TCONS_00002064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002064
Unique NameTCONS_00002064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1928

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002064 ID=TCONS_00002064|Name=TCONS_00002064|organism=Clytia hemisphaerica|type=transcript|length=1928bp
ACCACTACACCTCCTCCAACTACAACCACAACAACTACATCTCCTCCAAC
TACAACCACAACCACTACTCCTCCGCCAACCACTACCACAACCACTACCC
ATCCTCCAACTACAACCACAACCACTACCCCTCCGCCAAACACTACCACA
ACCACTACCCCTCCTCCAACTACAACCATTACACTTCCTCCAACTACAAC
AACTACACCTCCCCCaactacaactacaacaactACACCTCCCCCAACTA
CAACTATAACCACTACCCTTCCCCCAACTACGACCACAACCACTACCCTT
CCTCCAACTACAACCACTACCACTACCCCTCTTCCAACTACAACTACTAC
TCTTCCTCCAAATACAACCACAACCACTACCCCTCCTCCAACTACAACTA
CAACCACTACACTCCCTCCAACTACAACAACTACTCTTCCTCCAACTACA
ACCACTACCCCTCCTCAAACTACAACCACTACCCCTCCTCCAACTACAAC
CACAACCACTACCCCAACTCTAACTCCAGCCACAACTACTACCCCTCCTC
CTACTATATCTACAGCCCCATCTACGGAAACTTCAAACCTAACAACAAAT
GGAACTTCAATTGCAAGCAATGGGACAAACAATGAGACTTCATCCGAAGA
AACAGGAACAAGCGGAATAAACGAGGATACCACTATTCATGACAGTGTTA
TGAGATTcaaattcattgaaaaatatgaaacgCTAATTACAGAGTACGGC
AGCATGGAAGCAGCTACAGAGAAGATTTGCAACGACACAAGAGAAAACTT
AAAATTGGAAGTGGATCAATTCGGTAACTGCAATCTGACTAAAGGCAGTA
TCGTCGTGTCTTTTCAAGTTATTCTAACTGGAAACAAATACAACCAAACA
CTCAGAAGATTGAATTTGTTTGTATACAACAATTTGTTCACAGTGAAGAG
GCCTGATGGAACAAAGTACAATACAGTGCCTTCTTCAGTTTATGCAGATG
ATGTGCACCAGGTGGAATCAGGGGGCGGAGTGGCGGAGGAATATGGGAAC
GAGGTTGTTGAGAAGAAGACGAGTGATGATGAATGCATTGTGATTGCTTT
GCtcgtttttttcattgtttgtgGCATCATATTGGTCCTCATCTTGCTTT
ACTTCTTGTTAAGgaagaaaaaacatcaaaaagttcTTCCAATCGAAGAA
GAAGATGAGAAGAAGGAACAATATCTTCACCCGATGCCCTGGTTCTACTC
ACCACCTCCTAAAGAAGATATAGcctATGACGATAATGACGAGGCATTAG
CAGATGTAAGGAGGTTGTATGGAAGTAAATGGGTACTTGAAGAGGACGAT
CAGGTCTACAACGTCccaaaagacaaagaagaagaagatggaaGTGCTGA
GTTGGATATTCGAAGATTGTACCGAAGTCGTTGGATTTTAAGTGAGGAAG
CAGTAGAAGATGAGTTGTCTTTTTCACAACAAGAAGATGAGGAAGATGAC
GAAATTGAAGGAGACATTCGACGTTTGTATCAAAGTCGTTGGACATTGAA
AGATGAACCCTTATTATTGCATCCTTCTAGTGCTTTATCCCATAGACCTC
ATTCTTCAAGAGCAAGTTCAGCGAGAACTTCTGCTCGTGGGAGTAGTATC
TCTTTACAATCGAGCACAAACTCGCTGAAAGATAGCCAAATCTAGGCTAT
TATGGTTTATGAGAACTTATGTTGTTATGACAAAGTTTATGGGAAACTAA
