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TCONS_00001976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001976
Unique NameTCONS_00001976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001976 ID=TCONS_00001976|Name=TCONS_00001976|organism=Clytia hemisphaerica|type=transcript|length=2379bp
gaaaagaaaatgatttttgattgtttttattaacttcattttaagctttt
tggcGTAATCTACCAAAACTGTTGTCATGCGTTTCCCCTCcccaatcaaa
aaaaattcctatATAAAATTGGTAGAACTTGTATGAACAATCCACTGGGT
CGACAAGTTTCTCTTAGCGAATCACCTGTCGGCTTTTTTACCTTTGCGCA
TGCTCAATACAAAGACGGGGCAATGCTGAGATTTTTAAGCTTTCATAGAG
AAAGTGAATTTGTGTGGTCAGGCTATACAGGACAGGTGCTACATACACTT
TGATTATATGTATATAGTAATTTGTTGAGAAGAAGAACTGTCCATTTTAT
TATCCAAcattaaaaagagaagaaaacagCATACACACATAATAAAAGCA
AACAGACCAACATAAATGTCATTTGTTTATACATTGATCAGAATCCTGGT
TGTTGGTGCAAATAAGTATACACAACTGTTTGCTTAACATTAAACAGAAA
GAGAGTACTACTGgataaaagtatttttaaaaaacataaaTCTGTATTAA
AGAAAGTGTGTAGTGTATGTGTAGCACATGCTTTTTTGTGGATCGAGAAA
CAAATTGtgtgttttttatttaattggaaGCATTCATTCGTCTTGGTTGA
GCTGTTCCAATTGACACTACTGTAGTGAGAAGTTAGAAGATAAGAAAACT
GGCAATGTCGCACCTATTCACTGCTGACTCGCTTGGTCGAGATTTTTTAT
CCAAGAGCCTTGGTGGAATACCTTCATCCAGGATGCCGCCTTCTTTACTC
CACAACGGACCGACTCATGGCAATATTGGATCACAGgTATCAGGCATGTT
TGAAACAAATTTAGACGAATCACACCTCCTGGGTTCGCATTTAGACCCGA
TGAGTAAATATCTACCCAAACCAACTGGAGGTGTTAAAATGCCGACCGCG
TTTTTAAACAGTTTACACGCAGCCAATCCTGATCCCACACAATACGATCC
TCATGATATCCTCGATCAAATTTCGGCTTCTTTACAACCGAATGGCGCTT
CTGAAAATTCTTACGACCATGGTCCAACTTCAACAAACGCTACAAATTAT
TCAACATCACATTTGTTGTCACCTTCCTCGACCTCATTTTCGTCATCAAC
TTTCAGTAATGGTAATTTCTCTACCTTCAATAATACCTTTGCTGCAGCTG
CAGCCGCTGCGGCCGCAGCAGCCGCCCAAGTCGGTCAAGAGAGCGAATGT
ACGCCGCGTGAACTGGAATGGTTCGCCGAACGCTTCAAACAACGTCGTAT
CAAATTAGGCGTCACACAGGCGGATGTCGGTGGTGCACTGGCACATTTAA
AGTTACCAGGAGTTGGTAGTTTGAGTCAATCTACGATTTGTCGTTTCGAA
TCACTAACACTTAGCCATAATAACATGATGGCTTTAAAACCTGTTCTCTC
TGCCTGGTTAGATGAAGCAGAACGAGCAAACCGTATGAAAGCTAAAGACA
GTGCCTTTTTACCAAATGCTGATAAAAAACGCAAGCGTACGTCCATAGGG
GCTGCTGAAAAACGCTCTTTAGAGGCTTATTTTGCAATGCAGCCAAGACC
ATCAAGTGATAAGATTGCAGCCATTGCAGAGAAATTAGACTTGTCCAAAA
ATGTTGTACGTGTATGGTTTTGTAATCAAcgacaaaagaagaaaagaatg
aaGTTTTCAGttcattaaaattttgtttggtcgtgatgaaaaataaaaac
actgacGACATCTTTTTTGTAGATATATTTATGATCATCAACACACCTCG
TCCCATCTAAAATTAAAAGGGCTTGGGAGAAATAAGTAAATATGTTTGAT
TTGCCTCaagagtaaaaaaaagaaaatttgactaGGTTAGATATCATTTT
TACAGGGAGTTTTGTGTTCCTATCTTCTGACAGGTTTTTGCCCATTTTGA
AACCATATTTTGTGTGTGCATGTTTTTATAAATCTTCATCAAGTTCTACA
