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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001976 ID=TCONS_00001976|Name=TCONS_00001976|organism=Clytia hemisphaerica|type=transcript|length=2379bp
gaaaagaaaatgatttttgattgtttttattaacttcattttaagctttt
tggcGTAATCTACCAAAACTGTTGTCATGCGTTTCCCCTCcccaatcaaa
aaaaattcctatATAAAATTGGTAGAACTTGTATGAACAATCCACTGGGT
CGACAAGTTTCTCTTAGCGAATCACCTGTCGGCTTTTTTACCTTTGCGCA
TGCTCAATACAAAGACGGGGCAATGCTGAGATTTTTAAGCTTTCATAGAG
AAAGTGAATTTGTGTGGTCAGGCTATACAGGACAGGTGCTACATACACTT
TGATTATATGTATATAGTAATTTGTTGAGAAGAAGAACTGTCCATTTTAT
TATCCAAcattaaaaagagaagaaaacagCATACACACATAATAAAAGCA
AACAGACCAACATAAATGTCATTTGTTTATACATTGATCAGAATCCTGGT
TGTTGGTGCAAATAAGTATACACAACTGTTTGCTTAACATTAAACAGAAA
GAGAGTACTACTGgataaaagtatttttaaaaaacataaaTCTGTATTAA
AGAAAGTGTGTAGTGTATGTGTAGCACATGCTTTTTTGTGGATCGAGAAA
CAAATTGtgtgttttttatttaattggaaGCATTCATTCGTCTTGGTTGA
GCTGTTCCAATTGACACTACTGTAGTGAGAAGTTAGAAGATAAGAAAACT
GGCAATGTCGCACCTATTCACTGCTGACTCGCTTGGTCGAGATTTTTTAT
CCAAGAGCCTTGGTGGAATACCTTCATCCAGGATGCCGCCTTCTTTACTC
CACAACGGACCGACTCATGGCAATATTGGATCACAGgTATCAGGCATGTT
TGAAACAAATTTAGACGAATCACACCTCCTGGGTTCGCATTTAGACCCGA
TGAGTAAATATCTACCCAAACCAACTGGAGGTGTTAAAATGCCGACCGCG
TTTTTAAACAGTTTACACGCAGCCAATCCTGATCCCACACAATACGATCC
TCATGATATCCTCGATCAAATTTCGGCTTCTTTACAACCGAATGGCGCTT
CTGAAAATTCTTACGACCATGGTCCAACTTCAACAAACGCTACAAATTAT
TCAACATCACATTTGTTGTCACCTTCCTCGACCTCATTTTCGTCATCAAC
TTTCAGTAATGGTAATTTCTCTACCTTCAATAATACCTTTGCTGCAGCTG
CAGCCGCTGCGGCCGCAGCAGCCGCCCAAGTCGGTCAAGAGAGCGAATGT
ACGCCGCGTGAACTGGAATGGTTCGCCGAACGCTTCAAACAACGTCGTAT
CAAATTAGGCGTCACACAGGCGGATGTCGGTGGTGCACTGGCACATTTAA
AGTTACCAGGAGTTGGTAGTTTGAGTCAATCTACGATTTGTCGTTTCGAA
TCACTAACACTTAGCCATAATAACATGATGGCTTTAAAACCTGTTCTCTC
TGCCTGGTTAGATGAAGCAGAACGAGCAAACCGTATGAAAGCTAAAGACA
GTGCCTTTTTACCAAATGCTGATAAAAAACGCAAGCGTACGTCCATAGGG
GCTGCTGAAAAACGCTCTTTAGAGGCTTATTTTGCAATGCAGCCAAGACC
ATCAAGTGATAAGATTGCAGCCATTGCAGAGAAATTAGACTTGTCCAAAA
ATGTTGTACGTGTATGGTTTTGTAATCAAcgacaaaagaagaaaagaatg
aaGTTTTCAGttcattaaaattttgtttggtcgtgatgaaaaataaaaac
actgacGACATCTTTTTTGTAGATATATTTATGATCATCAACACACCTCG
TCCCATCTAAAATTAAAAGGGCTTGGGAGAAATAAGTAAATATGTTTGAT
TTGCCTCaagagtaaaaaaaagaaaatttgactaGGTTAGATATCATTTT
TACAGGGAGTTTTGTGTTCCTATCTTCTGACAGGTTTTTGCCCATTTTGA
