TCONS_00001976-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001976-protein
Unique NameTCONS_00001976-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001976-protein ID=TCONS_00001976-protein|Name=TCONS_00001976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MSHLFTADSLGRDFLSKSLGGIPSSRMPPSLLHNGPTHGNIGSQVSGMFE
TNLDESHLLGSHLDPMSKYLPKPTGGVKMPTAFLNSLHAANPDPTQYDPH
DILDQISASLQPNGASENSYDHGPTSTNATNYSTSHLLSPSSTSFSSSTF
SNGNFSTFNNTFAAAAAAAAAAAAQVGQESECTPRELEWFAERFKQRRIK
LGVTQADVGGALAHLKLPGVGSLSQSTICRFESLTLSHNNMMALKPVLSA
WLDEAERANRMKAKDSAFLPNADKKRKRTSIGAAEKRSLEAYFAMQPRPS
SDKIAAIAEKLDLSKNVVRVWFCNQRQKKKRMKFSVH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001017XLOC_001017Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001976TCONS_00001976Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013847POU
IPR001356Homeobox_dom
IPR000327POU_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
IPR010982Lambda_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013847POU domainPRINTSPR00028POUDOMAINcoord: 198..215
score: 71.53
coord: 308..323
score: 70.31
coord: 240..255
score: 59.18
coord: 273..293
score: 47.72
coord: 224..237
score: 78.72
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 274..336
e-value: 1.7E-18
score: 77.5
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 275..331
e-value: 3.8E-17
score: 61.7
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 272..332
score: 16.795
IPR000327POU-specific domainSMARTSM00352poucoord: 179..256
e-value: 5.6E-48
score: 175.4
IPR000327POU-specific domainPFAMPF00157Poucoord: 185..256
e-value: 2.0E-28
score: 98.1
IPR000327POU-specific domainPROSITEPS00035POU_1coord: 197..209
IPR000327POU-specific domainPROSITEPS00465POU_2coord: 224..237
IPR000327POU-specific domainPROSITEPS51179POU_3coord: 179..256
score: 45.65
NoneNo IPR availableGENE3D1.10.260.40coord: 182..265
e-value: 8.3E-31
score: 105.5
NoneNo IPR availableGENE3D1.10.10.60coord: 274..333
e-value: 2.5E-17
score: 62.0
NoneNo IPR availableCDDcd00086homeodomaincoord: 275..333
e-value: 3.38561E-16
score: 70.7352
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 307..330
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 270..332
IPR010982Lambda repressor-like, DNA-binding domainSUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 181..256

Blast
[Close]
BLAST of TCONS_00001976-protein vs. Swiss-Prot (Human)
Match: PO4F3 (POU domain, class 4, transcription factor 3 OS=Homo sapiens GN=POU4F3 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.546e-84
Identity = 124/155 (80.00%), Postives = 135/155 (87.10%), Query Frame = 0 
Query:  181 ECTPRELEWFAERFKQRRIKLGVTQADVGGALAHLKLPGVGSLSQSTICRFESLTLSHNNMMALKPVLSAWLDEAERANRMKAKDSAFLPNADKKRKRTSIGAAEKRSLEAYFAMQPRPSSDKIAAIAEKLDLSKNVVRVWFCNQRQKKKRMKFS 335
            E  PRELE FAERFKQRRIKLGVTQADVG ALA+LK+PGVGSLSQSTICRFESLTLSHNNM+ALKPVL AWL+EAE A R K         +++KRKRTSI A EKRSLEAYFA+QPRPSS+KIAAIAEKLDL KNVVRVWFCNQRQK+KRMK+S
Sbjct:  181 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYS 335
The following BLAST results are available for this feature:
BLAST of TCONS_00001976-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PO4F31.546e-8480.00POU domain, class 4, transcription factor 3 OS=Hom... [more]
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