TCONS_00001960 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001960
Unique Name	TCONS_00001960
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2625

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000012:854506..857130-

transcript sequence

>TCONS_00001960 ID=TCONS_00001960|Name=TCONS_00001960|organism=Clytia hemisphaerica|type=transcript|length=2625bp
CGCCCTTCAGTTCCTTTTATACATACACAATTCTAATATACTTATTTCAA
GGTTCTAAATTATTTCTATCAAGCCAATTTATAATTCTGaataaaaagtc
caaaaatgtaATTTATAGACGGAGACTCCGTTTTATTGATAgagcaaaaa
cattttgtttatttgtaAACGACTCAGTTAGTACTTCTGTCTACAAAATG
TTCAAGAGAGACCAACACTTTAGATTTTTTCCCTTCATTTAGCAGCGAAT
ACTTAAACTTAATCTTCAAATTCAACATTGAGATTCAAATAATGAAGTAA
TGACGAAATAGGGAAGGGACTTGAATTAAAAAACGTACTTTATTTCATGA
TCcagtttgttgtttttctccttCTTTCTTGTTTACCCTAACTAAGTTTA
CTCAACTTATTTAGGATCTCATAGTAGGAAAACTTAGATATTGAGCGAGG
GCAATCATCAATCATTACAACACAAAAGAGACCAAATTTAGTGGGAACTC
ATCACTCAGGAAAACAAAACTTGTGTGATTTAAATAGagctaaacaaata
ttttaggtTTATATTACCCTTGCCTTTCAACTTATAGACCCTTAAACATG
AATGTTAAAAataacttctttttttctttctaggtTATTGCTGGTGTCAT
TATTAGGTAAAAGGAGTACTGAAGAGTCGTGACAGATTTTACTACAGAAA
TGTTAGACAACGTGGACGGCAACTTTACATTCCCTCATGACATGACATGT
GAAGAGATGTTCCCAGACTTTACACCAGACGTATTTGATTATTTCTGCTC
CGTTACAACAGACACTACTCAAACACAAAACGATACAACATTGGAATTTT
TCGAACAAGTTTGTTGTGTTGATCGCACGCCAGTTTCGGTTCAGGACGAT
AGCTCTATGCGTAAAACGCTATACATGATTTGTCATTCACAGAATTTGAC
AGTGGATGTTGAAAATAACATTTGTAGAGAATTTGAACCATATTACATGC
CCCCGGAACCGTTTACGATAACACCAGCAACGTATGTAATAATGTCACTT
CTGACACCGATTGGTTTAATGGCAAACTTATTGATTATAATGACAGTGTT
GCGAGCTAAGAAACTCAGAACAACTACTGGGTTCTTCATTTGTCACCTCG
CCATCGCCGATCTGTTATGTATCTTATCTATGATGGCATACGTGATAGCC
CATTCACAAATTGAActgaaacaaaattttaatattttgatgatATTCTC
ATCATTAGATGTTTTTATCGGTTCAGCTTCATTGCTACACGTGACAGCTG
CTAGTGTGGAAAGAGCCATAGCTGTTGCAAAACCCATGGTGTACCCGTTG
ATATTGTGCAAAGAACGAGCCAAGAAGGTGATTCTACTTATATGGGTTTA
TTGCATCGTTTTATTTATCGCTTGTGTTGCTAGAGTATTCGTCAAACCAA
TTATCTACAATTCAATCATATTTTACATAGCAGTTTGTTTAAGCTTCGGT
GTACCGTGCATATTGGTATTAATTTCTTATCTGAACATCTCAATCAGAGC
CTTACGGAATTTACAGATGGAGAAAAGAATTGAACGATCATTAATTATTG
TTTCCATGCTGAATGATACTCAAAGGAGAGCGCCGAGATATCATCATCAG
ATACGCGAATTAAAGCTAGCTNGCTTGTGTTGCTAGAGTATTCGTTAAAC
CAATTATCTACAATTCAATCATATTTTACATAGCAGTTTGTTTAAGCTTC
GGTGTACCGTGCATATTGGTATTAATTTCTTATCTGAACATCTCAATCAG
AGCCTTACGGAATTTACAGATGGAGAAAAGAATTGAACGATCATTAATTA
TTGTTTCCATGCTGAATGATACTCAAAGGAGAGCGCCGAGATATCATCAT
CAGATACGCGAATTAAAGCTGGCTCTCAATTTGACCATTATGACAGCACC
GTTTGTTTTCGGTTGGGGATATTTCATGATCTGTAATGTTTATGAGGAAG
TAACAAAGACTACATTGGATGGATTAAAAAATTGGTTCCTCAACATGTTA
CCTTATCTTATCTCATGTTTAAACCCAATCACATATCTACTATTCACAAA
GACTTTACGAAAGGAAGCTATTAAATTGGTACTGAAACCATTCAGTAAGT
TCCGCTCACTACACCATCGACGCTTCTCATCGACATCGCTCATTTTTACC
TCACGTAATAGTAGCAGACACTCAGACTCGTCCGACGCTCGTATGATGCA
AAGGGAGGTCTAAGCTTAAGCTAGATCCCATCATAACGATTAAGCTTTTG
ACTACTAAAGCTTTATCCGATGGTAGGAGGGATTGTATTGAGTGTATTGA
CAAAAGAAGAAGCAACAGGTCATAGCAGGGACACTAATTAAGTagataat
aaaaacaattataattcTTGTAAACATTCAGAAGTAATGGAACAAACACA
TTAAAACGgaattaaaaatgacaaataTTTCAAATCCAAAGGGACGTAAA
TTTGAAATAGGAACACGAACCAAAATTTagaatgtaaaatattttttttc
aacgtATATAAAAAGATTTAGAGCAATATAGCTACGGGAGATGTAAATAG
aaaacatgtttaaaacgaCCATTTA

