGACAA ATTATGATTTCTACAAGTGTATAAGAAATCCTTCAATATATAAAACCAAT TTCAGTTTGTCGTATATAGAAAAATCGAGACCACATTCTCACAGACTTTC TTAACGCGCGTTTTTTCGCTCATGTGATTTTCTTTGAGACGCTATCGTAT TTCTTTCTCCTCGGaaacagagaatttttttttcattccatgCGTGTTGT GTGTTCGGTTGATTCGACTCTCTAATGGCTTGTAAATTCTTTTCCTTAAA TGCAACGAGTTGTGTCTTTCAAACGTCCTCTCTGTGCGTGTCTGTCTTTT TTGGGTCTTCGTCAtcaattttgtgattttttttgctacTGTACTGATTT TGACTGCTCGTTACGCAGATCGATCTTTCACTCAAAGACCATTGATAAAG ATTTTTCATGTAAATACTTTCAAAACTCCACACGTCTCCCGATTGAATAC GTGAATACCgtaagaaaattgtaaagaaaaactaattttggtgagagCTT ATTTTAGGGAACGACAGAATAAAAACCCTTACGGAAACAAAATGCTcgta ttccattgaaaacgaatATAGAATGCATTAAAATAGAATAAACTTCTAGG TTCAAAACTTTAATGAATTTCTAATTCATTGGGTATCaaaatgtatttaa attctAGACTTTAAATTACATATAAATGAGCGATTTAGACTAAATTTCGA ATgacttaaaaaatttcattttgaagacaAATTATTTTTGCGAGGAagca ttttaattttggcgaatatGATTTACTCAAAGGAATTTGGACTCgctaaa atttaccaaaatttattcttatataGAGCCCCTTTTACAGTAGTTGGCAT CGTATTTTAAATGATTGGCCATGTTAAATTTGTTTCAGAAAGGAATTTTC ATCCCCTTAAAAGGTCTAAATAGTTTGTAAAATTATCCTTATGGAACGAG CCAAACTTCTTAAAAGTTGTAAAAGTACTTCACAAGAAATGGTGATAAGC TATTTTTAGGAGAGCGTAAGAAATCTTTGAACTTTCATTGAAACGTCATT CGGAATCGtgtatgtatttttttctcCGTTTTTTTTAAGTCACGTCGCGT TTTGCTTAATTTTCGGACCCAGACCATTCTCCTTAACTTgaacctcttta actcgaatgcctccttaactcgaacaagctttATCGTCCTTGCAgctaac aatgccttataaaccatactctataactcgaaaatttccttaaatcgaac aaatttgtgttccccatgCGCGCTCGATGAGTTATATGGAAATTCCATGG GGGCCCCCTCCATTGTATTTAAAGAATATCATATTTTGCGATGAGGTCAT TTAAATAATTCTTCACTGAGCAGAATAATCAGAGTCTCGTTTAATATTTT GCTTGCCACCCTGACTTTTACCGGCCTTCTctgatatgaaaaaaaataga tttctgtCATTTTTCTCTCTGGTAGCTTCAGGGTATTTAGCTTTGCAATG GTCACGATATATAAGATTATTGTAAACATGAAAGAAATACAAGTCATTTA AATTTCtaatggaaaatattttacccGGAAAAATTTTGCTGAAAGTATAA GGGGTCTTTttttattctgaaaaatttaaggGGAATCTAAAAATTGGATG ATGATTAAAATGTAGACAAGTTTGTTGATTCACACTAATACGGGGAAAAC ACTTGAAAACATAGCATACTTTCGTATTATGACCCATATAACAAACACTT GATATAATACTATCGTATGCTTGTTATTAATGTTGTATCTATTTGTTATA CCACTGACAAATTGATGCAAATAGTATATTCAATTCTAGGTAAATTTTGT CCCATTCCAACTTTTGAAATAATGATTTGTCAGAAGGTCTTTTTCATAGG GACCATTTTACTATCAGTATCACAGCCATTTAGCCCTTTTTGCTACAGGC CAGTAAACAATAAGTGGACAACTTCCAAGCTTTCGAGAATTTCTATACTT ATAAACATTTGTCtaaatttgatatgaaaaatgATCGAAATTAAACGTCA AACTTTCAATGTCTTATCCATCGTCTACGAAGCGAGACAAAATTCACGGA AGATAATCTTTTAGAAAGGAAATGGGTGTGAAAAGAGACGACACTAGAAT TGGAATGTTCTACTTAATCCTGTGGATTATTTACGCGTCTTTTCTTGTCT TACCGCACTTTTTGGCAGTTTTACCTTTTCGTGACTTTTCTATTTCACTT TTCGTTATCTACTCCATCACATATTGAATTATAACCCGAATTATTTAAGT CAGAAATTATGACAgtttgattttgtaatttcctaccatAAATATCTTAT TCCGTCAATTATCTAGATTATTATTAGGATACTTTTGAGACATTCCTCTA ACGAAAAAAAATCACGTCAAAAGTCAAGTGTCTGAATGGCATTGTCGGCT TAGGAAATATTTTCAACGAAGGTGTGCACCTTTTCCACTGTGTATACCAT ATATGTCTCATGGAACACCCCTTTGCAGGTGAAAAAACGTCACATCAACT