TCONS_00002067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002067
Unique NameTCONS_00002067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002067 ID=TCONS_00002067|Name=TCONS_00002067|organism=Clytia hemisphaerica|type=transcript|length=3585bp
CTGAAACATAATGTCATTTTAAATCAGACAAAGACACAAGAAGGTTAACA
AGAAGGTTACAAGAATATCCAACGACCATGGAAGGTCTATTATTGACGCT
GCTTTTGATATGCTCGATTTCATTACCTTCAGAAGCTCAGAGCACTACTC
TTTCGCCTGCAAACACTACCAACTCTCTCAATACAACTACTACTTCTCCT
TTTACGACTACAACAACAGTCACGACCACAACCACTACCCCTCCTCCAAC
CACAACCACGACTCTTCCTCCAACTACAACCACAACCACTACCCCTCCTC
CAACTACAACCACTACCCCTCATCCAACTACAACCACTACCACTCCTCCA
ACTACAACCACTACCCCTCCTCCAACTACAACCACTACCCCTCCTCCAAG
TACAACCACTACCCATCCTCCAACTACAACCACTACCCCTCCTCCAACTA
CAACCACTACCCCTCCTCCAACTACAACCACTACCACTCCTCCAACAACA
ACCACTACCCCTCCTCCAACTACAACTACTACCCCTCCTCCAACTACAAC
CACTACCCCTCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACTA
CTACCCCTCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCACT
ACCACTCCTCCAACTACAACTACTACCCCTCATCCAACTACAACTACTAC
CCCTCCTCCAACTGCAACTACGACCACTACCCCTTCTCCAACTACAACTA
CAACTACAACCACTACACCTCCCCCAACTACGACCACAACCACTGCCCTT
CCTCCAACTACAACTACAACCACTACCCCTCCTCCAACTACAACTACAAC
CACTACCCTTCCTCCAACTACAACCACTACACTTCCTCAAACTACAACCA
CTACTCTTCCTCCAACTACAACCACAACCACTACCCCTCCTCCAACTACG
ACCACTTCCCCTCCTCCAACTACGACCACTACAACCATCTCTCCTCCAAC
CACAACCACTTCCCCTCAATCAACTACTATCACTTCTCCTCCAGAAGACT
CGACTCTTACCATTACAACCTCAACGAATACAACAACACCGGAGCCTGTA
ATCTTCGCAAACAAtatcatattcaaatttgttgACGATTACTCGTCTAC
CATCATTAAAGCAGGTGGGAAAGATGCAGCTGAACAGGCCATTTGTGAGA
ATTGTCGAGACGAGTTGAATATACCTGAGAAGGATTTCCATAATTGTTCT
ATCAGTGAAGGCAGTGTCAAAGTGACGTTCATTATGAATCAAACAGCCTT
CTTCGCCAACCACACCGTTCGTAAGTTGAATATGATGGTTAAAGACGATC
TCTTCCAAGTCATGATCGGTGGCTATCGGTTGACAACAAAACCAGGATCG
GTCTTGATAGACAGTGTCATGCAAACAGCATCATCTGATCAGCAAAACAC
ACCATCACCTGTGATATCGGCAAATACCGACACCGACGGAGATGACGACG
ATGATGACGGTTCTTTGATCGCAATCGTTATCTTAATCATTATCATCATC
CTAATCATCATTCTGGTCCTCATTTTATTGTGGATGATCAGAAAACGAAA
AACTATCACCGATGAGAAGGTTTGTAAATATCTTTTATATATCAAGAACG
AGCTGATGTTGAACTGACAATATCAGAAGTGTCTTATCTGATCTCAATAT
TATCCATTATGTCTTTTTATAACGAATGCTCCATACAAAGCACACACAAA
ATAAACGGCAAGAGGTATATTCTAGCCTTTTTAATACATAATCAAGGGCA
TAAATATCTAAATTGAGTATTAAGTAACAATTAACAAGATCTGTTTCGAT
TATTTTCAGCAGCCTGACGAAGAAGCAAGCAGAGGGGCAACATCCTTATC
AGCAGAGACAAACGACACTTTTGACAACGGTAAGGGTGATTTATTTCTCA
AAGTATAATAGGAAAGATTCTAGATTCTAATCATTTCTGAACAATTGGTT