GTAACTTCTGGAGTCAtagttctttttcaaattttactacttctgtttat
tttattttattgtatttgtatttttattttgtccttgtatattttggctt
ttttatgccattttttgttttctttccttttttatttttcctttttttta
tcatttcttcTTAAATTAATGTATATAGTTtataaatattataaaataaa
atgccTTTTGTATTATTTTGCACATTTTCGAGGTTCCTAAATGACCTCCT
AAGTGACCtatgtattattattattgtttatTCGAATTTTGcgacaaaga
aaatttctttttttatttatgatgtTTTGTCAAAGAAATCGTACTTTTTG
ATGacaaaaagaaattacaaaagaaaaac
Run BLAST on NCBI

protein sequence of TCONS_00001976-protein

>TCONS_00001976-protein ID=TCONS_00001976-protein|Name=TCONS_00001976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MSHLFTADSLGRDFLSKSLGGIPSSRMPPSLLHNGPTHGNIGSQVSGMFE
TNLDESHLLGSHLDPMSKYLPKPTGGVKMPTAFLNSLHAANPDPTQYDPH
DILDQISASLQPNGASENSYDHGPTSTNATNYSTSHLLSPSSTSFSSSTF
SNGNFSTFNNTFAAAAAAAAAAAAQVGQESECTPRELEWFAERFKQRRIK
LGVTQADVGGALAHLKLPGVGSLSQSTICRFESLTLSHNNMMALKPVLSA
WLDEAERANRMKAKDSAFLPNADKKRKRTSIGAAEKRSLEAYFAMQPRPS
SDKIAAIAEKLDLSKNVVRVWFCNQRQKKKRMKFSVH
Run BLAST on NCBI

transcript from alignment at sc0000012:1098370..1103875-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001976 ID=TCONS_00001976|Name=TCONS_00001976|organism=Clytia hemisphaerica|type=transcript|length=5506bp|location=Sequence derived from alignment at sc0000012:1098370..1103875- (Clytia hemisphaerica)
GAAAAGAAAATGATTTTTGATTGTTTTTATTAACTTCATTTTAAGCTTTT TGGCGTAATCTACCAAAACTGTTGTCATGCGTTTCCCCTCCCCAATCAAA AAAAATTCCTATATAAAATTGGTAGAACTTGTATGAACAATCCACTGGGT CGACAAGTTTCTCTTAGCGAATCACCTGTCGGCTTTTTTACCTTTGCGCA TGCTCAATACAAAGACGGGGCAATGCTGAGATTTTTAAGCTTTCATAGAG AAAGTGAATTTGTGTGGTCAGGCTATACAGGACAGGTGCTACATACACTT TGATTATATGTATATAGTAATTTGTTGAGAAGAAGAACTGTCCATTTTAT TATCCAACATTAAAAAGAGAAGAAAACAGCATACACACATAATAAAAGCA AACAGACCAACATAAATGTCATTTGTTTATACATTGATCAGAATCCTGGT TGTTGGTGCAAATAAGTATACACAACTGTTTGCTTAACATTAAACAGAAA GAGAGTACTACTGGATAAAAGTATTTTTAAAAAACATAAATCTGTATTAA AGAAAGTGTGTAGTGTATGTGTAGCACATGCTTTTTTGTGGATCGAGAAA CAAATTGTGTGTTTTTTATTTAATTGGAAGCATTCATTCGTCTTGGTTGA GCTGTTCCAATTGACACTACTGTAGTGAGAAGTTAGAAGATAAGAAAACT GGCAATGTCGCACCTATTCACTGCTGACTCGCTTGGTCGAGATTTTTTAT CCAAGAGCCTTGGTGGAATACCTTCATCCAGGATGCCGCCTTCTTTACTC CACAACGGACCGACTCATGGCAATATTGGATCACAGGTATTCTTTCTTTG GTTCTTGAAAATTTTCATTGAAAAATAATTTTAAAAATCGGTTATATGAA GATTTATTTGACTTTTCTTGATTTTCCTTCAAAAATACACATCTTTTGTC CTCTTCTAGTTTCTTATGTGCCTCTAACTAATTTTTTTTGCATTTAATTC AGTCGAACTTTCTCAAATAGAGCTACTTTTCAGCCTCTAGAGAACAATGC