TCTATAAACACGTCACTAAGATAAACAAAATTTACGCACATTTAAATTCT TGAGAACGCGCCAGTCCATGGAAGCTCAGATCCGTGATTTTTGGTAAATA TCCTACTTTAAGATCAACGGgatattattatccatatagcggtcattaag taagccattaaagattcgaacggcgggcggtattgaaaggttctatgact caaatagtcatatccgcgctgagaaaactaaggcgtcgcgcttcagaggg ctgaaataccattaaccgccctggttatagggcgataacgtcatttgcga cccgctcggaactttattgaagtcgttgcattgaagcgaaaagactaaac taacgtcagaaaaaaacactttttggtcatttgcgacccgctcgcaaggg tactcaaaacttgttaaagtccttgcattgaagcgaaaagacttggccga cgctagaaaaaaacgttgtttgaatttccaatatggataataatagtaat agcgttaagctttcgttcgttgttgtcattaattctgcccttgcagtttg attattagccctctagtgccatttgcgccctccgcttcgcgtcgggccca aatgacactctcgggctaataattaaactgcgcgggcagaaaataacaac aacgacctcaaactgaacgctattgttataataTCAAACACTCTTAAATC ACAGATTAATGCATTATAAGTCATTGGTTAAATACGGGAATATGAACATA ATAAAACTTGTAATACTCCTTAACTATTGTCAACTCGGAATCAATAATCA GTCAAAACAAATTATTAACTTTTTctatttgaccaattttgtctTTTTGC GGGACGCGGAATCAAGAGAGAAAAGGTGCGAATAGTATAGGTAAACAAAA CTGATATTAAAACCTATTATCAAAGTGTCAATTAGGTAATTAAACATAAT TAaagtaagaaaatattaaatcaTTAAATATATaatctgaaaaatggcaa aataagAAAGAGGGGGAAATAAGGGGAAAGTAACGAATAACACAAAACCA ACAAGACTCATTTGTAATCAATAAGAATGACTTCCATTTTGTGGGGTGTT AATTTTTTCCTTCACGCGTCGTCGGCTTTTTGTCAGTGTCATCTAAGTTC CGCTATATCAAAAAGGCTAGTTCACACTGAGAGCCGTATTCACACAGCTT ACACATAAATCTGAACTGAGTATTCAACTCACACTTTTATATACTGGCGG AGGAAAAGAAAGGGCTTTTAGTGATAAAGGAACTCACACATTGAGCTTTT CATCATTAATCAACTGATAATTTTACTTAATTTGTGTTGCTTCACTCACA TGAATCACTAGAATTTTGCATATTGAAATCACTTTTAAATTTACCTTGTG ATTGCTGGTTGGAAAGAAAAACTAACTTTTGAGTAAGatcatttaatttt caaaatagaagtTGTTTTTTGTTATTCTTGCTAAACTTTATATTAGATCC TGTATTCTACCACGTATAGAATTCTGACtgattattttttcttaattttt ttctgaacttaAATTCAAAACACAGGGCATGTTTTCAAAGAATACATTTC AGTGTCAGAAGGTTCTCAATATCACTTCTTGTTTTCATTCTTAATAATCT TGAACCAAATGATCGAGATTCTGACTGATTGATGTCAAAAGTTTATTACT TTAAAACTAACATTTCCCGCTTCgtatttttttctataatttttcatttt tatcaagtTATAAAATCACCACAAACTTTTAAAACTCACTCGAACGACGT TAAATAACGTTAAAAGATTGAGCAAATCTTGTTAAGTTTTGGCATTGTCA AATTCATGTCATTATAGTTGCGCGCTTGTTAGGTGCTATCTATTCAAAtt aattgtgtttttttttgtttgatcagtattaaaaactaaatattttcaat tttaatttgttCTAATTTTTCAGGTGCCACTGCATCGTCAGCGCCAGAGA CGACTCCTACGACATCTGCGACAACCNTTTTCAGGTGCCCCTGCATCGTC AGCGCCAGAGACGACTCCTACGACATCTGCGACAACCATGGAACAAGTCC CTTTCACCGGCGCTGCCTCCACCACGGTGGTTGACTCCGCCACCTCCACA GCTAACCCAGCTCCGTATTACACATACAGCCAAGACCCTTCATCCTACAC TGATTACTACAGATCTAGTGTTTACGCTAGTCGTAACGTACCGCCCCCTT CGAGTCAGTACGCGAACGTCGCTAGTCCGTATTACGCTGCTCCGTACGCG GATCCTCATTACCACCACCATTACTACTCCCAGTATCAAATGCTCAACAT GAACACACAACAAAAAGAGTTAGTCAAACCACCTTATTCATACATCGCTC TCATCTCAATGGCTATCCAAAGCTCGCCAGAAAAAAAACTAACACTCAGC GGCATTTATCAATTTATTATGGATCGCTTCCCATATTACCGTCAAAACAA