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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002091 ID=TCONS_00002091|Name=TCONS_00002091|organism=Clytia hemisphaerica|type=transcript|length=2602bp
gctctctttttttttgttatttttcaataaagaaagAAACAGGGTCTTTT
GGAACAGAAGAGAGAAAGGATCGAAGTAAAGACATATGATCCTACCACAC
AACGATCACATTACCCAAGATTCCAATCGACAGATTAGAGGTGCCACTGC
ATCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGACAACCATGGAAC
AAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTGGTTGACTCCGCCACC
TCCACAGCTAACCCAGCTCCGTATTACACATACAGCCAAGACCCTTCATC
CTACACTGATTACTACAGATCTAGTGTTTACGCTAGTCGTAACGTACCGC
CCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCGTATTACGCTGCTCCG
TACGCGGATCCTCATTACCACCACCATTACTACTCCCAGTATCAAATGCT
CAACATGAACACACAACAAAAAGAGTTAGTCAAACCACCTTATTCATACA
TCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCAGAAAAAAAACTAACA
CTCAGCGGCATTTATCAATTTATTATGGATCGCTTCCCATATTACCGTCA
AAACAAACAAGGTTGGCAGAATTCTATCCGTCACAATCTCAGCTTGAACG
AATGTTTCTTGAAAGTTCCCAGAGATGATAATAAACCAGGAAAAGGTAGT
TATTGGGCTTTGGATCCTGATTCCATCAATATGTTTGAGAATGGGAGTTA
CTTACGACGACGCAGGCGATTCAGGAAGAAAGACATCAAGAAGGAGGATA
TGGGAGAGGGAGATGACCTccttgatgaagaagaagaagccaAGGTATGG
GCTAACACTACCCATGGTCGTATGCATCCACATCCTGAACAAACCCTTCA
TCTAGTAGGAGAAGGACGACAACCACAATTTCTTCCACCTAAAGAAGACc
atcaaaagaaaatcatgCATCCACATCAACAGAGTCTCCCAACCTCACCA
TCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGACCATTACTTTAGGCCA
GGAACAACCTGCCATCCACCCTGCAGCTAAGATGAACACACAACAACCTC
ATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAGCATTCTGAAACAACT
CCTAAAAACGGGGAAGTCACAGAAGAAGATAAACTGAATCAAGACAAGGA
TAAAGCGACACCACAATCCGTTCATTTATACGAAAACGGACAACGGGCCA
CTTATCCGGAAAGCACATTAACATATACCAATTTAGACTCGAACTTTTTA
AGTTATAATAACTTGAACTATAGTTTTGCAGACACGAGTACCTCAGTGAC
GGCTGCACGTTACGCGGCTGAACGAGGTCTCACGGGAGCTCCGCCACCTC
TTGATTTTATAACTCGTGGAGCACCAACCGATATTTCAAGCGTTGTACAA
CCTCGTGGTATGGAAGGCACAGGATCGGCAGCATCTCGTCTCTCCGAACT
TGCATCGTCATCTACCACCGACCTTTACTCTGTATCAACCTCTCGATTCA
TGTCACCACCCAACAGTCCTTTCCCTAATGGTGAGAGTCGAGACTTCTAC
CTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCACGTTCAACGCAGTACC
GGGGACCACTGACCAAGACCGTATTACATCTTTCTACTCTCCCTATCGCT
CATCAACGACATCCGCCTACCAACAGTATTAATGCTAAGAGACACTTTAA
CTAAATGAACTTGTTCATTCCATATAGatgaaatttatttaaaatttata
caaaaaagagaaatttaagCTCAGGATTGAAacgacattttttaaatgct
aGATCCGCAACtgtttctttacttttttagaataatttcttcttcatatt
ttttttttgaaaacaatatatttttttccgcagcaattttatatatatat
attttacctacaatgttatttattttaataaagCCCACGTGGGAAGCTTT
ATACCTAGAATATAAtagtaaaaaaaactttttgcatatattttttgaat
tagatttttttGTGAACTTTACTCTCTTGTCAAAAACCTTATCTTTCTTA
AACCCTAGAACAACTCTGATACCCAAATTAGTCGTCGTTTTCAGGGTTGG
