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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002079 ID=TCONS_00002079|Name=TCONS_00002079|organism=Clytia hemisphaerica|type=transcript|length=3438bp
ttttactaaacaaacaaacttataATGTCTAGCAGAATAGCAATAGCAAA
AAGAGTGCATTGCATCATAACAAACAATTGTGTCCTTGCATGTAAACCGA
ATTTATACTTGTCTTTTAGAGTGAATTCATTTTAAGTGCATTCGTGCACA
TAGTTAGAAGGGTAAAGAATTACCCAAACTGGGAGATTGGAGATTTCACA
CAAAATGGAGCTTAAAATCTATCCATGTATTGGGCAGATCTCGATTTTAG
TTCTTCTTTTTTGGGCACAATCAGTGCACGGTCATGGAGCTATGGTCAAA
CCAACGAACTGGCTAGATTTTGAAACACGAATTCAATTAGACAATGGCTC
GTGGTTTACAGGTTTTGCTGGTATGAAAACACGTTTACAGTGTAAACCAG
GCCTAACGATCCCAAGGAAGATCATCTGCAAAGAAAACAATGATTGTGAA
GGTTATGCGTTTCCTGGTCCCATCTGTAACTGGTTCACAAATGAAACATG
GATACACACGCCCACACTTTTTGATCCCGCCCTTCGTACCTTCAGTCGCG
TTAGAGACGAAAGTAAAGTGTTGTACACACCCTGGCGGGCACCAGGAGCC
GCCCCGATTTACAGCCCTTGTGGTGTATCCGGTGGTAACCCGAATGGTTG
CGGTGCACTGAAATGTGGGCAGAAGACCGGCGGTTACGGTCACGGTCAGA
GAGCAAAGGATGTTGAATTCGTGCATAATATTTCTGTTACGACATGGAAA
CGAGGCCAAGAGGTTGAGGTGGCTTGGGCGATCTATGTGAATCATGGCGG
AGGTTACTCTTATCGGCTGTGTAAAATGCCAAAAGAAGGACGACCAGGTT
TGACGGAGGAATGTTTTCAGAAGACTTCTCTCCAATTCGTGGGTGATCAT
CAATGGATACAATGGGGTGAGGACGAAACGTCTAGGAGGGAGATAGCAGC
AGTCCGAACAAACAACGGTACCTTCCCTCCTAAATCACAATGGACCAAAA
ACCCAATCCCGGCGTGCGTGGGTCAAACAGGCGGCTTCTTAGACCCGCAC
CAATGTCTAATGGGTACGCAATTTCCCGCTCCAGGACCAGGCTTGAGTGG
ATTTGGGATCAATTTGTACggaacggagaaaatttttcccTTCTCGATTG
TTGATTTAGTGAAGGTGCCTGAGAATTTGGACGTTGGAGAATATGTGTTG
TCGTTCAGATGGGATACTGAACAAGGACATCAAGTGTGGAACACATGTGC
TTCAATTCGTGTCGAATAATAAAATGTTGTCATATTTATGTTAATTGACG
ATTTAAATTTAGAGTCTGAATTCACTTCCAATGATAAAGTTTATGGCGAG
CTCGCAATATAAGCAGACCTGAATTCGTCGGGTTTTCGTGtcgtcaaaat
cgaaaaagacGGACTTTTCATGTCTCAAACTTCTCCGAAGGAAACAAACG
TATTCCTAAGCTTTCTGTGTTGTCCCAATCGAATTTGTTTGTTCCATAAG
CCAAGTGATTTGCACTTTGCTCGAACCCGGAACTTTAGATCAAGAGTTAA
GCACGCTTCAACTCGAATACCGCTGCTTTTTTATTAATCATACAAATCTG
AGGTTCCAACCAAACTTACATATAGGAAACAATTACATGgtctaaatcat
atttctgaGAATGACTTacaaaaatatatcttttattagaaacttgtgaa
TCGAGATGAGACGTGATCACTTCGCAGATTTTACATATTATACCTAAAGG
GAACGAATTTTGGCGAGCAGCAAAAATCCTAAATAGTTTTGAATTTGCCG
AGGAACTCAACTTGCAAAGAcgaaattttgtttattttgacgaaaattaa
tTTACTTTACAAAAGCactttaattttcgaaaataaattcccttaaggta
tgtaacttttaatatataataaataaaattttgctAACCAATATGAAAAG
GTAATTTCTTACTTAAAACAAAACTTATGAATACATTTATATGCAATAAA
TTAATGATTAGGTGAGAATCCTTTGTTATGTACAATGAaaaactaccggg
tgcgccaatgataacaaaaaatttcctaTTATCTGTAAACATTATACATA