AACCATATTTTGTGTGTGCATGTTTTTATAAATCTTCATCAAGTTCTACA
GTAACTTCTGGAGTCAtagttctttttcaaattttactacttctgtttat
tttattttattgtatttgtatttttattttgtccttgtatattttggctt
ttttatgccattttttgttttctttccttttttatttttcctttttttta
tcatttcttcTTAAATTAATGTATATAGTTtataaatattataaaataaa
atgccTTTTGTATTATTTTGCACATTTTCGAGGTTCCTAAATGACCTCCT
AAGTGACCtatgtattattattattgtttatTCGAATTTTGcgacaaaga
aaatttctttttttatttatgatgtTTTGTCAAAGAAATCGTACTTTTTG
ATGacaaaaagaaattacaaaagaaaaac Run BLAST on NCBI protein sequence of TCONS_00001976-protein >TCONS_00001976-protein ID=TCONS_00001976-protein|Name=TCONS_00001976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MSHLFTADSLGRDFLSKSLGGIPSSRMPPSLLHNGPTHGNIGSQVSGMFE
TNLDESHLLGSHLDPMSKYLPKPTGGVKMPTAFLNSLHAANPDPTQYDPH
DILDQISASLQPNGASENSYDHGPTSTNATNYSTSHLLSPSSTSFSSSTF
SNGNFSTFNNTFAAAAAAAAAAAAQVGQESECTPRELEWFAERFKQRRIK
LGVTQADVGGALAHLKLPGVGSLSQSTICRFESLTLSHNNMMALKPVLSA
WLDEAERANRMKAKDSAFLPNADKKRKRTSIGAAEKRSLEAYFAMQPRPS
SDKIAAIAEKLDLSKNVVRVWFCNQRQKKKRMKFSVH Run BLAST on NCBI transcript from alignment at sc0000012:1098370..1103875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001976 ID=TCONS_00001976|Name=TCONS_00001976|organism=Clytia hemisphaerica|type=transcript|length=5506bp|location=Sequence derived from alignment at sc0000012:1098370..1103875- (Clytia hemisphaerica)
GAAAAGAAAATGATTTTTGATTGTTTTTATTAACTTCATTTTAAGCTTTT
TGGCGTAATCTACCAAAACTGTTGTCATGCGTTTCCCCTCCCCAATCAAA
AAAAATTCCTATATAAAATTGGTAGAACTTGTATGAACAATCCACTGGGT
CGACAAGTTTCTCTTAGCGAATCACCTGTCGGCTTTTTTACCTTTGCGCA
TGCTCAATACAAAGACGGGGCAATGCTGAGATTTTTAAGCTTTCATAGAG
AAAGTGAATTTGTGTGGTCAGGCTATACAGGACAGGTGCTACATACACTT
TGATTATATGTATATAGTAATTTGTTGAGAAGAAGAACTGTCCATTTTAT
TATCCAACATTAAAAAGAGAAGAAAACAGCATACACACATAATAAAAGCA
AACAGACCAACATAAATGTCATTTGTTTATACATTGATCAGAATCCTGGT
TGTTGGTGCAAATAAGTATACACAACTGTTTGCTTAACATTAAACAGAAA
GAGAGTACTACTGGATAAAAGTATTTTTAAAAAACATAAATCTGTATTAA
AGAAAGTGTGTAGTGTATGTGTAGCACATGCTTTTTTGTGGATCGAGAAA
CAAATTGTGTGTTTTTTATTTAATTGGAAGCATTCATTCGTCTTGGTTGA
GCTGTTCCAATTGACACTACTGTAGTGAGAAGTTAGAAGATAAGAAAACT
GGCAATGTCGCACCTATTCACTGCTGACTCGCTTGGTCGAGATTTTTTAT
CCAAGAGCCTTGGTGGAATACCTTCATCCAGGATGCCGCCTTCTTTACTC
CACAACGGACCGACTCATGGCAATATTGGATCACAGGTATTCTTTCTTTG
GTTCTTGAAAATTTTCATTGAAAAATAATTTTAAAAATCGGTTATATGAA