AGCAATAGGAGTGGGGTAGAACGCTTAGCAGTTTTCAAAGAGGCGAAAAG
TGATACACGCTCAATTCGATGTAGGTGGCGCACGGATGTTTGCAAATGAT
CTAATTAATTCCTTTATTTACAGAATTGAAGAGTGAAGCAACATTGGGTC
GAATCAACTTTGGCTCCAATTTTAACGATGATGAAGTCCATGTAAATGAA
CAATGGCAGGGGCTGAGTCAGATACAATATTTGTATGGAACCGACAGAGA
ATGGAAATTCGAAGATGACGAAATATCGACAGTTGATGTGGACGCGACGA
GTCGTATTCGATTCTTGTTTGAAAGTCAGAACTCCTTACGACATCTTATC
GACGAGATGAAAGAGGGTGACGAGGGGCGAACTATTTATGATGAAGATGG
AACTGAAATGGAAACATACCGTTCAAATGGCGGAGGGGCGGAAAACCCAC
CATCCTCGGGCGCAAGTGATGATAAtcaagatgaaaatgaaaataacgaT
GACGAAATGGATAATACCAATGAAGAGGATAATGATAGTGATGATGATTC
TAGTCCTCAAAGTAGTAGCCCTAACAAAGAACCACCTGCTCGGCCACCGC
CCCCAGGACGCCCGAAGCGCCCTCTTCCACCATCAAGGGATTCTTCAAAT
GTGTGATAAGAACTGTTTTAAGATTAATTTTAGTAAATATTTTGTACATA
AAGAGTATTTTTATGAGTAGAgataaaaatatatgaaaatgaTAATGTAA
TATTTCTACCTTGTCATGCGTTGGTTGATTTTTAAGTCCCCCAAAAAAGA
ATAGATGAAATCGTTGGCCCAATTCGAAAATTTGGTAGAAAAAGTCTTTT
TAGTTGGTACCCTCGAAGAAAATCTCCCCCTCCGTCTCTTCGAACATTTA
GAAATCGGGAATAGGTCACAATACACTTTTTAACGATATTTTATCCAAAT
ATTTATGAAAAGTCAAACTTAGAAATATGGTTAACGATACTAAAGACTAC
TCATTCTCAAAATTTGTGTTCGCACAACACGAGAAGGGAAGAAAGTTATT
CTTAATTTTGCTCAAAAAGGCTTTTAATGCAAAGTCAGAAGTCTTTtaca
aatacagttgacgctctttaattcgatcttcaaagagaattggattttca
tcgaataaggggccttatcgaataaaggagcgtcgtttatgagagtttcc
tgttgacggggactttcaatattatcgaataagggagcctatcgaatagt
agaacgtcgaattagagggCGTCAACAATAAGTTTTTTTCCTTGATTACA
CCAAACAGACTATTAAAAATTAACTAGCCACCATTATGGAATAAAGTGTT
TGAGATACGGACTTCTTACGCAAAACCGAACGTTTTCTTCTGAAGAAACt
ttggcgggaatttgatgTTACCGCTTAAAAGCGTGACTTAAGGCATGAAA
TAACATAAATTCAGGAAATATGTATTCTCGATCATTGAACggttatttta
taagaatgttccaTTTCCATTTCATCGTGGAAATTCTTGAATTCTGGGGg
gaatcatcctaaaatattcttacggtattagTATA
Run BLAST on NCBI

transcript from alignment at sc0000018:757659..761365+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002067 ID=TCONS_00002067|Name=TCONS_00002067|organism=Clytia hemisphaerica|type=transcript|length=3707bp|location=Sequence derived from alignment at sc0000018:757659..761365+ (Clytia hemisphaerica)
CTGAAACATAATGTCATTTTAAATCAGACAAAGACACAAGAAGGTTAACA
AGAAGGTTACAAGAATATCCAGTAAGTACTGATTTGAGTTTTATCTTTAC
AACTGATTACAGCAATCTCGTGCAAGAAGTGAAAATGATTTGATGATCAA
AGAAACTTCTaatgaattatttttgtttCGTTTTAATTTTCAGACGACCA
TGGAAGGTCTATTATTGACGCTGCTTTTGATATGCTCGATTTCATTACCT
TCAGAAGCTCAGAGCACTACTCTTTCGCCTGCAAACACTACCAACTCTCT
CAATACAACTACTACTTCTCCTTTTACGACTACAACAACAGTCACGACCA
CAACCACTACCCCTCCTCCAACCACAACCACGACTCTTCCTCCAACTACA