ATTAGACAGTATGGTTTTGTCATGACTCAAAATAAAGTCATGAACCTTTT
TATAcagaaatactaaaaaaatacTATACTAAAGTACTTTAGTTTTCTAA
AATAAGTTCCCTTCAAGGTATGTAACTTTtaatatataataaataaaatt
ttgctAACTAATATGAAGGTAATTTCTTACTTAAAACAAAACTTATGAAT
ACATTTACATGCAATAAATTAATGATAAGGTGTTATTTGTTATGTACAAT
GAAAAACTACCAGGTGTGCcaataataacaaaaaatttcctatatcTTAC
CGGCTCTTTTTatgccggcccttattggcgttatttttgggaaggtggcg
taaaaagggcctaTAAGGTATCTGTAAACATTATACGCAGTTGTTGCGTT
TATTGTCATGAttcacaaaaaagtcataaaacatttttttccgaatATAT
ACAGAAAAGAACAAAATCTCGTTTACAACCAGAATCAGTCATTTTGAAGA
AAGAATTTAATGTTAATAGGAATTTTTTGATCGCATGTTTGGTTTTGATG
CAATTTTTGGATATATTTTAATAAGTTGCTAGTATTGATTTGCTATTTTC
CAggaatattttaaaacaaaagtgaatATTGTTCAAATGACGACACTTTT
ACGTAAGGCCTAATTGCGACGATATCCGAAATTTCTACTAATATTGTCAA
ATGAAACTTAAATTATTAATAAGACTTATTTTTGGTGAGGCAAACACAAT
TTACATTGTTTTAACCTTCTTTCGtgaaacaaacttttaaaagtgTCGAA
GGTCGAAAGCCTTAGGGGCTaccaaaaatttcatgaatcATTGGGGCAgt
ttttttgcctgggacctaaacctaGGCTGACGCTGACGTTttacttttct
aaaaaatttttctcgcttgaaaaataaaagtaataaaaccAAATCAAATT
AAACGGAATCACAAAACTGCGCCATAAATCCAAATTTCTTGGAAGTTTAA
CGCGTTGTGACCGACCACTTGTGGTTGCTCAGCATAAATTCCATCAGCCT
GTCTCATACATGAAAAGATTCTGCGTACCCCCATGTCTCCTGTATTCGCA
AACCATGTCATGGTGGTCTGCTCGTTGACGGCTAGTATGGTCTTCAGATC
AATTAGATCACTTCGTTGCGCATATTGAGGGTATAAGATATAATCGTGAC
GATTCACAAACACAACATAGTCGATGAACACACGATTGTTGAATTCCGCC
TAAATAGACAGAAATGAACAAAATTGACAGAACACAGTATTTGAAAACGT
TCTCTCGTTATCTTCACCACAAAACTGTTCATTTCTTC Run BLAST on NCBI transcript from alignment at sc0000018:844239..850717+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002079 ID=TCONS_00002079|Name=TCONS_00002079|organism=Clytia hemisphaerica|type=transcript|length=6479bp|location=Sequence derived from alignment at sc0000018:844239..850717+ (Clytia hemisphaerica)
ttttactaaacaaacaaacttataATGTCTAGCAGAATAGCAATAGCAAA
AAGAGTGCATTGCATCATAACAAACAATTGTGTCCTTGCATGTAAACCGA
ATTTATACTTGTCTTTTAGAGTGAATTCATTTTAAGTGCATTCGTGCACA
TAGTTAGAAGGGTAAAGAATTACCCAAACTGGGAGATTGGAGATTTCACA
CAAAATGGAGCTTAAAATCTATCCATGTATTGGGCAGATCTCGATTTTAG
TTCTTCTTTTTTGGGCACAATCAGTGCACGGTCATGGAGCTATGGTCAAA
CCAACGAACTGGCTAGATTTTGAAACACGAATTCAATTAGACAATGGCTC
GTGGTTTACAGGTTTTGCTGGTATGAAAACACGTTTACAGTGTAAACCAG
GCCTAACGATCCCAAGGAAGATCATCTGCAAAGAAAACAATGATTGTGAA
GGTTATGCGTTTCCTGGTCCCATCTGTAACTGGTTCACAAATGAAACATG
GATACACACGCCCACACTTTTTGATCCCGCCCTTCGTACCTTCAGTCGCG
TTAGAGACGAAAGTAAAGTGTTGTACACACCCTGGCGGGCACCAGGAGCC
GCCCCGATTTACAGCCCTTGTGGTGTATCCGGTGGTAACCCGAATGGTTG