ACAAGGTTGGCAGAATTCTATCCGTCACAATCTCAGCTTGAACGAATGTT TCTTGAAAGTTCCCAGAGATGATAATAAACCAGGAAAAGGTAGTTATTGG GCTTTGGATCCTGATTCCATCAATATGTTTGAGAATGGGAGTTACTTACG ACGACGCAGGCGATTCAGGAAGAAAGACATCAAGAAGGAGGATATGGGAG AGGGAGATGACCTccttgatgaagaagaagaagccaAGGTATGGGCTAAC ACTACCCATGGTCGTATGCATCCACATCCTGAACAAACCCTTCATCTAGT AGGAGAAGGACGACAACCACAATTTCTTCCACCTAAAGAAGACcatcaaa agaaaatcatgCATCCACATCAACAGAGTCTCCCAACCTCACCATCCTTA CAAGAGGCAACTCCCGGTGGTGGGCAGACCATTACTTTAGGCCAGGAACA ACCTGCCATCCACCCTGCAGCTAAGATGAACACACAACAACCTCATCCTG AGGGCACAGACCAGGAAGGAGACTTGGAGCATTCTGAAACAACTCCTAAA AACGGGGAAGTCACAGAAGAAGATAAACTGAATCAAGACAAGGATAAAGC GACACCACAATCCGTTCATTTATACGAAAACGGACAACGGGCCACTTATC CGGAAAGCACATTAACATATACCAATTTAGACTCGAACTTTTTAAGTTAT AATAACTTGAACTATAGTTTTGCAGACACGAGTACCTCAGTGACGGCTGC ACGTTACGCGGCTGAACGAGGTCTCACGGGAGCTCCGCCACCTCTTGATT TTATAACTCGTGGAGCACCAACCGATATTTCAAGCGTTGTACAACCTCGT GGTATGGAAGGCACAGGATCGGCAGCATCTCGTCTCTCCGAACTTGCATC GTCATCTACCACCGACCTTTACTCTGTATCAACCTCTCGATTCATGTCAC CACCCAACAGTCCTTTCCCTAATGGTGAGAGTCGAGACTTCTACCTAAAT GCGGCCGCTGCAGCCTCAGCTTACAGCACGTTCAACGCAGTACCGGGGAC CACTGACCAAGACCGTATTACATCTTTCTACTCTCCCTATCGCTCATCAA CGACATCCGCCTACCAACAGTATTAATGCTAAGAGACACTTTAACTAAAT GAACTTGTTCATTCCATATAGatgaaatttatttaaaatttatacaaaaa agagaaatttaagCTCAGGATTGAAacgacattttttaaatgctaGATCC GCAACtgtttctttacttttttagaataatttcttcttcatatttttttt ttgaaaacaatatatttttttccgcagcaattttatatatatatatttta cctacaatgttatttattttaataaagCCCACGTGGGAAGCTTTATACCT AGAATATAAtagtaaaaaaaactttttgcatatattttttgaattagatt tttttGTGAACTTTACTCTCTTGTCAAAAACCTTATCTTTCTTAAACCCT AGAACAACTCTGATACCCAAATTAGTCGTCGTTTTCAGGGTTGGCTTAAG TAAGTGCTTGGtctttcaaaataacaaaaacaactcCAGTTTAAAAGCTC ATACGATTAATTTAAGACCTTGTTTCCAACTTTGCAGAATACACTactgg aattttttttacccctCACCAATTTAGAACAGTTCATTTTCTACCTTAAA CGATTTTTACTGTACATactcaaaaaatattctcaactcAACGAAAAACA GGCCTTTTTAAGGTCCTCTTAGAAGGGAAAtgttattttgtttaaaaatg ttgGCCTCTTACATTTGTTTAGTCTCAAATTAGGAAAgctttgtttttgt gtttttgcaACCAATATTATTTATTTGAGCAGCGAAAAGAGTAACAAAAA CATTAGAAAAGGCAATATACACAAGCTAGAGATCAGTACAACATTACTTT TCAGAAAGGCTAGATGAGGATAGACTTTTCTTCATATTGAGGTTTA

Coding sequence (CDS) from alignment at sc0000018:928747..937292+

>TCONS_00002091 ID=TCONS_00002091|Name=TCONS_00002091|organism=Clytia hemisphaerica|type=CDS|length=4941bp|location=Sequence derived from alignment at sc0000018:928747..937292+ (Clytia hemisphaerica)
ATGATCCTACCACACAACGATCACATTACCCAAGATTCCAATCGACAGAT
TAGAGGTGCCACTGCATCGTCAGCGCCAGAGACGACTCCTACGACATCTG
CGACAACCATGGAACAAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTG
GTTGACTCCGCCACCTCCACAGCTAACCCAGCTCCGTATTACACATACAG
CCAAGACCCTTCATCCTACACTGATTACTACAGATCTAGTGTTTACGCTA
GTCGTAACGTACCGCCCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCG
TATTACGCTGCTCCGTACGCGGATCCTCATTACCACCACCATTACTACTC
CCAGTATCAAATGCTCAACATGAACACACAACAAAAAGAGTTAGTCAAAC
CACCTTATTCATACATCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCA
GAAAAAAAACTAACACTCAGCGGCATTTATCAATTTATTATGGATCGCTT
CCCATATTACCGTCAAAACAAACAAGGTTGGCAGAATTCTATCCGTCACA
ATCTCAGCTTGAACGAATGTTTCTTGAAAGTTCCCAGAGATGATAATAAA
CCAGGAAAAGGTAGTTATTGGGCTTTGGATCCTGATTCCATCAATATGTT
TGAGAATGGGAGTTACTTACGACGACGCAGGCGATTCAGGAAGAAAGACA
TCAAGAAGGAGGATATGGGAGAGGGAGATGACCTccttgatgaagaagaa
gaagccaAGGTATGGGCTAACACTACCCATGGTCGTATGCATCCACATCC
TGAACAAACCCTTCATCTAGTAGGAGAAGGACGACAACCACAATTTCTTC
CACCTAAAGAAGACcatcaaaagaaaatcatgCATCCACATCAACAGAGT
CTCCCAACCTCACCATCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGAC
CATTACTTTAGGCCAGGAACAACCTGCCATCCACCCTGCAGCTAAGATGA
ACACACAACAACCTCATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAG
CATTCTGAAACAACTCCTAAAAACGGGGAAGTCACAGAAGAAGATAAACT
GAATCAAGACAAGGATAAAGCGACACCACAATCCGTTCATTTATACGAAA
ACGGACAACGGGCCACTTATCCGGAAAGCACATTAACATATACCAATTTA
GACTCGAACTTTTTAAGTTATAATAACTTGAACTATAGTTTTGCAGACAC
GAGTACCTCAGTGACGGCTGCACGTTACGCGGCTGAACGAGGTCTCACGG
GAGCTCCGCCACCTCTTGATTTTATAACTCGTGGAGCACCAACCGATATT
TCAAGCGTTGTACAACCTCGTGGTATGGAAGGCACAGGATCGGCAGCATC
TCGTCTCTCCGAACTTGCATCGTCATCTACCACCGACCTTTACTCTGTAT
CAACCTCTCGATTCATGTCACCACCCAACAGTCCTTTCCCTAATGGTGAG
AGTCGAGACTTCTACCTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCAC
GTTCAACGCAGTACCGGGGACCACTGACCAAGACCGTATTACATCTTTCT
ACTCTCCCTATCGCTCATCAACGACATCCGCCTACCAACAGTATTAAATG
ATCCTACCACACAACGATCACATTACCCAAGATTCCAATCGACAGATTAG
AGGTGCCACTGCATCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGA
CAACCATGGAACAAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTGGTT
GACTCCGCCACCTCCACAGCTAACCCAGCTCCGTATTACACATACAGCCA
AGACCCTTCATCCTACACTGATTACTACAGATCTAGTGTTTACGCTAGTC
GTAACGTACCGCCCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCGTAT
TACGCTGCTCCGTACGCGGATCCTCATTACCACCACCATTACTACTCCCA
GTATCAAATGCTCAACATGAACACACAACAAAAAGAGTTAGTCAAACCAC
CTTATTCATACATCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCAGAA
AAAAAACTAACACTCAGCGGCATTTATCAATTTATTATGGATCGCTTCCC
ATATTACCGTCAAAACAAACAAGGTTGGCAGAATTCTATCCGTCACAATC
TCAGCTTGAACGAATGTTTCTTGAAAGTTCCCAGAGATGATAATAAACCA
GGAAAAGGTAGTTATTGGGCTTTGGATCCTGATTCCATCAATATGTTTGA
GAATGGGAGTTACTTACGACGACGCAGGCGATTCAGGAAGAAAGACATCA
AGAAGGAGGATATGGGAGAGGGAGATGACCTccttgatgaagaagaagaa
gccaAGGTATGGGCTAACACTACCCATGGTCGTATGCATCCACATCCTGA
ACAAACCCTTCATCTAGTAGGAGAAGGACGACAACCACAATTTCTTCCAC
CTAAAGAAGACcatcaaaagaaaatcatgCATCCACATCAACAGAGTCTC
CCAACCTCACCATCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGACCAT
TACTTTAGGCCAGGAACAACCTGCCATCCACCCTGCAGCTAAGATGAACA
CACAACAACCTCATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAGCAT
TCTGAAACAACTCCTAAAAACGGGGAAGTCACAGAAGAAGATAAACTGAA
TCAAGACAAGGATAAAGCGACACCACAATCCGTTCATTTATACGAAAACG
GACAACGGGCCACTTATCCGGAAAGCACATTAACATATACCAATTTAGAC
TCGAACTTTTTAAGTTATAATAACTTGAACTATAGTTTTGCAGACACGAG
TACCTCAGTGACGGCTGCACGTTACGCGGCTGAACGAGGTCTCACGGGAG
CTCCGCCACCTCTTGATTTTATAACTCGTGGAGCACCAACCGATATTTCA
AGCGTTGTACAACCTCGTGGTATGGAAGGCACAGGATCGGCAGCATCTCG
TCTCTCCGAACTTGCATCGTCATCTACCACCGACCTTTACTCTGTATCAA
CCTCTCGATTCATGTCACCACCCAACAGTCCTTTCCCTAATGGTGAGAGT
CGAGACTTCTACCTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCACGTT
CAACGCAGTACCGGGGACCACTGACCAAGACCGTATTACATCTTTCTACT
CTCCCTATCGCTCATCAACGACATCCGCCTACCAACAGTATTAAATGATC
CTACCACACAACGATCACATTACCCAAGATTCCAATCGACAGATTAGAGG
TGCCACTGCATCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGACAA
CCATGGAACAAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTGGTTGAC
TCCGCCACCTCCACAGCTAACCCAGCTCCGTATTACACATACAGCCAAGA
CCCTTCATCCTACACTGATTACTACAGATCTAGTGTTTACGCTAGTCGTA
ACGTACCGCCCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCGTATTAC
GCTGCTCCGTACGCGGATCCTCATTACCACCACCATTACTACTCCCAGTA
TCAAATGCTCAACATGAACACACAACAAAAAGAGTTAGTCAAACCACCTT
ATTCATACATCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCAGAAAAA
AAACTAACACTCAGCGGCATTTATCAATTTATTATGGATCGCTTCCCATA
TTACCGTCAAAACAAACAAGGTTGGCAGAATTCTATCCGTCACAATCTCA
GCTTGAACGAATGTTTCTTGAAAGTTCCCAGAGATGATAATAAACCAGGA
AAAGGTAGTTATTGGGCTTTGGATCCTGATTCCATCAATATGTTTGAGAA
TGGGAGTTACTTACGACGACGCAGGCGATTCAGGAAGAAAGACATCAAGA
AGGAGGATATGGGAGAGGGAGATGACCTccttgatgaagaagaagaagcc
aAGGTATGGGCTAACACTACCCATGGTCGTATGCATCCACATCCTGAACA
AACCCTTCATCTAGTAGGAGAAGGACGACAACCACAATTTCTTCCACCTA
AAGAAGACcatcaaaagaaaatcatgCATCCACATCAACAGAGTCTCCCA
ACCTCACCATCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGACCATTAC
TTTAGGCCAGGAACAACCTGCCATCCACCCTGCAGCTAAGATGAACACAC
AACAACCTCATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAGCATTCT
GAAACAACTCCTAAAAACGGGGAAGTCACAGAAGAAGATAAACTGAATCA
AGACAAGGATAAAGCGACACCACAATCCGTTCATTTATACGAAAACGGAC
AACGGGCCACTTATCCGGAAAGCACATTAACATATACCAATTTAGACTCG
AACTTTTTAAGTTATAATAACTTGAACTATAGTTTTGCAGACACGAGTAC
CTCAGTGACGGCTGCACGTTACGCGGCTGAACGAGGTCTCACGGGAGCTC
CGCCACCTCTTGATTTTATAACTCGTGGAGCACCAACCGATATTTCAAGC
GTTGTACAACCTCGTGGTATGGAAGGCACAGGATCGGCAGCATCTCGTCT
CTCCGAACTTGCATCGTCATCTACCACCGACCTTTACTCTGTATCAACCT
CTCGATTCATGTCACCACCCAACAGTCCTTTCCCTAATGGTGAGAGTCGA
GACTTCTACCTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCACGTTCAA
CGCAGTACCGGGGACCACTGACCAAGACCGTATTACATCTTTCTACTCTC