CTTAAGTAAGTGCTTGGtctttcaaaataacaaaaacaactcCAGTTTAA
AAGCTCATACGATTAATTTAAGACCTTGTTTCCAACTTTGCAGAATACAC
TactggaattttttttacccctCACCAATTTAGAACAGTTCATTTTCTAC
CTTAAACGATTTTTACTGTACATactcaaaaaatattctcaactcAACGA
AAAACAGGCCTTTTTAAGGTCCTCTTAGAAGGGAAAtgttattttgttta
aaaatgttgGCCTCTTACATTTGTTTAGTCTCAAATTAGGAAAgctttgt
ttttgtgtttttgcaACCAATATTATTTATTTGAGCAGCGAAAAGAGTAA
CAAAAACATTAGAAAAGGCAATATACACAAGCTAGAGATCAGTACAACAT
TACTTTTCAGAAAGGCTAGATGAGGATAGACTTTTCTTCATATTGAGGTT
TA Run BLAST on NCBI protein sequence of FoxC Forhead domain containing protein >TCONS_00002091-protein ID=TCONS_00002091-protein|Name=FoxC Forhead domain containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp
MILPHNDHITQDSNRQIRGATASSAPETTPTTSATTMEQVPFTGAASTTV
VDSATSTANPAPYYTYSQDPSSYTDYYRSSVYASRNVPPPSSQYANVASP
YYAAPYADPHYHHHYYSQYQMLNMNTQQKELVKPPYSYIALISMAIQSSP
EKKLTLSGIYQFIMDRFPYYRQNKQGWQNSIRHNLSLNECFLKVPRDDNK
PGKGSYWALDPDSINMFENGSYLRRRRRFRKKDIKKEDMGEGDDLLDEEE
EAKVWANTTHGRMHPHPEQTLHLVGEGRQPQFLPPKEDHQKKIMHPHQQS
LPTSPSLQEATPGGGQTITLGQEQPAIHPAAKMNTQQPHPEGTDQEGDLE
HSETTPKNGEVTEEDKLNQDKDKATPQSVHLYENGQRATYPESTLTYTNL
DSNFLSYNNLNYSFADTSTSVTAARYAAERGLTGAPPPLDFITRGAPTDI
SSVVQPRGMEGTGSAASRLSELASSSTTDLYSVSTSRFMSPPNSPFPNGE
SRDFYLNAAAAASAYSTFNAVPGTTDQDRITSFYSPYRSSTTSAYQQY Run BLAST on NCBI transcript from alignment at sc0000018:928747..937292+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002091 ID=TCONS_00002091|Name=TCONS_00002091|organism=Clytia hemisphaerica|type=transcript|length=8546bp|location=Sequence derived from alignment at sc0000018:928747..937292+ (Clytia hemisphaerica)
gctctctttttttttgttatttttcaataaagaaagAAACAGGGTCTTTT
GGAACAGAAGAGAGAAAGGATCGAAGTAAAGACATATGATCCTACCACAC
AACGATCACATTACCCAAGATTCCAATCGACAGATTAGAGGTATGTTCTT
AACAGCTCATTTTTCTTATTCTcgtttttttgtttctattttaCCGCGCA
CGCATCAAGCGCACGCGCGCgacttgttttatttttttattgtctaCGCA
TCGATTGTTTGTTTGTGTATAGTGGCCAACCCtgtcttctttttttgtta
AAGATGTCTTGTTTATTGCCATTTGCATATGTATTAGGAAATGACCATAG
CAtacaaataaagaattttcttAAACGCGATCTGTAACAACACTAAACAA
GAACGATGGTCAAAGAAAACACAGAAAAGGGTATTAGATTTTTctgttca
tatttttttttttcgccaGATGTTTATTTTTGATACATCGGCTCCCTTTT
TTTTGCGAGAAAtctattgtttttgtttgtcccaaaattttattttcgta
TTATTAAATTTGGATAAACTTTAATTCCTTCTTGTTGCATTTTCAATCAG
AATTttattttcccataaaattAACATCAGTGTTTTTTaaggaaactttt
ttttcaactctCGATCTTTCTAACGTTTGACTCTTAAATCAAGTTTACTA
TTTAAGAacttaaaacttttcaaatattgtttCGATAAACTTCAATTTCT
TGgattttaaattgtttatttGTTAACTCTAGATGTTTTTGGAGCCTTTT
GTGAGGTTTAATCATGTTATTGATTGACGATAAAGTGAAATGGGGATGGA
cttttttgacactttcaaaTGTCCCAACCTTTTAATATATTAAAGTATCG
AATTTATGGAAAGTGCTCCATTTTAAGATAGTATTCGCCAAGTTGTTGTA
TCACACGCTTTCAAAGTttataatcaaaacaaagtatAGTATTAAATCAA
CATGCTCCTTTCATCGATGCTATATAGTCCCTCACAAAGAGCATTGCTTa