CGGTGCACTGAAATGTGGGCAGAAGACCGGCGGTTACGGTCACGGTCAGA
GAGCAAAGGATGTTGAATTCGTGCATAATATTTCTGTTACGACATGGAAA
CGAGGCCAAGAGGTTGAGGTAAAAGCACACAAAGTTGACtgcttgttttt
ctttacacaaataaaaattaattaacttttttagtcGTGCTTTTTGTCTA
AAAGATACCGAATTCCATTCTCATCCAAACGAACGATGATTAATctaaaa
tttaatcatttttaattgCAGGTGGCTTGGGCGATCTATGTGAATCATGG
CGGAGGTTACTCTTATCGGCTGTGTAAAATGCCAAAAGAAGGACGACCAG
GTTAGCAATATTGTTTTATTGTAAGGTTTGAGAATTAAAAGCCGTAAAGA
GATTCTATGGAAACAACACTAATGATATCCTAAAAGTCCTTAAAAATAAA
CGGTTTGTGATCTTACAGTTAGATTGTTGTATCTTTAAAAATCCTTTTTG
GCTGCTTTACATAATGAAGAAAAAGCTTCAACTGAGAGTTTGGCATAGTG
ATTTATTATTACTGTTTACACTgtctgcaccccaaaatgttggtaaattt
tgtttttcttctgacGCGAAAGAAAAGCTTTGGAAAGGAAAAAATGGACT
TGTTACAACTTATTTACCCCCATAAGAATCTTTCCTGTTGCATTATTCAT
TCTCAAAGTTTTTCAGATGATCAATATacaagtttgaaatttcatatttt
tacgtcactgcaccccaaaatgtaggttcACTTTTTCATTCATAACTTTC
TAAAAAATCGACCAATATTCATGGTTTTTGGTACGAAAGTGTCTGATAGG
ATTGCGAAACGATATACCTTCTTGGAATCGGTAAAGGTAGGAAAATGTTT
GCTAAAACcgaaaaaaatctatttttgcaccccaaaatgtaggtaAATTG
CAGATCAAATAACGACGATAACGTCAAGTTTTTGGTTATCTGGCGTAAAC
CTAGCGTAAGCTGAGgtaaaaagaagtcattgtaatgCACTTTCTATTTT
TGGGTTCAAACGTTAGTGCACTTGCACGATTTCAAGGAGGaaagtcaaga
aaatgactAAGAAAAACTTCACCTTGAAACTACAATGCAATGGTGTAATG
GTGTAGGACTTATCTCTTGATGGTGAAGAACTAGGGGCTCGGAAACCCTA
AACTTGATAGTAATTTATCTCTTTTTTTCGGAAATACCCTCGGTTGATGG
GGAAAATGGGCAAATCAAGGGAATAATCAACATTAAAATTAATCACAAAC
TTATAGGCTATCCATTACAAAAGTTTTCGGGCAATACACATACTGAATAA
ATTTTAGTGAACGTCAAACTAAAATcctacattttggggtgcagacAGTG
TAGATATCATGAAAGTAATTGATCAAGGGTACGATGGCCCGGAGATGTCA
CTGTTTCGTCACAAAAATTCTTagtttcatcacaaaattttttggtttCA
TCATAAAAATTCTTggtttcatcacaaaatttttagtttcgtcacaaaaa
ttcttagtttcatcacaaaaatttttagtttcatcacaaaattttttagt
TTCATCACAATTTTTCAGTGTTTCATCACAGATTTTCAGTGTTTCGTCAC
AAATTTACAGGACTTTTCAGTGTTTCattattaatatatttttttatgaa
actaaaaaaaactttttttcttgtggcGGTAGGATCAGGCGAAAACTGGA
TCAGTCACAAGATCCTGTTTTCATATTATTTTGCGaaaaagaaatacaaa
gaaaactGAGAAGCTCGTTTTTCATAGGAATTAGTTTTCAGGAATCAGCA
CATCTCTCTGGTCagccaaaagatttttttctcgccatttaatttcgcga
attaaggggtcattcgcaaaattttctNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAACAAGAAAAGGGTGGTGGA
CACTACTACACCTAAGAGAACGAATAAATTCGTTTGCATCAGATTAAGAG
aattataaatttgaaaaccgagtcgaaaagcttaaaatcatgtATCATGG
GATGTTGACTTATCTTGGTAACTGCGTTCTGAAAAGGaggcctgaaatat
ttttcaatatctcAAGAAATGAGTATCGAAGAGTATCGCAGTGGGAAAAT
ACTAATCACGTTTTCATCAACACCCTTAGATCGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNATTAATAATGAAACACTGAAAGTTTCGTGATGAAACACT