GATTTATTTGACTTTTCTTGATTTTCCTTCAAAAATACACATCTTTTGTC
CTCTTCTAGTTTCTTATGTGCCTCTAACTAATTTTTTTTGCATTTAATTC
AGTCGAACTTTCTCAAATAGAGCTACTTTTCAGCCTCTAGAGAACAATGC
ACTATTCTTCTTTCACAATTTCTTACTGGGGACAACTTTGGGTATTCTGA
ACGACTGAGCGAAAACAAAAAAATGTGCAAAACACGGCAAAACACGATCA
TCTCTAAAGGCAGAATTCTAATATCAGCAGAGAGGATATATCTTTTTCTT
TCCATTTCTTCATTTTTTTGTAATTCCCTTTTCTTTCTTTTTTTGAAGAT
TACTATCACGTTGCGAAACCCTTGTTCACTAAGGCTACCCTTTTTTATAT
TTTCCTTATTCATCTCTAGTATGGTAAGAGTTGACCTAACATAACATGAT
AAAATGAAAATATCAATTTTTAATAGCCAAAACTTAGGTACATGTTTTTA
AAACGTGTGTTACAGACTTACAGATATAATACCGCCTACCACTACAGTAT
GAAGTACAACCATTGGTATGTAAAATATATGTACGTCAAGTCTATCTCGA
TGGCTCTTCTTTAACAATTTATCATTTTAATTGTTGACTTTAGTTATTAA
CAAGTTCTGGGGATAAACTTAAACCTATTTGTTTTATAACGTATACATAA
TGAATAAATTTAAAGGGACATTTTTTTCTCACGTTTCTATTTGTCTTTTA
AAAATAGGTGAGCTAATTAATTAAAAACTGAAACAAAACCAATAATTTTT
TTATCGCGTTTTCTTGACAAAATTTTATGTTTGTCATATCGATTTGGTGC
TGGTCTCGAGTTATTTCAAACTTTTAGTTATTTTTAATAGCCTCTCTTTC
ACACTTTGTTCTCGTAATTTTTTTAGGGAAAGAGAGCTTTTCACTTGCAT
ATGGCATAAGATTTTTTTCGTTTTGTTTTTGTCCGCATAATTGAGAAAAC
AATGGAGCTATAAGGGATGTAGAATGGAAAATTACAATGCAAATTTTCAC
AAAAAACACGTTGTTATAATAATTTTCTTGTCGAGGTTTAAAATTAAAGA
GAGTGAGAGAGGAGAAGAAGAAGAAGGCTCACTCACACAACATAAAAAAA
AGAGAGAAAAAATAAATAAAGAAAGAAAGAGGGGGAGAAAAAAAAGTGAA
GATAAAAGAAAAATTTGATCGCCTGGATCAGTTGAAAATAGTCAGGGAAG
AGTTCAGAAGGCTTCCATTTTTGGTTCCTTCGTTCTTATATCAAAAAAAG
AAGGAAATCTTTTATCGGGCGAATTTTTTCTTCTCAATTTTGCCCTTCTT
CGTTTTTTCGTACAATTTTGAAGATATTTTAATTTTCGTTTGGTATATGA
AGGAATTTTTTGCTCAAAACAAAAATGGATAAAATTGACAGCAAACAATT
CGTCAATAAACTTGTAAGTCCCTTTTTAGGACCTTTTTTTTGTGGTAGTA
TTTCATGGCTATACTTAAAAAAAAAATCAGAATTGGAGAGTTTAAAAAAA
ATGTTTTATAGTTTTGAAGAACGCTATGATAGATGCATTCAAATCATTCA
ATAAAATATGGTCACAAAACTCTTCCTTCATCAATTATTGATCCACTTCA
ATTGATTTGTTATGGACGCGAAAATGCCTGCTTTCAAATGGAAAAAAAAA
TCAATGATTCAATTTTGAATTGAAATTTTTTATAAAATATTCGTTATTCA
TCTGTTTTTATGCGAAATATATAGCGGCGATAGAAAAGTGATAATTTATG
TTAATTGCGTGTAATTAATTCTATTTCACGGCTTTATTCAGAAGAAGTGC
TGTTTTCAAATTTCAAGTGTTTGTTATGTTTGGGTGTGTAGAAAACGCCT
ACTTTTAATTNCGTTGTTATAATAATTTTCTTGTCGAGGTTTAAAATTAA
AGAGAGTGAGAGAGGAGAAGAAGAAGAAGGCTCACTCACACAACATAAAA
AAAAGAGAGAAAAAATAAATAAAGAAAGAAAGAGGGGGAGAAAAAAAAGT
GAAGATAAAAGAAAAATTTGATCGCCTGGATCAGTTGAAAATAGTCAGGG
AAGAGTTCAGAAGGCTTCCATTTTTGGTTCCTTCGTTCTTATATCAAAAA