ATTCAATATAATTGTATGTAAAGTATTCTTAACAAGTTTATAATAGATTT
TTCATGCTGAGAAAGTCGAACATTTCCACACGGGCCAAATCTGGCCAact
ctatatttttattttttgcggTGTTGCTAtgacaaacaataaaaaaaatc
gtaTAATAAGTCATtaataattcacttt
Run BLAST on NCBI

protein sequence of TCONS_00002064-protein

>TCONS_00002064-protein ID=TCONS_00002064-protein|Name=TCONS_00002064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp
TTTPPPTTTTTTTSPPTTTTTTTPPPTTTTTTTHPPTTTTTTTPPPNTTT
TTTPPPTTTITLPPTTTTTPPPTTTTTTTPPPTTTITTTLPPTTTTTTTL
PPTTTTTTTPLPTTTTTLPPNTTTTTTPPPTTTTTTTLPPTTTTTLPPTT
TTTPPQTTTTTPPPTTTTTTTPTLTPATTTTPPPTISTAPSTETSNLTTN
GTSIASNGTNNETSSEETGTSGINEDTTIHDSVMRFKFIEKYETLITEYG
SMEAATEKICNDTRENLKLEVDQFGNCNLTKGSIVVSFQVILTGNKYNQT
LRRLNLFVYNNLFTVKRPDGTKYNTVPSSVYADDVHQVESGGGVAEEYGN
EVVEKKTSDDECIVIALLVFFIVCGIILVLILLYFLLRKKKHQKVLPIEE
EDEKKEQYLHPMPWFYSPPPKEDIAYDDNDEALADVRRLYGSKWVLEEDD
QVYNVPKDKEEEDGSAELDIRRLYRSRWILSEEAVEDELSFSQQEDEEDD
EIEGDIRRLYQSRWTLKDEPLLLHPSSALSHRPHSSRASSARTSARGSSI
SLQSSTNSLKDSQI
Run BLAST on NCBI

transcript from alignment at sc0000018:753866..756023+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002064 ID=TCONS_00002064|Name=TCONS_00002064|organism=Clytia hemisphaerica|type=transcript|length=2158bp|location=Sequence derived from alignment at sc0000018:753866..756023+ (Clytia hemisphaerica)
ACCACTACACCTCCTCCAACTACAACCACAACAACTACATCTCCTCCAAC
TACAACCACAACCACTACTCCTCCGCCAACCACTACCACAACCACTACCC
ATCCTCCAACTACAACCACAACCACTACCCCTCCGCCAAACACTACCACA
ACCACTACCCCTCCTCCAACTACAACCATTACACTTCCTCCAACTACAAC
AACTACACCTCCCCCaactacaactacaacaactACACCTCCCCCAACTA
CAACTATAACCACTACCCTTCCCCCAACTACGACCACAACCACTACCCTT
CCTCCAACTACAACCACTACCACTACCCCTCTTCCAACTACAACTACTAC
TCTTCCTCCAAATACAACCACAACCACTACCCCTCCTCCAACTACAACTA
CAACCACTACACTCCCTCCAACTACAACAACTACTCTTCCTCCAACTACA
ACCACTACCCCTCCTCAAACTACAACCACTACCCCTCCTCCAACTACAAC
CACAACCACTACCCCAACTCTAACTCCAGCCACAACTACTACCCCTCCTC
CTACTATATCTACAGCCCCATCTACGGAAACTTCAAACCTAACAACAAAT
GGAACTTCAATTGCAAGCAATGGGACAAACAATGAGACTTCATCCGAAGA
AACAGGAACAAGCGGAATAAACGAGGATACCACTATTCATGACAGTGTTA
TGAGATTcaaattcattgaaaaatatgaaacgCTAATTACAGAGTACGGC
AGCATGGAAGCAGCTACAGAGAAGATTTGCAACGACACAAGAGAAAACTT
AAAATTGGAAGTGGATCAATTCGGTAACTGCAATCTGACTAAAGGCAGTA