ACTATTCTTCTTTCACAATTTCTTACTGGGGACAACTTTGGGTATTCTGA ACGACTGAGCGAAAACAAAAAAATGTGCAAAACACGGCAAAACACGATCA TCTCTAAAGGCAGAATTCTAATATCAGCAGAGAGGATATATCTTTTTCTT TCCATTTCTTCATTTTTTTGTAATTCCCTTTTCTTTCTTTTTTTGAAGAT TACTATCACGTTGCGAAACCCTTGTTCACTAAGGCTACCCTTTTTTATAT TTTCCTTATTCATCTCTAGTATGGTAAGAGTTGACCTAACATAACATGAT AAAATGAAAATATCAATTTTTAATAGCCAAAACTTAGGTACATGTTTTTA AAACGTGTGTTACAGACTTACAGATATAATACCGCCTACCACTACAGTAT GAAGTACAACCATTGGTATGTAAAATATATGTACGTCAAGTCTATCTCGA TGGCTCTTCTTTAACAATTTATCATTTTAATTGTTGACTTTAGTTATTAA CAAGTTCTGGGGATAAACTTAAACCTATTTGTTTTATAACGTATACATAA TGAATAAATTTAAAGGGACATTTTTTTCTCACGTTTCTATTTGTCTTTTA AAAATAGGTGAGCTAATTAATTAAAAACTGAAACAAAACCAATAATTTTT TTATCGCGTTTTCTTGACAAAATTTTATGTTTGTCATATCGATTTGGTGC TGGTCTCGAGTTATTTCAAACTTTTAGTTATTTTTAATAGCCTCTCTTTC ACACTTTGTTCTCGTAATTTTTTTAGGGAAAGAGAGCTTTTCACTTGCAT ATGGCATAAGATTTTTTTCGTTTTGTTTTTGTCCGCATAATTGAGAAAAC AATGGAGCTATAAGGGATGTAGAATGGAAAATTACAATGCAAATTTTCAC AAAAAACACGTTGTTATAATAATTTTCTTGTCGAGGTTTAAAATTAAAGA GAGTGAGAGAGGAGAAGAAGAAGAAGGCTCACTCACACAACATAAAAAAA AGAGAGAAAAAATAAATAAAGAAAGAAAGAGGGGGAGAAAAAAAAGTGAA GATAAAAGAAAAATTTGATCGCCTGGATCAGTTGAAAATAGTCAGGGAAG AGTTCAGAAGGCTTCCATTTTTGGTTCCTTCGTTCTTATATCAAAAAAAG AAGGAAATCTTTTATCGGGCGAATTTTTTCTTCTCAATTTTGCCCTTCTT CGTTTTTTCGTACAATTTTGAAGATATTTTAATTTTCGTTTGGTATATGA AGGAATTTTTTGCTCAAAACAAAAATGGATAAAATTGACAGCAAACAATT CGTCAATAAACTTGTAAGTCCCTTTTTAGGACCTTTTTTTTGTGGTAGTA TTTCATGGCTATACTTAAAAAAAAAATCAGAATTGGAGAGTTTAAAAAAA ATGTTTTATAGTTTTGAAGAACGCTATGATAGATGCATTCAAATCATTCA ATAAAATATGGTCACAAAACTCTTCCTTCATCAATTATTGATCCACTTCA ATTGATTTGTTATGGACGCGAAAATGCCTGCTTTCAAATGGAAAAAAAAA TCAATGATTCAATTTTGAATTGAAATTTTTTATAAAATATTCGTTATTCA TCTGTTTTTATGCGAAATATATAGCGGCGATAGAAAAGTGATAATTTATG TTAATTGCGTGTAATTAATTCTATTTCACGGCTTTATTCAGAAGAAGTGC TGTTTTCAAATTTCAAGTGTTTGTTATGTTTGGGTGTGTAGAAAACGCCT ACTTTTAATTNCGTTGTTATAATAATTTTCTTGTCGAGGTTTAAAATTAA AGAGAGTGAGAGAGGAGAAGAAGAAGAAGGCTCACTCACACAACATAAAA AAAAGAGAGAAAAAATAAATAAAGAAAGAAAGAGGGGGAGAAAAAAAAGT GAAGATAAAAGAAAAATTTGATCGCCTGGATCAGTTGAAAATAGTCAGGG AAGAGTTCAGAAGGCTTCCATTTTTGGTTCCTTCGTTCTTATATCAAAAA AAGAAGGAAATCTTTTATCGGGCGAATTTTTTCTTCTCAATTTTGCCCTT CTTCGTTTTTTCGTACAATTTTGAAGATATTTTAATTTTCGTTTGGTATA TGAAGGAATTTTTTGCTCAAAACAAAAATGGATAAAATTGACAGCAAACA ATTCGTCAATAAACTTGTAAGTCCCTTTTTAGGACCTTTTTTTTGTGGTA GTATTTCATGGCTATACTTAAAAAAAAAATCAGAATTGGAGAGTTTAAAA AAAATGTTTTATAGTTTTGAAGAACGCTATGATAGATGCATTCAAATCAT