AAGAAGGAAATCTTTTATCGGGCGAATTTTTTCTTCTCAATTTTGCCCTT
CTTCGTTTTTTCGTACAATTTTGAAGATATTTTAATTTTCGTTTGGTATA
TGAAGGAATTTTTTGCTCAAAACAAAAATGGATAAAATTGACAGCAAACA
ATTCGTCAATAAACTTGTAAGTCCCTTTTTAGGACCTTTTTTTTGTGGTA
GTATTTCATGGCTATACTTAAAAAAAAAATCAGAATTGGAGAGTTTAAAA
AAAATGTTTTATAGTTTTGAAGAACGCTATGATAGATGCATTCAAATCAT
TCAATAAAATATGGTCACAAAACTCTTCCTTCATCAATTATTGATCCACT
TCAATTGATTTGTTATGGACGCGAAAATGCCTGCTTTCAAATGGAAAAAA
AAATCAATGATTCAATTTTGAATTGACATTTTTTATAAAATATTCGTTAT
TCATCTGTTTTTATGCGAGATATATAGCGGCGATAGAAAAGTGATAATTT
ATGTTAATTGCGTGTAATTAATTCTATTTCACGGCTTTATTCAGAATAAG
TGCTGTTTTCAAATTTCAAGTGTTTGTTATGTTTGGGTGTGTAGAAAACG
CCTACTTTTAATTATTATCATGCAGAATTATAGCGGCTCTTAAAATGGCC
TTTGGCATATAGCTGTATATGAAAAATTTGAAGGGGTTGAAGGGACCAGC
TCTTATTGAAGCTAGTTTACATAAACATCGGAAAGATTCTTTTTTAAAGT
TAGTGTTTTGTGCTATTGTTTTCCGGGTATTATGATGTTTGGTCGTCTTC
CGATCGTGTAAATCGATGAATGAATCGATAATTTCAAAGGAGAACCGAAG
AGTCATTCCCTGGCCACTTTGACATCGACATTATGTAAATATCTTTTAAT
TTCTATTTTTCAGGTATCAGGCATGTTTGAAACAAATTTAGACGAATCAC
ACCTCCTGGGTTCGCATTTAGACCCGATGAGTAAATATCTACCCAAACCA
ACTGGAGGTGTTAAAATGCCGACCGCGTTTTTAAACAGTTTACACGCAGC
CAATCCTGATCCCACACAATACGATCCTCATGATATCCTCGATCAAATTT
CGGCTTCTTTACAACCGAATGGCGCTTCTGAAAATTCTTACGACCATGGT
CCAACTTCAACAAACGCTACAAATTATTCAACATCACATTTGTTGTCACC
TTCCTCGACCTCATTTTCGTCATCAACTTTCAGTAATGGTAATTTCTCTA
CCTTCAATAATACCTTTGCTGCAGCTGCAGCCGCTGCGGCCGCAGCAGCC
GCCCAAGTCGGTCAAGAGAGCGAATGTACGCCGCGTGAACTGGAATGGTT
CGCCGAACGCTTCAAACAACGTCGTATCAAATTAGGCGTCACACAGGCGG
ATGTCGGTGGTGCACTGGCACATTTAAAGTTACCAGGAGTTGGTAGTTTG
AGTCAATCTACGATTTGTCGTTTCGAATCACTAACACTTAGCCATAATAA
CATGATGGCTTTAAAACCTGTTCTCTCTGCCTGGTTAGATGAAGCAGAAC
GAGCAAACCGTATGAAAGCTAAAGACAGTGCCTTTTTACCAAATGCTGAT
AAAAAACGCAAGCGTACGTCCATAGGGGCTGCTGAAAAACGCTCTTTAGA
GGCTTATTTTGCAATGCAGCCAAGACCATCAAGTGATAAGATTGCAGCCA
TTGCAGAGAAATTAGACTTGTCCAAAAATGTTGTACGTGTATGGTTTTGT
AATCAACGACAAAAGAAGAAAAGAATGAAGTTTTCAGTTCATTAAAATTT
TGTTTGGTCGTGATGAAAAATAAAAACACTGACGACATCTTTTTTGTAGA
TATATTTATGATCATCAACACACCTCGTCCCATCTAAAATTAAAAGGGCT
TGGGAGAAATAAGTAAATATGTTTGATTTGCCTCAAGAGTAAAAAAAAGA
AAATTTGACTAGGTTAGATATCATTTTTACAGGGAGTTTTGTGTTCCTAT
CTTCTGACAGGTTTTTGCCCATTTTGAAACCATATTTTGTGTGTGCATGT
TTTTATAAATCTTCATCAAGTTCTACAGTAACTTCTGGAGTCATAGTTCT
TTTTCAAATTTTACTACTTCTGTTTATTTTATTTTATTGTATTTGTATTT