cattaaataaataaataaacatatAATTTAAGCTCAATAGTATAAGATAA
ATATAAAATGTTATCTTTAAGTCTGGTAGGTTATGAAGGCACGTTAGATT
TAATAGTTCTGTCAACGAATTTTGACATTTAAATTATACCTTAGAAAAAC
AAAACTCTAAACTATAATGGATAATAATGTTTATGTTGCATTCTTGTAGA
CCGTGTATACAAAGGTTATCCAGGTCTTTGCAAGGACCAATCCTTTTGTC
TGGTGATGTTTTTAAACATGATTTTTCGATGTTTTAACACTATCTTATAT
ACCTCaaccaaaatattattttagttTTGTGTTTCATACGTTTCTCTata
tttttgtgtttactttacGATCGATTGCCTTTCTACTACCCCTTTTTATA
AACCATCCTATATCTTGACTATGTAAATAAAGTCATAAATGAAAGGACAA
ATTATGATTTCTACAAGTGTATAAGAAATCCTTCAATATATAAAACCAAT
TTCAGTTTGTCGTATATAGAAAAATCGAGACCACATTCTCACAGACTTTC
TTAACGCGCGTTTTTTCGCTCATGTGATTTTCTTTGAGACGCTATCGTAT
TTCTTTCTCCTCGGaaacagagaatttttttttcattccatgCGTGTTGT
GTGTTCGGTTGATTCGACTCTCTAATGGCTTGTAAATTCTTTTCCTTAAA
TGCAACGAGTTGTGTCTTTCAAACGTCCTCTCTGTGCGTGTCTGTCTTTT
TTGGGTCTTCGTCAtcaattttgtgattttttttgctacTGTACTGATTT
TGACTGCTCGTTACGCAGATCGATCTTTCACTCAAAGACCATTGATAAAG
ATTTTTCATGTAAATACTTTCAAAACTCCACACGTCTCCCGATTGAATAC
GTGAATACCgtaagaaaattgtaaagaaaaactaattttggtgagagCTT
ATTTTAGGGAACGACAGAATAAAAACCCTTACGGAAACAAAATGCTcgta
ttccattgaaaacgaatATAGAATGCATTAAAATAGAATAAACTTCTAGG
TTCAAAACTTTAATGAATTTCTAATTCATTGGGTATCaaaatgtatttaa
attctAGACTTTAAATTACATATAAATGAGCGATTTAGACTAAATTTCGA
ATgacttaaaaaatttcattttgaagacaAATTATTTTTGCGAGGAagca
ttttaattttggcgaatatGATTTACTCAAAGGAATTTGGACTCgctaaa
atttaccaaaatttattcttatataGAGCCCCTTTTACAGTAGTTGGCAT
CGTATTTTAAATGATTGGCCATGTTAAATTTGTTTCAGAAAGGAATTTTC
ATCCCCTTAAAAGGTCTAAATAGTTTGTAAAATTATCCTTATGGAACGAG
CCAAACTTCTTAAAAGTTGTAAAAGTACTTCACAAGAAATGGTGATAAGC
TATTTTTAGGAGAGCGTAAGAAATCTTTGAACTTTCATTGAAACGTCATT
CGGAATCGtgtatgtatttttttctcCGTTTTTTTTAAGTCACGTCGCGT
TTTGCTTAATTTTCGGACCCAGACCATTCTCCTTAACTTgaacctcttta
actcgaatgcctccttaactcgaacaagctttATCGTCCTTGCAgctaac
aatgccttataaaccatactctataactcgaaaatttccttaaatcgaac
aaatttgtgttccccatgCGCGCTCGATGAGTTATATGGAAATTCCATGG
GGGCCCCCTCCATTGTATTTAAAGAATATCATATTTTGCGATGAGGTCAT
TTAAATAATTCTTCACTGAGCAGAATAATCAGAGTCTCGTTTAATATTTT
GCTTGCCACCCTGACTTTTACCGGCCTTCTctgatatgaaaaaaaataga
tttctgtCATTTTTCTCTCTGGTAGCTTCAGGGTATTTAGCTTTGCAATG
GTCACGATATATAAGATTATTGTAAACATGAAAGAAATACAAGTCATTTA
AATTTCtaatggaaaatattttacccGGAAAAATTTTGCTGAAAGTATAA
GGGGTCTTTttttattctgaaaaatttaaggGGAATCTAAAAATTGGATG
ATGATTAAAATGTAGACAAGTTTGTTGATTCACACTAATACGGGGAAAAC
ACTTGAAAACATAGCATACTTTCGTATTATGACCCATATAACAAACACTT
GATATAATACTATCGTATGCTTGTTATTAATGTTGTATCTATTTGTTATA
CCACTGACAAATTGATGCAAATAGTATATTCAATTCTAGGTAAATTTTGT
CCCATTCCAACTTTTGAAATAATGATTTGTCAGAAGGTCTTTTTCATAGG
GACCATTTTACTATCAGTATCACAGCCATTTAGCCCTTTTTGCTACAGGC
CAGTAAACAATAAGTGGACAACTTCCAAGCTTTCGAGAATTTCTATACTT
ATAAACATTTGTCtaaatttgatatgaaaaatgATCGAAATTAAACGTCA