TCAATAAAATATGGTCACAAAACTCTTCCTTCATCAATTATTGATCCACT TCAATTGATTTGTTATGGACGCGAAAATGCCTGCTTTCAAATGGAAAAAA AAATCAATGATTCAATTTTGAATTGACATTTTTTATAAAATATTCGTTAT TCATCTGTTTTTATGCGAGATATATAGCGGCGATAGAAAAGTGATAATTT ATGTTAATTGCGTGTAATTAATTCTATTTCACGGCTTTATTCAGAATAAG TGCTGTTTTCAAATTTCAAGTGTTTGTTATGTTTGGGTGTGTAGAAAACG CCTACTTTTAATTATTATCATGCAGAATTATAGCGGCTCTTAAAATGGCC TTTGGCATATAGCTGTATATGAAAAATTTGAAGGGGTTGAAGGGACCAGC TCTTATTGAAGCTAGTTTACATAAACATCGGAAAGATTCTTTTTTAAAGT TAGTGTTTTGTGCTATTGTTTTCCGGGTATTATGATGTTTGGTCGTCTTC CGATCGTGTAAATCGATGAATGAATCGATAATTTCAAAGGAGAACCGAAG AGTCATTCCCTGGCCACTTTGACATCGACATTATGTAAATATCTTTTAAT TTCTATTTTTCAGGTATCAGGCATGTTTGAAACAAATTTAGACGAATCAC ACCTCCTGGGTTCGCATTTAGACCCGATGAGTAAATATCTACCCAAACCA ACTGGAGGTGTTAAAATGCCGACCGCGTTTTTAAACAGTTTACACGCAGC CAATCCTGATCCCACACAATACGATCCTCATGATATCCTCGATCAAATTT CGGCTTCTTTACAACCGAATGGCGCTTCTGAAAATTCTTACGACCATGGT CCAACTTCAACAAACGCTACAAATTATTCAACATCACATTTGTTGTCACC TTCCTCGACCTCATTTTCGTCATCAACTTTCAGTAATGGTAATTTCTCTA CCTTCAATAATACCTTTGCTGCAGCTGCAGCCGCTGCGGCCGCAGCAGCC GCCCAAGTCGGTCAAGAGAGCGAATGTACGCCGCGTGAACTGGAATGGTT CGCCGAACGCTTCAAACAACGTCGTATCAAATTAGGCGTCACACAGGCGG ATGTCGGTGGTGCACTGGCACATTTAAAGTTACCAGGAGTTGGTAGTTTG AGTCAATCTACGATTTGTCGTTTCGAATCACTAACACTTAGCCATAATAA CATGATGGCTTTAAAACCTGTTCTCTCTGCCTGGTTAGATGAAGCAGAAC GAGCAAACCGTATGAAAGCTAAAGACAGTGCCTTTTTACCAAATGCTGAT AAAAAACGCAAGCGTACGTCCATAGGGGCTGCTGAAAAACGCTCTTTAGA GGCTTATTTTGCAATGCAGCCAAGACCATCAAGTGATAAGATTGCAGCCA TTGCAGAGAAATTAGACTTGTCCAAAAATGTTGTACGTGTATGGTTTTGT AATCAACGACAAAAGAAGAAAAGAATGAAGTTTTCAGTTCATTAAAATTT TGTTTGGTCGTGATGAAAAATAAAAACACTGACGACATCTTTTTTGTAGA TATATTTATGATCATCAACACACCTCGTCCCATCTAAAATTAAAAGGGCT TGGGAGAAATAAGTAAATATGTTTGATTTGCCTCAAGAGTAAAAAAAAGA AAATTTGACTAGGTTAGATATCATTTTTACAGGGAGTTTTGTGTTCCTAT CTTCTGACAGGTTTTTGCCCATTTTGAAACCATATTTTGTGTGTGCATGT TTTTATAAATCTTCATCAAGTTCTACAGTAACTTCTGGAGTCATAGTTCT TTTTCAAATTTTACTACTTCTGTTTATTTTATTTTATTGTATTTGTATTT TTATTTTGTCCTTGTATATTTTGGCTTTTTTATGCCATTTTTTGTTTTCT TTCCTTTTTTATTTTTCCTTTTTTTTATCATTTCTTCTTAAATTAATGTA TATAGTTTATAAATATTATAAAATAAAATGCCTTTTGTATTATTTTGCAC ATTTTCGAGGTTCCTAAATGACCTCCTAAGTGACCTATGTATTATTATTA TTGTTTATTCGAATTTTGCGACAAAGAAAATTTCTTTTTTTATTTATGAT GTTTTGTCAAAGAAATCGTACTTTTTGATGACAAAAAGAAATTACAAAAG AAAAAC

Coding sequence (CDS) from alignment at sc0000012:1098370..1103875-

>TCONS_00001976 ID=TCONS_00001976|Name=TCONS_00001976|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at sc0000012:1098370..1103875- (Clytia hemisphaerica)