CCTATCGCTCATCAACGACATCCGCCTACCAACAGTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001095XLOC_001095Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
FoxC Forhead domain containing proteinTCONS_00002091-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002091-exon-sc0000018-1491911889:928747..928886TCONS_00002091-exon-sc0000018-1491911889:928747..928886Clytia hemisphaericaexon
TCONS_00002091-exon-sc0000018-1510915933:928747..928886TCONS_00002091-exon-sc0000018-1510915933:928747..928886Clytia hemisphaericaexon
TCONS_00002091-exon-sc0000018-1575043694:928747..928886TCONS_00002091-exon-sc0000018-1575043694:928747..928886Clytia hemisphaericaexon
TCONS_00002091-exon-sc0000018-1491911889:934770..934809TCONS_00002091-exon-sc0000018-1491911889:934770..934809Clytia hemisphaericaexon
TCONS_00002091-exon-sc0000018-1510915933:934770..934809TCONS_00002091-exon-sc0000018-1510915933:934770..934809Clytia hemisphaericaexon
TCONS_00002091-exon-sc0000018-1575043694:934770..934809TCONS_00002091-exon-sc0000018-1575043694:934770..934809Clytia hemisphaericaexon
TCONS_00002091-exon-sc0000018-1491911889:934871..937292TCONS_00002091-exon-sc0000018-1491911889:934871..937292Clytia hemisphaericaexon
TCONS_00002091-exon-sc0000018-1510915933:934871..937292TCONS_00002091-exon-sc0000018-1510915933:934871..937292Clytia hemisphaericaexon
TCONS_00002091-exon-sc0000018-1575043694:934871..937292TCONS_00002091-exon-sc0000018-1575043694:934871..937292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:928747..937292 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.147805 0.166341 0.840656 0.984965 0.000127318 0 9.31304e-05 1.32936 3.0965e-06 0 0 0 0 0.210826 0 0 4.23456e-09 0.163388 0 0 0 1.14089e-05 0 0 0 0 0.0290353
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR018122TF_fork_head_CS_1
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
BLAST of TCONS_00002091 vs. Swiss-Prot (Human)
Match: FOXC2 (Forkhead box protein C2 OS=Homo sapiens GN=FOXC2 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.775e-52
Identity = 82/95 (86.32%), Postives = 92/95 (96.84%), Query Frame = 2
Query:  470 KELVKPPYSYIALISMAIQSSPEKKLTLSGIYQFIMDRFPYYRQNKQGWQNSIRHNLSLNECFLKVPRDDNKPGKGSYWALDPDSINMFENGSYL 754
            K+LVKPPYSYIALI+MAIQ++PEKK+TL+GIYQFIMDRFP+YR+NKQGWQNSIRHNLSLNECF+KVPRDD KPGKGSYW LDPDS NMFENGS+L
Sbjct:   68 KDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 162          
The following BLAST results are available for this feature:
BLAST of TCONS_00002091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXC23.775e-5286.32Forkhead box protein C2 OS=Homo sapiens GN=FOXC2 P... [more]
back to top