TCGTCGTGTCTTTTCAAGTTATTCTAACTGGAAACAAATACAACCAAACA
CTCAGAAGATTGAATTTGTTTGTATACAACAATTTGTTCACAGTGAAGAG
GCCTGATGGAACAAAGTACAATACAGTGCCTTCTTCAGTTTATGCAGATG
ATGTGCACCAGGTGGAATCAGGGGGCGGAGTGGCGGAGGAATATGGGAAC
GAGGTTGTTGAGAAGAAGACGAGTGATGATGAATGCATTGTGATTGCTTT
GCtcgtttttttcattgtttgtgGCATCATATTGGTCCTCATCTTGCTTT
ACTTCTTGTTAAGgaagaaaaaacatcaaaaagttcTTCCAATCGAAGAA
GAAGATGAGAAGAAGGAACAATATCTTCACCCGATGCCCTGGTTCTACTC
ACCACCTCCTAAAGAAGATATAGGTCAGTTTTACATAGCTTCATATNGAC
AATACATTCACCCGATGCCCTGGTTCTACTCACCACCCCCTAAAGAAGAT
AAAGGTCAGTTTTACATAGCTTCATATTGCTTTAAGGAGGAATCTTTAAG
GCATTTAGTTACCATAATACAAAACGAAAGCTCGAAGATCTTTCTGAACT
ACAGTCTCATAGCATTTGCAACAGAGTGTAtactgtatttttttattttt
cagcctATGACGATAATGACGAGGCATTAGCAGATGTAAGGAGGTTGTAT
GGAAGTAAATGGGTACTTGAAGAGGACGATCAGGTCTACAACGTCccaaa
agacaaagaagaagaagatggaaGTGCTGAGTTGGATATTCGAAGATTGT
ACCGAAGTCGTTGGATTTTAAGTGAGGAAGCAGTAGAAGATGAGTTGTCT
TTTTCACAACAAGAAGATGAGGAAGATGACGAAATTGAAGGAGACATTCG
ACGTTTGTATCAAAGTCGTTGGACATTGAAAGATGAACCCTTATTATTGC
ATCCTTCTAGTGCTTTATCCCATAGACCTCATTCTTCAAGAGCAAGTTCA
GCGAGAACTTCTGCTCGTGGGAGTAGTATCTCTTTACAATCGAGCACAAA
CTCGCTGAAAGATAGCCAAATCTAGGCTATTATGGTTTATGAGAACTTAT
GTTGTTATGACAAAGTTTATGGGAAACTAAATTCAATATAATTGTATGTA
AAGTATTCTTAACAAGTTTATAATAGATTTTTCATGCTGAGAAAGTCGAA
CATTTCCACACGGGCCAAATCTGGCCAactctatatttttattttttgcg
gTGTTGCTAtgacaaacaataaaaaaaatcgtaTAATAAGTCATtaataa
ttcacttt

Coding sequence (CDS) from alignment at sc0000018:753866..756023+

>TCONS_00002064 ID=TCONS_00002064|Name=TCONS_00002064|organism=Clytia hemisphaerica|type=CDS|length=3390bp|location=Sequence derived from alignment at sc0000018:753866..756023+ (Clytia hemisphaerica)
ACCACTACACCTCCTCCAACTACAACCACAACAACTACATCTCCTCCAAC
TACAACCACAACCACTACTCCTCCGCCAACCACTACCACAACCACTACCC
ATCCTCCAACTACAACCACAACCACTACCCCTCCGCCAAACACTACCACA
ACCACTACCCCTCCTCCAACTACAACCATTACACTTCCTCCAACTACAAC
AACTACACCTCCCCCaactacaactacaacaactACACCTCCCCCAACTA
CAACTATAACCACTACCCTTCCCCCAACTACGACCACAACCACTACCCTT
CCTCCAACTACAACCACTACCACTACCCCTCTTCCAACTACAACTACTAC
TCTTCCTCCAAATACAACCACAACCACTACCCCTCCTCCAACTACAACTA
CAACCACTACACTCCCTCCAACTACAACAACTACTCTTCCTCCAACTACA
ACCACTACCCCTCCTCAAACTACAACCACTACCCCTCCTCCAACTACAAC