TTATTTTGTCCTTGTATATTTTGGCTTTTTTATGCCATTTTTTGTTTTCT
TTCCTTTTTTATTTTTCCTTTTTTTTATCATTTCTTCTTAAATTAATGTA
TATAGTTTATAAATATTATAAAATAAAATGCCTTTTGTATTATTTTGCAC
ATTTTCGAGGTTCCTAAATGACCTCCTAAGTGACCTATGTATTATTATTA
TTGTTTATTCGAATTTTGCGACAAAGAAAATTTCTTTTTTTATTTATGAT
GTTTTGTCAAAGAAATCGTACTTTTTGATGACAAAAAGAAATTACAAAAG
AAAAAC Coding sequence (CDS) from alignment at sc0000012:1098370..1103875- >TCONS_00001976 ID=TCONS_00001976|Name=TCONS_00001976|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at sc0000012:1098370..1103875- (Clytia hemisphaerica)
GTATCAGGCATGTTTGAAACAAATTTAGACGAATCACACCTCCTGGGTTC
GCATTTAGACCCGATGAGTAAATATCTACCCAAACCAACTGGAGGTGTTA
AAATGCCGACCGCGTTTTTAAACAGTTTACACGCAGCCAATCCTGATCCC
ACACAATACGATCCTCATGATATCCTCGATCAAATTTCGGCTTCTTTACA
ACCGAATGGCGCTTCTGAAAATTCTTACGACCATGGTCCAACTTCAACAA
ACGCTACAAATTATTCAACATCACATTTGTTGTCACCTTCCTCGACCTCA
TTTTCGTCATCAACTTTCAGTAATGGTAATTTCTCTACCTTCAATAATAC
CTTTGCTGCAGCTGCAGCCGCTGCGGCCGCAGCAGCCGCCCAAGTCGGTC
AAGAGAGCGAATGTACGCCGCGTGAACTGGAATGGTTCGCCGAACGCTTC
AAACAACGTCGTATCAAATTAGGCGTCACACAGGCGGATGTCGGTGGTGC
ACTGGCACATTTAAAGTTACCAGGAGTTGGTAGTTTGAGTCAATCTACGA
TTTGTCGTTTCGAATCACTAACACTTAGCCATAATAACATGATGGCTTTA
AAACCTGTTCTCTCTGCCTGGTTAGATGAAGCAGAACGAGCAAACCGTAT
GAAAGCTAAAGACAGTGCCTTTTTACCAAATGCTGATAAAAAACGCAAGC
GTACGTCCATAGGGGCTGCTGAAAAACGCTCTTTAGAGGCTTATTTTGCA
ATGCAGCCAAGACCATCAAGTGATAAGATTGCAGCCATTGCAGAGAAATT
AGACTTGTCCAAAAATGTTGTACGTGTATGGTTTTGTAATCAACGACAAA
AGAAGAAAAGAATGAAGTTTTCAGTTCATTAAATGTCGCACCTATTCACT
GCTGACTCGCTTGGTCGAGATTTTTTATCCAAGAGCCTTGGTGGAATACC
TTCATCCAGGATGCCGCCTTCTTTACTCCACAACGGACCGACTCATGGCA
ATATTGGATCACAGGTATCAGGCATGTTTGAAACAAATTTAGACGAATCA
CACCTCCTGGGTTCGCATTTAGACCCGATGAGTAAATATCTACCCAAACC
AACTGGAGGTGTTAAAATGCCGACCGCGTTTTTAAACAGTTTACACGCAG
CCAATCCTGATCCCACACAATACGATCCTCATGATATCCTCGATCAAATT
TCGGCTTCTTTACAACCGAATGGCGCTTCTGAAAATTCTTACGACCATGG
TCCAACTTCAACAAACGCTACAAATTATTCAACATCACATTTGTTGTCAC
CTTCCTCGACCTCATTTTCGTCATCAACTTTCAGTAATGGTAATTTCTCT
ACCTTCAATAATACCTTTGCTGCAGCTGCAGCCGCTGCGGCCGCAGCAGC
CGCCCAAGTCGGTCAAGAGAGCGAATGTACGCCGCGTGAACTGGAATGGT
TCGCCGAACGCTTCAAACAACGTCGTATCAAATTAGGCGTCACACAGGCG
GATGTCGGTGGTGCACTGGCACATTTAAAGTTACCAGGAGTTGGTAGTTT
GAGTCAATCTACGATTTGTCGTTTCGAATCACTAACACTTAGCCATAATA
ACATGATGGCTTTAAAACCTGTTCTCTCTGCCTGGTTAGATGAAGCAGAA