GTATCAGGCATGTTTGAAACAAATTTAGACGAATCACACCTCCTGGGTTC
GCATTTAGACCCGATGAGTAAATATCTACCCAAACCAACTGGAGGTGTTA
AAATGCCGACCGCGTTTTTAAACAGTTTACACGCAGCCAATCCTGATCCC
ACACAATACGATCCTCATGATATCCTCGATCAAATTTCGGCTTCTTTACA
ACCGAATGGCGCTTCTGAAAATTCTTACGACCATGGTCCAACTTCAACAA
ACGCTACAAATTATTCAACATCACATTTGTTGTCACCTTCCTCGACCTCA
TTTTCGTCATCAACTTTCAGTAATGGTAATTTCTCTACCTTCAATAATAC
CTTTGCTGCAGCTGCAGCCGCTGCGGCCGCAGCAGCCGCCCAAGTCGGTC
AAGAGAGCGAATGTACGCCGCGTGAACTGGAATGGTTCGCCGAACGCTTC
AAACAACGTCGTATCAAATTAGGCGTCACACAGGCGGATGTCGGTGGTGC
ACTGGCACATTTAAAGTTACCAGGAGTTGGTAGTTTGAGTCAATCTACGA
TTTGTCGTTTCGAATCACTAACACTTAGCCATAATAACATGATGGCTTTA
AAACCTGTTCTCTCTGCCTGGTTAGATGAAGCAGAACGAGCAAACCGTAT
GAAAGCTAAAGACAGTGCCTTTTTACCAAATGCTGATAAAAAACGCAAGC
GTACGTCCATAGGGGCTGCTGAAAAACGCTCTTTAGAGGCTTATTTTGCA
ATGCAGCCAAGACCATCAAGTGATAAGATTGCAGCCATTGCAGAGAAATT
AGACTTGTCCAAAAATGTTGTACGTGTATGGTTTTGTAATCAACGACAAA
AGAAGAAAAGAATGAAGTTTTCAGTTCATTAAATGTCGCACCTATTCACT
GCTGACTCGCTTGGTCGAGATTTTTTATCCAAGAGCCTTGGTGGAATACC
TTCATCCAGGATGCCGCCTTCTTTACTCCACAACGGACCGACTCATGGCA
ATATTGGATCACAGGTATCAGGCATGTTTGAAACAAATTTAGACGAATCA
CACCTCCTGGGTTCGCATTTAGACCCGATGAGTAAATATCTACCCAAACC
AACTGGAGGTGTTAAAATGCCGACCGCGTTTTTAAACAGTTTACACGCAG
CCAATCCTGATCCCACACAATACGATCCTCATGATATCCTCGATCAAATT
TCGGCTTCTTTACAACCGAATGGCGCTTCTGAAAATTCTTACGACCATGG
TCCAACTTCAACAAACGCTACAAATTATTCAACATCACATTTGTTGTCAC
CTTCCTCGACCTCATTTTCGTCATCAACTTTCAGTAATGGTAATTTCTCT
ACCTTCAATAATACCTTTGCTGCAGCTGCAGCCGCTGCGGCCGCAGCAGC
CGCCCAAGTCGGTCAAGAGAGCGAATGTACGCCGCGTGAACTGGAATGGT
TCGCCGAACGCTTCAAACAACGTCGTATCAAATTAGGCGTCACACAGGCG
GATGTCGGTGGTGCACTGGCACATTTAAAGTTACCAGGAGTTGGTAGTTT
GAGTCAATCTACGATTTGTCGTTTCGAATCACTAACACTTAGCCATAATA
ACATGATGGCTTTAAAACCTGTTCTCTCTGCCTGGTTAGATGAAGCAGAA
CGAGCAAACCGTATGAAAGCTAAAGACAGTGCCTTTTTACCAAATGCTGA
TAAAAAACGCAAGCGTACGTCCATAGGGGCTGCTGAAAAACGCTCTTTAG
AGGCTTATTTTGCAATGCAGCCAAGACCATCAAGTGATAAGATTGCAGCC
ATTGCAGAGAAATTAGACTTGTCCAAAAATGTTGTACGTGTATGGTTTTG
TAATCAACGACAAAAGAAGAAAAGAATGAAGTTTTCAGTTCATTAAATGT
CGCACCTATTCACTGCTGACTCGCTTGGTCGAGATTTTTTATCCAAGAGC
CTTGGTGGAATACCTTCATCCAGGATGCCGCCTTCTTTACTCCACAACGG
ACCGACTCATGGCAATATTGGATCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001017XLOC_001017Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001976-proteinTCONS_00001976-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001976-exon-sc0000012-1575043694:1103040..1103875TCONS_00001976-exon-sc0000012-1575043694:1103040..1103875Clytia hemisphaericaexon