CACAACCACTACCCCAACTCTAACTCCAGCCACAACTACTACCCCTCCTC
CTACTATATCTACAGCCCCATCTACGGAAACTTCAAACCTAACAACAAAT
GGAACTTCAATTGCAAGCAATGGGACAAACAATGAGACTTCATCCGAAGA
AACAGGAACAAGCGGAATAAACGAGGATACCACTATTCATGACAGTGTTA
TGAGATTcaaattcattgaaaaatatgaaacgCTAATTACAGAGTACGGC
AGCATGGAAGCAGCTACAGAGAAGATTTGCAACGACACAAGAGAAAACTT
AAAATTGGAAGTGGATCAATTCGGTAACTGCAATCTGACTAAAGGCAGTA
TCGTCGTGTCTTTTCAAGTTATTCTAACTGGAAACAAATACAACCAAACA
CTCAGAAGATTGAATTTGTTTGTATACAACAATTTGTTCACAGTGAAGAG
GCCTGATGGAACAAAGTACAATACAGTGCCTTCTTCAGTTTATGCAGATG
ATGTGCACCAGGTGGAATCAGGGGGCGGAGTGGCGGAGGAATATGGGAAC
GAGGTTGTTGAGAAGAAGACGAGTGATGATGAATGCATTGTGATTGCTTT
GCtcgtttttttcattgtttgtgGCATCATATTGGTCCTCATCTTGCTTT
ACTTCTTGTTAAGgaagaaaaaacatcaaaaagttcTTCCAATCGAAGAA
GAAGATGAGAAGAAGGAACAATATCTTCACCCGATGCCCTGGTTCTACTC
ACCACCTCCTAAAGAAGATATAGcctATGACGATAATGACGAGGCATTAG
CAGATGTAAGGAGGTTGTATGGAAGTAAATGGGTACTTGAAGAGGACGAT
CAGGTCTACAACGTCccaaaagacaaagaagaagaagatggaaGTGCTGA
GTTGGATATTCGAAGATTGTACCGAAGTCGTTGGATTTTAAGTGAGGAAG
CAGTAGAAGATGAGTTGTCTTTTTCACAACAAGAAGATGAGGAAGATGAC
GAAATTGAAGGAGACATTCGACGTTTGTATCAAAGTCGTTGGACATTGAA
AGATGAACCCTTATTATTGCATCCTTCTAGTGCTTTATCCCATAGACCTC
ATTCTTCAAGAGCAAGTTCAGCGAGAACTTCTGCTCGTGGGAGTAGTATC
TCTTTACAATCGAGCACAAACTCGCTGAAAGATAGCCAAATCTAGACCAC
TACACCTCCTCCAACTACAACCACAACAACTACATCTCCTCCAACTACAA
CCACAACCACTACTCCTCCGCCAACCACTACCACAACCACTACCCATCCT
CCAACTACAACCACAACCACTACCCCTCCGCCAAACACTACCACAACCAC
TACCCCTCCTCCAACTACAACCATTACACTTCCTCCAACTACAACAACTA
CACCTCCCCCaactacaactacaacaactACACCTCCCCCAACTACAACT
ATAACCACTACCCTTCCCCCAACTACGACCACAACCACTACCCTTCCTCC
AACTACAACCACTACCACTACCCCTCTTCCAACTACAACTACTACTCTTC
CTCCAAATACAACCACAACCACTACCCCTCCTCCAACTACAACTACAACC
ACTACACTCCCTCCAACTACAACAACTACTCTTCCTCCAACTACAACCAC
TACCCCTCCTCAAACTACAACCACTACCCCTCCTCCAACTACAACCACAA
CCACTACCCCAACTCTAACTCCAGCCACAACTACTACCCCTCCTCCTACT
ATATCTACAGCCCCATCTACGGAAACTTCAAACCTAACAACAAATGGAAC
TTCAATTGCAAGCAATGGGACAAACAATGAGACTTCATCCGAAGAAACAG
GAACAAGCGGAATAAACGAGGATACCACTATTCATGACAGTGTTATGAGA
TTcaaattcattgaaaaatatgaaacgCTAATTACAGAGTACGGCAGCAT
GGAAGCAGCTACAGAGAAGATTTGCAACGACACAAGAGAAAACTTAAAAT
TGGAAGTGGATCAATTCGGTAACTGCAATCTGACTAAAGGCAGTATCGTC
GTGTCTTTTCAAGTTATTCTAACTGGAAACAAATACAACCAAACACTCAG