ACCACAACCACTACCCCTCCTCCAACTACAACCACTACCCCTCATCCAAC
TACAACCACTACCACTCCTCCAACTACAACCACTACCCCTCCTCCAACTA
CAACCACTACCCCTCCTCCAAGTACAACCACTACCCATCCTCCAACTACA
ACCACTACCCCTCCTCCAACTACAACCACTACCCCTCCTCCAACTACAAC
CACTACCACTCCTCCAACAACAACCACTACCCCTCCTCCAACTACAACTA
CTACCCCTCCTCCAACTACAACCACTACCCCTCCTCCAACTACAACCACT
ACCCCTCCTCCAACTACAACTACTACCCCTCCTCCAACTACAACCACTAC
CCCTCCTCCAACTACAACCACTACCACTCCTCCAACTACAACTACTACCC
CTCATCCAACTACAACTACTACCCCTCCTCCAACTGCAACTACGACCACT
ACCCCTTCTCCAACTACAACTACAACTACAACCACTACACCTCCCCCAAC
TACGACCACAACCACTGCCCTTCCTCCAACTACAACTACAACCACTACCC
CTCCTCCAACTACAACTACAACCACTACCCTTCCTCCAACTACAACCACT
ACACTTCCTCAAACTACAACCACTACTCTTCCTCCAACTACAACCACAAC
CACTACCCCTCCTCCAACTACGACCACTTCCCCTCCTCCAACTACGACCA
CTACAACCATCTCTCCTCCAACCACAACCACTTCCCCTCAATCAACTACT
ATCACTTCTCCTCCAGAAGACTCGACTCTTACCATTACAACCTCAACGAA
TACAACAACACCGGAGCCTGTAATCTTCGCAAACAAtatcatattcaaat
ttgttgACGATTACTCGTCTACCATCATTAAAGCAGGTGGGAAAGATGCA
GCTGAACAGGCCATTTGTGAGAATTGTCGAGACGAGTTGAATATACCTGA
GAAGGATTTCCATAATTGTTCTATCAGTGAAGGCAGTGTCAAAGTGACGT
TCATTATGAATCAAACAGCCTTCTTCGCCAACCACACCGTTCGTAAGTTG
AATATGATGGTTAAAGACGATCTCTTCCAAGTCATGATCGGTGGCTATCG
GTTGACAACAAAACCAGGATCGGTCTTGATAGACAGTGTCATGCAAACAG
CATCATCTGATCAGCAAAACACACCATCACCTGTGATATCGGCAAATACC
GACACCGACGGAGATGACGACGATGATGACGGTTCTTTGATCGCAATCGT
TATCTTAATCATTATCATCATCCTAATCATCATTCTGGTCCTCATTTTAT
TGTGGATGATCAGAAAACGAAAAACTATCACCGATGAGAAGGTTTGTAAA
TATCTTTTATATATCAAGAACGAGCTGATGTTGAACTGACAATATCAGAA
GTGTCTTATCTGATCTCAATATTATCCATTATGTCTTTTTATAACGAATG
CTCCATACAAAGCACACACAAAATAAACGGCAAGAGGTATATTCTAGCCT
TTTTAATACATAATCAAGGGCATAAATATCTAAATTGAGTATTAAGTAAC
AATTAACAAGATCTGTTTCGATTATTTTCAGCAGCCTGACGAAGAAGCAA
GCAGAGGGGCAACATCCTTATCAGCAGAGACAAACGACACTTTTGACAAC
GGTAAGGGTGATTTATTTCTCAAAGTATAATAGGAAAGATTCTAGATTCT
AATCATTTCTGAACAATTGGTTAGCAATAGGAGTGGGGTAGAACGCTTAG
CAGTTTTCAAAGAGGCGAAAAGTGATACACGCTCAATTCGATGTAGGTGG
CGCACGGATGTTTGCAAATGATCTAATTAATTCCTTTATTTACAGAATTG
AAGAGTGAAGCAACATTGGGTCGAATCAACTTTGGCTCCAATTTTAACGA
TGATGAAGTCCATGTAAATGAACAATGGCAGGGGCTGAGTCAGATACAAT
ATTTGTATGGAACCGACAGAGAATGGAAATTCGAAGATGACGAAATATCG
ACAGTTGATGTGGACGCGACGAGTCGTATTCGATTCTTGTTTGAAAGTCA
GAACTCCTTACGACATCTTATCGACGAGATGAAAGAGGGTGACGAGGGGC
GAACTATTTATGATGAAGATGGAACTGAAATGGAAACATACCGTTCAAAT
GGCGGAGGGGCGGAAAACCCACCATCCTCGGGCGCAAGTGATGATAAtca
agatgaaaatgaaaataacgaTGACGAAATGGATAATACCAATGAAGAGG