AACTTTCAATGTCTTATCCATCGTCTACGAAGCGAGACAAAATTCACGGA
AGATAATCTTTTAGAAAGGAAATGGGTGTGAAAAGAGACGACACTAGAAT
TGGAATGTTCTACTTAATCCTGTGGATTATTTACGCGTCTTTTCTTGTCT
TACCGCACTTTTTGGCAGTTTTACCTTTTCGTGACTTTTCTATTTCACTT
TTCGTTATCTACTCCATCACATATTGAATTATAACCCGAATTATTTAAGT
CAGAAATTATGACAgtttgattttgtaatttcctaccatAAATATCTTAT
TCCGTCAATTATCTAGATTATTATTAGGATACTTTTGAGACATTCCTCTA
ACGAAAAAAAATCACGTCAAAAGTCAAGTGTCTGAATGGCATTGTCGGCT
TAGGAAATATTTTCAACGAAGGTGTGCACCTTTTCCACTGTGTATACCAT
ATATGTCTCATGGAACACCCCTTTGCAGGTGAAAAAACGTCACATCAACT
TCTATAAACACGTCACTAAGATAAACAAAATTTACGCACATTTAAATTCT
TGAGAACGCGCCAGTCCATGGAAGCTCAGATCCGTGATTTTTGGTAAATA
TCCTACTTTAAGATCAACGGgatattattatccatatagcggtcattaag
taagccattaaagattcgaacggcgggcggtattgaaaggttctatgact
caaatagtcatatccgcgctgagaaaactaaggcgtcgcgcttcagaggg
ctgaaataccattaaccgccctggttatagggcgataacgtcatttgcga
cccgctcggaactttattgaagtcgttgcattgaagcgaaaagactaaac
taacgtcagaaaaaaacactttttggtcatttgcgacccgctcgcaaggg
tactcaaaacttgttaaagtccttgcattgaagcgaaaagacttggccga
cgctagaaaaaaacgttgtttgaatttccaatatggataataatagtaat
agcgttaagctttcgttcgttgttgtcattaattctgcccttgcagtttg
attattagccctctagtgccatttgcgccctccgcttcgcgtcgggccca
aatgacactctcgggctaataattaaactgcgcgggcagaaaataacaac
aacgacctcaaactgaacgctattgttataataTCAAACACTCTTAAATC
ACAGATTAATGCATTATAAGTCATTGGTTAAATACGGGAATATGAACATA
ATAAAACTTGTAATACTCCTTAACTATTGTCAACTCGGAATCAATAATCA
GTCAAAACAAATTATTAACTTTTTctatttgaccaattttgtctTTTTGC
GGGACGCGGAATCAAGAGAGAAAAGGTGCGAATAGTATAGGTAAACAAAA
CTGATATTAAAACCTATTATCAAAGTGTCAATTAGGTAATTAAACATAAT
TAaagtaagaaaatattaaatcaTTAAATATATaatctgaaaaatggcaa
aataagAAAGAGGGGGAAATAAGGGGAAAGTAACGAATAACACAAAACCA
ACAAGACTCATTTGTAATCAATAAGAATGACTTCCATTTTGTGGGGTGTT
AATTTTTTCCTTCACGCGTCGTCGGCTTTTTGTCAGTGTCATCTAAGTTC
CGCTATATCAAAAAGGCTAGTTCACACTGAGAGCCGTATTCACACAGCTT
ACACATAAATCTGAACTGAGTATTCAACTCACACTTTTATATACTGGCGG
AGGAAAAGAAAGGGCTTTTAGTGATAAAGGAACTCACACATTGAGCTTTT
CATCATTAATCAACTGATAATTTTACTTAATTTGTGTTGCTTCACTCACA
TGAATCACTAGAATTTTGCATATTGAAATCACTTTTAAATTTACCTTGTG
ATTGCTGGTTGGAAAGAAAAACTAACTTTTGAGTAAGatcatttaatttt
caaaatagaagtTGTTTTTTGTTATTCTTGCTAAACTTTATATTAGATCC
TGTATTCTACCACGTATAGAATTCTGACtgattattttttcttaattttt
ttctgaacttaAATTCAAAACACAGGGCATGTTTTCAAAGAATACATTTC
AGTGTCAGAAGGTTCTCAATATCACTTCTTGTTTTCATTCTTAATAATCT
TGAACCAAATGATCGAGATTCTGACTGATTGATGTCAAAAGTTTATTACT
TTAAAACTAACATTTCCCGCTTCgtatttttttctataatttttcatttt
tatcaagtTATAAAATCACCACAAACTTTTAAAACTCACTCGAACGACGT
TAAATAACGTTAAAAGATTGAGCAAATCTTGTTAAGTTTTGGCATTGTCA
AATTCATGTCATTATAGTTGCGCGCTTGTTAGGTGCTATCTATTCAAAtt
aattgtgtttttttttgtttgatcagtattaaaaactaaatattttcaat
tttaatttgttCTAATTTTTCAGGTGCCACTGCATCGTCAGCGCCAGAGA
CGACTCCTACGACATCTGCGACAACCNTTTTCAGGTGCCCCTGCATCGTC