GAAAAGTCCTGGAAAGTTGTGACGAAACACTGAAATTCtgtgatgaaact
aaaaatttcatATGACAAAACTAAAAACTTTGTGACGAAACTAAGAACTT
Ctgtgatgaaactaaaaattttatgtgacgaaactaaaaatattgtgatg
aaactaaaaatttcatATGACAAAACTAAAAACTTTGTGACGAAACTAAG
AACTTCtgtgatgaaactaaaaattttatgtgacgaaactaaaaatattg
TGATGAAACTAAAGATTTTGTGATAAAACACTGAAATTTTGTGACGAAAC
AGTGACATCTCAGGGCCATCGTACAAGGGTGAATTAAATTTTGTCAGTAA
ATGAGTAATCGACTTTTAAGACTCGAGCCTCTATGTGTGAGAGTAAATAA
CAATACAAGGCTATCAGCTGAAGGTGTTTCTTCTTTAAGTAAGTATgtcg
aaaaaaatataaaaaagtttaaagagaGGATAAGCAGACTGTCTTTGGAg
caattttaccattttgttaTTTATATTTTGGATATTAGGTTTGACGGAGG
AATGTTTTCAGAAGACTTCTCTCCAATTCGTGGGTGATCATCAATGGATA
CAATGGGGTGAGGACGAAACGTCTAGGAGGGAGATAGCAGCAGTCCGAAC
AAACAACGGTACCTTCCCTCCTAAATCACAATGGACCAAAAACCCAATCC
CGGCGTGCGTGGGTCAAACAGGCGGCTTCTTAGACCCGCACCAATGTCTA
ATGGGTACGCAATTTCCCGCTCCAGGACCAGGCTTGAGTGGATTTGGGAT
CAATTTGTACggaacggagaaaatttttcccTTCTCGATTGTTGATTTAG
TGAAGGTGCCTGAGAATTTGGACGTTGGAGAATATGTGTTGTCGTTCAGA
TGGGATACTGAACAAGGACATCAAGTGTGGAACACATGTGCTTCAATTCG
TGTCGAATAATAAAATGTTGTCATATTTATGTTAATTGACGATTTAAATT
TAGAGTCTGAATTCACTTCCAATGATAAAGTTTATGGCGAGCTCGCAATA
TAAGCAGACCTGAATTCGTCGGGTTTTCGTGtcgtcaaaatcgaaaaaga
cGGACTTTTCATGTCTCAAACTTCTCCGAAGGAAACAAACGTATTCCTAA
GCTTTCTGTGTTGTCCCAATCGAATTTGTTTGTTCCATAAGCCAAGTGAT
TTGCACTTTGCTCGAACCCGGAACTTTAGATCAAGAGTTAAGCACGCTTC
AACTCGAATACCGCTGCTTTTTTATTAATCATACAAATCTGAGGTTCCAA
CCAAACTTACATATAGGAAACAATTACATGgtctaaatcatatttctgaG
AATGACTTacaaaaatatatcttttattagaaacttgtgaaTCGAGATGA
GACGTGATCACTTCGCAGATTTTACATATTATACCTAAAGGGAACGAATT
TTGGCGAGCAGCAAAAATCCTAAATAGTTTTGAATTTGCCGAGGAACTCA
ACTTGCAAAGAcgaaattttgtttattttgacgaaaattaatTTACTTTA
CAAAAGCactttaattttcgaaaataaattcccttaaggtatgtaacttt
taatatataataaataaaattttgctAACCAATATGAAAAGGTAATTTCT
TACTTAAAACAAAACTTATGAATACATTTATATGCAATAAATTAATGATT
AGGTGAGAATCCTTTGTTATGTACAATGAaaaactaccgggtgcgccaat
gataacaaaaaatttcctaTTATCTGTAAACATTATACATAATTAGACAG
TATGGTTTTGTCATGACTCAAAATAAAGTCATGAACCTTTTTATAcagaa
atactaaaaaaatacTATACTAAAGTACTTTAGTTTTCTAAAATAAGTTC
CCTTCAAGGTATGTAACTTTtaatatataataaataaaattttgctAACT
AATATGAAGGTAATTTCTTACTTAAAACAAAACTTATGAATACATTTACA
TGCAATAAATTAATGATAAGGTGTTATTTGTTATGTACAATGAAAAACTA
CCAGGTGTGCcaataataacaaaaaatttcctatatcTTACCGGCTCTTT
TTatgccggcccttattggcgttatttttgggaaggtggcgtaaaaaggg
cctaTAAGGTATCTGTAAACATTATACGCAGTTGTTGCGTTTATTGTCAT
GAttcacaaaaaagtcataaaacatttttttccgaatATATACAGAAAAG
AACAAAATCTCGTTTACAACCAGAATCAGTCATTTTGAAGAAAGAATTTA