AAGATTGAATTTGTTTGTATACAACAATTTGTTCACAGTGAAGAGGCCTG
ATGGAACAAAGTACAATACAGTGCCTTCTTCAGTTTATGCAGATGATGTG
CACCAGGTGGAATCAGGGGGCGGAGTGGCGGAGGAATATGGGAACGAGGT
TGTTGAGAAGAAGACGAGTGATGATGAATGCATTGTGATTGCTTTGCtcg
tttttttcattgtttgtgGCATCATATTGGTCCTCATCTTGCTTTACTTC
TTGTTAAGgaagaaaaaacatcaaaaagttcTTCCAATCGAAGAAGAAGA
TGAGAAGAAGGAACAATATCTTCACCCGATGCCCTGGTTCTACTCACCAC
CTCCTAAAGAAGATATAGcctATGACGATAATGACGAGGCATTAGCAGAT
GTAAGGAGGTTGTATGGAAGTAAATGGGTACTTGAAGAGGACGATCAGGT
CTACAACGTCccaaaagacaaagaagaagaagatggaaGTGCTGAGTTGG
ATATTCGAAGATTGTACCGAAGTCGTTGGATTTTAAGTGAGGAAGCAGTA
GAAGATGAGTTGTCTTTTTCACAACAAGAAGATGAGGAAGATGACGAAAT
TGAAGGAGACATTCGACGTTTGTATCAAAGTCGTTGGACATTGAAAGATG
AACCCTTATTATTGCATCCTTCTAGTGCTTTATCCCATAGACCTCATTCT
TCAAGAGCAAGTTCAGCGAGAACTTCTGCTCGTGGGAGTAGTATCTCTTT
ACAATCGAGCACAAACTCGCTGAAAGATAGCCAAATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001085XLOC_001085Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002064-proteinTCONS_00002064-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002064-exon-sc0000018-1491911889:753866..755138TCONS_00002064-exon-sc0000018-1491911889:753866..755138Clytia hemisphaericaexon
TCONS_00002064-exon-sc0000018-1510915933:753866..755138TCONS_00002064-exon-sc0000018-1510915933:753866..755138Clytia hemisphaericaexon
TCONS_00002064-exon-sc0000018-1575043694:753866..755138TCONS_00002064-exon-sc0000018-1575043694:753866..755138Clytia hemisphaericaexon
TCONS_00002064-exon-sc0000018-1491911889:755369..756023TCONS_00002064-exon-sc0000018-1491911889:755369..756023Clytia hemisphaericaexon
TCONS_00002064-exon-sc0000018-1510915933:755369..756023TCONS_00002064-exon-sc0000018-1510915933:755369..756023Clytia hemisphaericaexon
TCONS_00002064-exon-sc0000018-1575043694:755369..756023TCONS_00002064-exon-sc0000018-1575043694:755369..756023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:753866..756023 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.10435	0	0	0.0687259	0.928597	1.6653	0	0	0	0	3.03884	4.46716	0	0	0.0534753	0.193625	0.291572	0.440575	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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