AGCGCCAGAGACGACTCCTACGACATCTGCGACAACCATGGAACAAGTCC
CTTTCACCGGCGCTGCCTCCACCACGGTGGTTGACTCCGCCACCTCCACA
GCTAACCCAGCTCCGTATTACACATACAGCCAAGACCCTTCATCCTACAC
TGATTACTACAGATCTAGTGTTTACGCTAGTCGTAACGTACCGCCCCCTT
CGAGTCAGTACGCGAACGTCGCTAGTCCGTATTACGCTGCTCCGTACGCG
GATCCTCATTACCACCACCATTACTACTCCCAGTATCAAATGCTCAACAT
GAACACACAACAAAAAGAGTTAGTCAAACCACCTTATTCATACATCGCTC
TCATCTCAATGGCTATCCAAAGCTCGCCAGAAAAAAAACTAACACTCAGC
GGCATTTATCAATTTATTATGGATCGCTTCCCATATTACCGTCAAAACAA
ACAAGGTTGGCAGAATTCTATCCGTCACAATCTCAGCTTGAACGAATGTT
TCTTGAAAGTTCCCAGAGATGATAATAAACCAGGAAAAGGTAGTTATTGG
GCTTTGGATCCTGATTCCATCAATATGTTTGAGAATGGGAGTTACTTACG
ACGACGCAGGCGATTCAGGAAGAAAGACATCAAGAAGGAGGATATGGGAG
AGGGAGATGACCTccttgatgaagaagaagaagccaAGGTATGGGCTAAC
ACTACCCATGGTCGTATGCATCCACATCCTGAACAAACCCTTCATCTAGT
AGGAGAAGGACGACAACCACAATTTCTTCCACCTAAAGAAGACcatcaaa
agaaaatcatgCATCCACATCAACAGAGTCTCCCAACCTCACCATCCTTA
CAAGAGGCAACTCCCGGTGGTGGGCAGACCATTACTTTAGGCCAGGAACA
ACCTGCCATCCACCCTGCAGCTAAGATGAACACACAACAACCTCATCCTG
AGGGCACAGACCAGGAAGGAGACTTGGAGCATTCTGAAACAACTCCTAAA
AACGGGGAAGTCACAGAAGAAGATAAACTGAATCAAGACAAGGATAAAGC
GACACCACAATCCGTTCATTTATACGAAAACGGACAACGGGCCACTTATC
CGGAAAGCACATTAACATATACCAATTTAGACTCGAACTTTTTAAGTTAT
AATAACTTGAACTATAGTTTTGCAGACACGAGTACCTCAGTGACGGCTGC
ACGTTACGCGGCTGAACGAGGTCTCACGGGAGCTCCGCCACCTCTTGATT
TTATAACTCGTGGAGCACCAACCGATATTTCAAGCGTTGTACAACCTCGT
GGTATGGAAGGCACAGGATCGGCAGCATCTCGTCTCTCCGAACTTGCATC
GTCATCTACCACCGACCTTTACTCTGTATCAACCTCTCGATTCATGTCAC
CACCCAACAGTCCTTTCCCTAATGGTGAGAGTCGAGACTTCTACCTAAAT
GCGGCCGCTGCAGCCTCAGCTTACAGCACGTTCAACGCAGTACCGGGGAC
CACTGACCAAGACCGTATTACATCTTTCTACTCTCCCTATCGCTCATCAA
CGACATCCGCCTACCAACAGTATTAATGCTAAGAGACACTTTAACTAAAT
GAACTTGTTCATTCCATATAGatgaaatttatttaaaatttatacaaaaa
agagaaatttaagCTCAGGATTGAAacgacattttttaaatgctaGATCC
GCAACtgtttctttacttttttagaataatttcttcttcatatttttttt
ttgaaaacaatatatttttttccgcagcaattttatatatatatatttta
cctacaatgttatttattttaataaagCCCACGTGGGAAGCTTTATACCT
AGAATATAAtagtaaaaaaaactttttgcatatattttttgaattagatt
tttttGTGAACTTTACTCTCTTGTCAAAAACCTTATCTTTCTTAAACCCT
AGAACAACTCTGATACCCAAATTAGTCGTCGTTTTCAGGGTTGGCTTAAG
TAAGTGCTTGGtctttcaaaataacaaaaacaactcCAGTTTAAAAGCTC
ATACGATTAATTTAAGACCTTGTTTCCAACTTTGCAGAATACACTactgg
aattttttttacccctCACCAATTTAGAACAGTTCATTTTCTACCTTAAA
CGATTTTTACTGTACATactcaaaaaatattctcaactcAACGAAAAACA
GGCCTTTTTAAGGTCCTCTTAGAAGGGAAAtgttattttgtttaaaaatg
ttgGCCTCTTACATTTGTTTAGTCTCAAATTAGGAAAgctttgtttttgt
gtttttgcaACCAATATTATTTATTTGAGCAGCGAAAAGAGTAACAAAAA
CATTAGAAAAGGCAATATACACAAGCTAGAGATCAGTACAACATTACTTT