CGAGCAAACCGTATGAAAGCTAAAGACAGTGCCTTTTTACCAAATGCTGA
TAAAAAACGCAAGCGTACGTCCATAGGGGCTGCTGAAAAACGCTCTTTAG
AGGCTTATTTTGCAATGCAGCCAAGACCATCAAGTGATAAGATTGCAGCC
ATTGCAGAGAAATTAGACTTGTCCAAAAATGTTGTACGTGTATGGTTTTG
TAATCAACGACAAAAGAAGAAAAGAATGAAGTTTTCAGTTCATTAAATGT
CGCACCTATTCACTGCTGACTCGCTTGGTCGAGATTTTTTATCCAAGAGC
CTTGGTGGAATACCTTCATCCAGGATGCCGCCTTCTTTACTCCACAACGG
ACCGACTCATGGCAATATTGGATCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001976-exon-sc0000012-1575043694:1103040..1103875 | TCONS_00001976-exon-sc0000012-1575043694:1103040..1103875 | Clytia hemisphaerica | exon |
| TCONS_00001976-exon-sc0000012-1575043694:1098370..1099912 | TCONS_00001976-exon-sc0000012-1575043694:1098370..1099912 | Clytia hemisphaerica | exon |
| TCONS_00001976-exon-sc0000012-1510915933:1103040..1103875 | TCONS_00001976-exon-sc0000012-1510915933:1103040..1103875 | Clytia hemisphaerica | exon |
| TCONS_00001976-exon-sc0000012-1510915933:1098370..1099912 | TCONS_00001976-exon-sc0000012-1510915933:1098370..1099912 | Clytia hemisphaerica | exon |
| TCONS_00001976-exon-sc0000012-1491911889:1103040..1103875 | TCONS_00001976-exon-sc0000012-1491911889:1103040..1103875 | Clytia hemisphaerica | exon |
| TCONS_00001976-exon-sc0000012-1491911889:1098370..1099912 | TCONS_00001976-exon-sc0000012-1491911889:1098370..1099912 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:1098370..1103875 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00001976 vs. Swiss-Prot (Human)
Match: PO4F3 (POU domain, class 4, transcription factor 3 OS=Homo sapiens GN=POU4F3 PE=1 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 1.728e-77 Identity = 124/155 (80.00%), Postives = 135/155 (87.10%), Query Frame = 3
Query: 1245 ECTPRELEWFAERFKQRRIKLGVTQADVGGALAHLKLPGVGSLSQSTICRFESLTLSHNNMMALKPVLSAWLDEAERANRMKAKDSAFLPNADKKRKRTSIGAAEKRSLEAYFAMQPRPSSDKIAAIAEKLDLSKNVVRVWFCNQRQKKKRMKFS 1709
E PRELE FAERFKQRRIKLGVTQADVG ALA+LK+PGVGSLSQSTICRFESLTLSHNNM+ALKPVL AWL+EAE A R K +++KRKRTSI A EKRSLEAYFA+QPRPSS+KIAAIAEKLDL KNVVRVWFCNQRQK+KRMK+S
Sbjct: 181 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYS 335
The following BLAST results are available for this feature:
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