ATGTTAATAGGAATTTTTTGATCGCATGTTTGGTTTTGATGCAATTTTTG
GATATATTTTAATAAGTTGCTAGTATTGATTTGCTATTTTCCAggaatat
tttaaaacaaaagtgaatATTGTTCAAATGACGACACTTTTACGTAAGGC
CTAATTGCGACGATATCCGAAATTTCTACTAATATTGTCAAATGAAACTT
AAATTATTAATAAGACTTATTTTTGGTGAGGCAAACACAATTTACATTGT
TTTAACCTTCTTTCGtgaaacaaacttttaaaagtgTCGAAGGTCGAAAG
CCTTAGGGGCTaccaaaaatttcatgaatcATTGGGGCAgtttttttgcc
tgggacctaaacctaGGCTGACGCTGACGTTttacttttctaaaaaattt
ttctcgcttgaaaaataaaagtaataaaaccAAATCAAATTAAACGGAAT
CACAAAACTGCGCCATAAATCCAAATTTCTTGGAAGTTTAACGCGTTGTG
ACCGACCACTTGTGGTTGCTCAGCATAAATTCCATCAGCCTGTCTCATAC
ATGAAAAGATTCTGCGTACCCCCATGTCTCCTGTATTCGCAAACCATGTC
ATGGTGGTCTGCTCGTTGACGGCTAGTATGGTCTTCAGATCAATTAGATC
ACTTCGTTGCGCATATTGAGGGTATAAGATATAATCGTGACGATTCACAA
ACACAACATAGTCGATGAACACACGATTGTTGAATTCCGCCTAAATAGAC
AGAAATGAACAAAATTGACAGAACACAGTATTTGAAAACGTTCTCTCGTT
ATCTTCACCACAAAACTGTTCATTTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002079-exon-sc0000018-1491911889:844239..845006 | TCONS_00002079-exon-sc0000018-1491911889:844239..845006 | Clytia hemisphaerica | exon |
| TCONS_00002079-exon-sc0000018-1510915933:844239..845006 | TCONS_00002079-exon-sc0000018-1510915933:844239..845006 | Clytia hemisphaerica | exon |
| TCONS_00002079-exon-sc0000018-1575043694:844239..845006 | TCONS_00002079-exon-sc0000018-1575043694:844239..845006 | Clytia hemisphaerica | exon |
| TCONS_00002079-exon-sc0000018-1491911889:845160..845238 | TCONS_00002079-exon-sc0000018-1491911889:845160..845238 | Clytia hemisphaerica | exon |
| TCONS_00002079-exon-sc0000018-1510915933:845160..845238 | TCONS_00002079-exon-sc0000018-1510915933:845160..845238 | Clytia hemisphaerica | exon |
| TCONS_00002079-exon-sc0000018-1575043694:845160..845238 | TCONS_00002079-exon-sc0000018-1575043694:845160..845238 | Clytia hemisphaerica | exon |
| TCONS_00002079-exon-sc0000018-1491911889:848127..850717 | TCONS_00002079-exon-sc0000018-1491911889:848127..850717 | Clytia hemisphaerica | exon |
| TCONS_00002079-exon-sc0000018-1510915933:848127..850717 | TCONS_00002079-exon-sc0000018-1510915933:848127..850717 | Clytia hemisphaerica | exon |
| TCONS_00002079-exon-sc0000018-1575043694:848127..850717 | TCONS_00002079-exon-sc0000018-1575043694:848127..850717 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:844239..850717 + |
Blast
The following BLAST results are available for this feature:
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