TCAGAAAGGCTAGATGAGGATAGACTTTTCTTCATATTGAGGTTTA Coding sequence (CDS) from alignment at sc0000018:928747..937292+ >TCONS_00002091 ID=TCONS_00002091|Name=TCONS_00002091|organism=Clytia hemisphaerica|type=CDS|length=4941bp|location=Sequence derived from alignment at sc0000018:928747..937292+ (Clytia hemisphaerica)
ATGATCCTACCACACAACGATCACATTACCCAAGATTCCAATCGACAGAT
TAGAGGTGCCACTGCATCGTCAGCGCCAGAGACGACTCCTACGACATCTG
CGACAACCATGGAACAAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTG
GTTGACTCCGCCACCTCCACAGCTAACCCAGCTCCGTATTACACATACAG
CCAAGACCCTTCATCCTACACTGATTACTACAGATCTAGTGTTTACGCTA
GTCGTAACGTACCGCCCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCG
TATTACGCTGCTCCGTACGCGGATCCTCATTACCACCACCATTACTACTC
CCAGTATCAAATGCTCAACATGAACACACAACAAAAAGAGTTAGTCAAAC
CACCTTATTCATACATCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCA
GAAAAAAAACTAACACTCAGCGGCATTTATCAATTTATTATGGATCGCTT
CCCATATTACCGTCAAAACAAACAAGGTTGGCAGAATTCTATCCGTCACA
ATCTCAGCTTGAACGAATGTTTCTTGAAAGTTCCCAGAGATGATAATAAA
CCAGGAAAAGGTAGTTATTGGGCTTTGGATCCTGATTCCATCAATATGTT
TGAGAATGGGAGTTACTTACGACGACGCAGGCGATTCAGGAAGAAAGACA
TCAAGAAGGAGGATATGGGAGAGGGAGATGACCTccttgatgaagaagaa
gaagccaAGGTATGGGCTAACACTACCCATGGTCGTATGCATCCACATCC
TGAACAAACCCTTCATCTAGTAGGAGAAGGACGACAACCACAATTTCTTC
CACCTAAAGAAGACcatcaaaagaaaatcatgCATCCACATCAACAGAGT
CTCCCAACCTCACCATCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGAC
CATTACTTTAGGCCAGGAACAACCTGCCATCCACCCTGCAGCTAAGATGA
ACACACAACAACCTCATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAG
CATTCTGAAACAACTCCTAAAAACGGGGAAGTCACAGAAGAAGATAAACT
GAATCAAGACAAGGATAAAGCGACACCACAATCCGTTCATTTATACGAAA
ACGGACAACGGGCCACTTATCCGGAAAGCACATTAACATATACCAATTTA
GACTCGAACTTTTTAAGTTATAATAACTTGAACTATAGTTTTGCAGACAC
GAGTACCTCAGTGACGGCTGCACGTTACGCGGCTGAACGAGGTCTCACGG
GAGCTCCGCCACCTCTTGATTTTATAACTCGTGGAGCACCAACCGATATT
TCAAGCGTTGTACAACCTCGTGGTATGGAAGGCACAGGATCGGCAGCATC
TCGTCTCTCCGAACTTGCATCGTCATCTACCACCGACCTTTACTCTGTAT
CAACCTCTCGATTCATGTCACCACCCAACAGTCCTTTCCCTAATGGTGAG
AGTCGAGACTTCTACCTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCAC
GTTCAACGCAGTACCGGGGACCACTGACCAAGACCGTATTACATCTTTCT
ACTCTCCCTATCGCTCATCAACGACATCCGCCTACCAACAGTATTAAATG
ATCCTACCACACAACGATCACATTACCCAAGATTCCAATCGACAGATTAG
AGGTGCCACTGCATCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGA
CAACCATGGAACAAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTGGTT
GACTCCGCCACCTCCACAGCTAACCCAGCTCCGTATTACACATACAGCCA
AGACCCTTCATCCTACACTGATTACTACAGATCTAGTGTTTACGCTAGTC
GTAACGTACCGCCCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCGTAT
TACGCTGCTCCGTACGCGGATCCTCATTACCACCACCATTACTACTCCCA
GTATCAAATGCTCAACATGAACACACAACAAAAAGAGTTAGTCAAACCAC
CTTATTCATACATCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCAGAA
AAAAAACTAACACTCAGCGGCATTTATCAATTTATTATGGATCGCTTCCC