ATAATGATAGTGATGATGATTCTAGTCCTCAAAGTAGTAGCCCTAACAAA
GAACCACCTGCTCGGCCACCGCCCCCAGGACGCCCGAAGCGCCCTCTTCC
ACCATCAAGGGATTCTTCAAATGTGTGATAAGAACTGTTTTAAGATTAAT
TTTAGTAAATATTTTGTACATAAAGAGTATTTTTATGAGTAGAgataaaa
atatatgaaaatgaTAATGTAATATTTCTACCTTGTCATGCGTTGGTTGA
TTTTTAAGTCCCCCAAAAAAGAATAGATGAAATCGTTGGCCCAATTCGAA
AATTTGGTAGAAAAAGTCTTTTTAGTTGGTACCCTCGAAGAAAATCTCCC
CCTCCGTCTCTTCGAACATTTAGAAATCGGGAATAGGTCACAATACACTT
TTTAACGATATTTTATCCAAATATTTATGAAAAGTCAAACTTAGAAATAT
GGTTAACGATACTAAAGACTACTCATTCTCAAAATTTGTGTTCGCACAAC
ACGAGAAGGGAAGAAAGTTATTCTTAATTTTGCTCAAAAAGGCTTTTAAT
GCAAAGTCAGAAGTCTTTtacaaatacagttgacgctctttaattcgatc
ttcaaagagaattggattttcatcgaataaggggccttatcgaataaagg
agcgtcgtttatgagagtttcctgttgacggggactttcaatattatcga
ataagggagcctatcgaatagtagaacgtcgaattagagggCGTCAACAA
TAAGTTTTTTTCCTTGATTACACCAAACAGACTATTAAAAATTAACTAGC
CACCATTATGGAATAAAGTGTTTGAGATACGGACTTCTTACGCAAAACCG
AACGTTTTCTTCTGAAGAAACtttggcgggaatttgatgTTACCGCTTAA
AAGCGTGACTTAAGGCATGAAATAACATAAATTCAGGAAATATGTATTCT
CGATCATTGAACggttattttataagaatgttccaTTTCCATTTCATCGT
GGAAATTCTTGAATTCTGGGGggaatcatcctaaaatattcttacggtat
tagTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001086XLOC_001086Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002067-exon-sc0000018-1491911889:757659..757729TCONS_00002067-exon-sc0000018-1491911889:757659..757729Clytia hemisphaericaexon
TCONS_00002067-exon-sc0000018-1510915933:757659..757729TCONS_00002067-exon-sc0000018-1510915933:757659..757729Clytia hemisphaericaexon
TCONS_00002067-exon-sc0000018-1575043694:757659..757729TCONS_00002067-exon-sc0000018-1575043694:757659..757729Clytia hemisphaericaexon
TCONS_00002067-exon-sc0000018-1491911889:757852..761365TCONS_00002067-exon-sc0000018-1491911889:757852..761365Clytia hemisphaericaexon
TCONS_00002067-exon-sc0000018-1510915933:757852..761365TCONS_00002067-exon-sc0000018-1510915933:757852..761365Clytia hemisphaericaexon
TCONS_00002067-exon-sc0000018-1575043694:757852..761365TCONS_00002067-exon-sc0000018-1575043694:757852..761365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:757659..761365 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0307582	0	0.0465637	0	0.0446934	0	0.0983921	0.0353624	0	0	0.0279952	0.0703888	0	0	0	0	0	0.573372	0.111587	0.066469	0	0	0	0.108509	0.224198	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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