TCONS_00001976-exon-sc0000012-1575043694:1098370..1099912TCONS_00001976-exon-sc0000012-1575043694:1098370..1099912Clytia hemisphaericaexon
TCONS_00001976-exon-sc0000012-1510915933:1103040..1103875TCONS_00001976-exon-sc0000012-1510915933:1103040..1103875Clytia hemisphaericaexon
TCONS_00001976-exon-sc0000012-1510915933:1098370..1099912TCONS_00001976-exon-sc0000012-1510915933:1098370..1099912Clytia hemisphaericaexon
TCONS_00001976-exon-sc0000012-1491911889:1103040..1103875TCONS_00001976-exon-sc0000012-1491911889:1103040..1103875Clytia hemisphaericaexon
TCONS_00001976-exon-sc0000012-1491911889:1098370..1099912TCONS_00001976-exon-sc0000012-1491911889:1098370..1099912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:1098370..1103875 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.376031 0.20812 0.0649996 0.063592 2.54635 2.0358 3.61343 3.80547 4.95755 3.57335 3.16811 3.31536 19.7795 17.821 13.2053 16.6932 8.77171 8.34603 7.13043 7.99581 14.5172 15.6767 4.82662 6.49345 5.32778 7.25868 2.3149 1.1178 0.127435 0.221859
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013847POU
IPR001356Homeobox_dom
IPR000327POU_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
IPR010982Lambda_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
BLAST of TCONS_00001976 vs. Swiss-Prot (Human)
Match: PO4F3 (POU domain, class 4, transcription factor 3 OS=Homo sapiens GN=POU4F3 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.728e-77
Identity = 124/155 (80.00%), Postives = 135/155 (87.10%), Query Frame = 3
Query: 1245 ECTPRELEWFAERFKQRRIKLGVTQADVGGALAHLKLPGVGSLSQSTICRFESLTLSHNNMMALKPVLSAWLDEAERANRMKAKDSAFLPNADKKRKRTSIGAAEKRSLEAYFAMQPRPSSDKIAAIAEKLDLSKNVVRVWFCNQRQKKKRMKFS 1709
            E  PRELE FAERFKQRRIKLGVTQADVG ALA+LK+PGVGSLSQSTICRFESLTLSHNNM+ALKPVL AWL+EAE A R K         +++KRKRTSI A EKRSLEAYFA+QPRPSS+KIAAIAEKLDL KNVVRVWFCNQRQK+KRMK+S
Sbjct:  181 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYS 335          
The following BLAST results are available for this feature:
BLAST of TCONS_00001976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PO4F31.728e-7780.00POU domain, class 4, transcription factor 3 OS=Hom... [more]
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