ATATTACCGTCAAAACAAACAAGGTTGGCAGAATTCTATCCGTCACAATC
TCAGCTTGAACGAATGTTTCTTGAAAGTTCCCAGAGATGATAATAAACCA
GGAAAAGGTAGTTATTGGGCTTTGGATCCTGATTCCATCAATATGTTTGA
GAATGGGAGTTACTTACGACGACGCAGGCGATTCAGGAAGAAAGACATCA
AGAAGGAGGATATGGGAGAGGGAGATGACCTccttgatgaagaagaagaa
gccaAGGTATGGGCTAACACTACCCATGGTCGTATGCATCCACATCCTGA
ACAAACCCTTCATCTAGTAGGAGAAGGACGACAACCACAATTTCTTCCAC
CTAAAGAAGACcatcaaaagaaaatcatgCATCCACATCAACAGAGTCTC
CCAACCTCACCATCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGACCAT
TACTTTAGGCCAGGAACAACCTGCCATCCACCCTGCAGCTAAGATGAACA
CACAACAACCTCATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAGCAT
TCTGAAACAACTCCTAAAAACGGGGAAGTCACAGAAGAAGATAAACTGAA
TCAAGACAAGGATAAAGCGACACCACAATCCGTTCATTTATACGAAAACG
GACAACGGGCCACTTATCCGGAAAGCACATTAACATATACCAATTTAGAC
TCGAACTTTTTAAGTTATAATAACTTGAACTATAGTTTTGCAGACACGAG
TACCTCAGTGACGGCTGCACGTTACGCGGCTGAACGAGGTCTCACGGGAG
CTCCGCCACCTCTTGATTTTATAACTCGTGGAGCACCAACCGATATTTCA
AGCGTTGTACAACCTCGTGGTATGGAAGGCACAGGATCGGCAGCATCTCG
TCTCTCCGAACTTGCATCGTCATCTACCACCGACCTTTACTCTGTATCAA
CCTCTCGATTCATGTCACCACCCAACAGTCCTTTCCCTAATGGTGAGAGT
CGAGACTTCTACCTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCACGTT
CAACGCAGTACCGGGGACCACTGACCAAGACCGTATTACATCTTTCTACT
CTCCCTATCGCTCATCAACGACATCCGCCTACCAACAGTATTAAATGATC
CTACCACACAACGATCACATTACCCAAGATTCCAATCGACAGATTAGAGG
TGCCACTGCATCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGACAA
CCATGGAACAAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTGGTTGAC
TCCGCCACCTCCACAGCTAACCCAGCTCCGTATTACACATACAGCCAAGA
CCCTTCATCCTACACTGATTACTACAGATCTAGTGTTTACGCTAGTCGTA
ACGTACCGCCCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCGTATTAC
GCTGCTCCGTACGCGGATCCTCATTACCACCACCATTACTACTCCCAGTA
TCAAATGCTCAACATGAACACACAACAAAAAGAGTTAGTCAAACCACCTT
ATTCATACATCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCAGAAAAA
AAACTAACACTCAGCGGCATTTATCAATTTATTATGGATCGCTTCCCATA
TTACCGTCAAAACAAACAAGGTTGGCAGAATTCTATCCGTCACAATCTCA
GCTTGAACGAATGTTTCTTGAAAGTTCCCAGAGATGATAATAAACCAGGA
AAAGGTAGTTATTGGGCTTTGGATCCTGATTCCATCAATATGTTTGAGAA
TGGGAGTTACTTACGACGACGCAGGCGATTCAGGAAGAAAGACATCAAGA
AGGAGGATATGGGAGAGGGAGATGACCTccttgatgaagaagaagaagcc
aAGGTATGGGCTAACACTACCCATGGTCGTATGCATCCACATCCTGAACA
AACCCTTCATCTAGTAGGAGAAGGACGACAACCACAATTTCTTCCACCTA
AAGAAGACcatcaaaagaaaatcatgCATCCACATCAACAGAGTCTCCCA
ACCTCACCATCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGACCATTAC
TTTAGGCCAGGAACAACCTGCCATCCACCCTGCAGCTAAGATGAACACAC
AACAACCTCATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAGCATTCT
GAAACAACTCCTAAAAACGGGGAAGTCACAGAAGAAGATAAACTGAATCA
AGACAAGGATAAAGCGACACCACAATCCGTTCATTTATACGAAAACGGAC
AACGGGCCACTTATCCGGAAAGCACATTAACATATACCAATTTAGACTCG
AACTTTTTAAGTTATAATAACTTGAACTATAGTTTTGCAGACACGAGTAC
CTCAGTGACGGCTGCACGTTACGCGGCTGAACGAGGTCTCACGGGAGCTC
CGCCACCTCTTGATTTTATAACTCGTGGAGCACCAACCGATATTTCAAGC
GTTGTACAACCTCGTGGTATGGAAGGCACAGGATCGGCAGCATCTCGTCT
CTCCGAACTTGCATCGTCATCTACCACCGACCTTTACTCTGTATCAACCT
CTCGATTCATGTCACCACCCAACAGTCCTTTCCCTAATGGTGAGAGTCGA
GACTTCTACCTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCACGTTCAA
CGCAGTACCGGGGACCACTGACCAAGACCGTATTACATCTTTCTACTCTC
CCTATCGCTCATCAACGACATCCGCCTACCAACAGTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002091-exon-sc0000018-1491911889:928747..928886 | TCONS_00002091-exon-sc0000018-1491911889:928747..928886 | Clytia hemisphaerica | exon |
| TCONS_00002091-exon-sc0000018-1510915933:928747..928886 | TCONS_00002091-exon-sc0000018-1510915933:928747..928886 | Clytia hemisphaerica | exon |
| TCONS_00002091-exon-sc0000018-1575043694:928747..928886 | TCONS_00002091-exon-sc0000018-1575043694:928747..928886 | Clytia hemisphaerica | exon |
| TCONS_00002091-exon-sc0000018-1491911889:934770..934809 | TCONS_00002091-exon-sc0000018-1491911889:934770..934809 | Clytia hemisphaerica | exon |
| TCONS_00002091-exon-sc0000018-1510915933:934770..934809 | TCONS_00002091-exon-sc0000018-1510915933:934770..934809 | Clytia hemisphaerica | exon |
| TCONS_00002091-exon-sc0000018-1575043694:934770..934809 | TCONS_00002091-exon-sc0000018-1575043694:934770..934809 | Clytia hemisphaerica | exon |
| TCONS_00002091-exon-sc0000018-1491911889:934871..937292 | TCONS_00002091-exon-sc0000018-1491911889:934871..937292 | Clytia hemisphaerica | exon |
| TCONS_00002091-exon-sc0000018-1510915933:934871..937292 | TCONS_00002091-exon-sc0000018-1510915933:934871..937292 | Clytia hemisphaerica | exon |
| TCONS_00002091-exon-sc0000018-1575043694:934871..937292 | TCONS_00002091-exon-sc0000018-1575043694:934871..937292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:928747..937292 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00002091 vs. Swiss-Prot (Human)
Match: FOXC2 (Forkhead box protein C2 OS=Homo sapiens GN=FOXC2 PE=1 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 3.775e-52 Identity = 82/95 (86.32%), Postives = 92/95 (96.84%), Query Frame = 2
Query: 470 KELVKPPYSYIALISMAIQSSPEKKLTLSGIYQFIMDRFPYYRQNKQGWQNSIRHNLSLNECFLKVPRDDNKPGKGSYWALDPDSINMFENGSYL 754
K+LVKPPYSYIALI+MAIQ++PEKK+TL+GIYQFIMDRFP+YR+NKQGWQNSIRHNLSLNECF+KVPRDD KPGKGSYW LDPDS NMFENGS+L
Sbjct: 68 KDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 162
The following BLAST results are available for this feature:
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