Run BLAST on NCBI

transcript from alignment at sc0000012:854506..857130-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001960 ID=TCONS_00001960|Name=TCONS_00001960|organism=Clytia hemisphaerica|type=transcript|length=2625bp|location=Sequence derived from alignment at sc0000012:854506..857130- (Clytia hemisphaerica)
CGCCCTTCAGTTCCTTTTATACATACACAATTCTAATATACTTATTTCAA
GGTTCTAAATTATTTCTATCAAGCCAATTTATAATTCTGAATAAAAAGTC
CAAAAATGTAATTTATAGACGGAGACTCCGTTTTATTGATAGAGCAAAAA
CATTTTGTTTATTTGTAAACGACTCAGTTAGTACTTCTGTCTACAAAATG
TTCAAGAGAGACCAACACTTTAGATTTTTTCCCTTCATTTAGCAGCGAAT
ACTTAAACTTAATCTTCAAATTCAACATTGAGATTCAAATAATGAAGTAA
TGACGAAATAGGGAAGGGACTTGAATTAAAAAACGTACTTTATTTCATGA
TCCAGTTTGTTGTTTTTCTCCTTCTTTCTTGTTTACCCTAACTAAGTTTA
CTCAACTTATTTAGGATCTCATAGTAGGAAAACTTAGATATTGAGCGAGG
GCAATCATCAATCATTACAACACAAAAGAGACCAAATTTAGTGGGAACTC
ATCACTCAGGAAAACAAAACTTGTGTGATTTAAATAGAGCTAAACAAATA
TTTTAGGTTTATATTACCCTTGCCTTTCAACTTATAGACCCTTAAACATG
AATGTTAAAAATAACTTCTTTTTTTCTTTCTAGGTTATTGCTGGTGTCAT
TATTAGGTAAAAGGAGTACTGAAGAGTCGTGACAGATTTTACTACAGAAA
TGTTAGACAACGTGGACGGCAACTTTACATTCCCTCATGACATGACATGT
GAAGAGATGTTCCCAGACTTTACACCAGACGTATTTGATTATTTCTGCTC
CGTTACAACAGACACTACTCAAACACAAAACGATACAACATTGGAATTTT
TCGAACAAGTTTGTTGTGTTGATCGCACGCCAGTTTCGGTTCAGGACGAT
AGCTCTATGCGTAAAACGCTATACATGATTTGTCATTCACAGAATTTGAC
AGTGGATGTTGAAAATAACATTTGTAGAGAATTTGAACCATATTACATGC
CCCCGGAACCGTTTACGATAACACCAGCAACGTATGTAATAATGTCACTT
CTGACACCGATTGGTTTAATGGCAAACTTATTGATTATAATGACAGTGTT
GCGAGCTAAGAAACTCAGAACAACTACTGGGTTCTTCATTTGTCACCTCG
CCATCGCCGATCTGTTATGTATCTTATCTATGATGGCATACGTGATAGCC
CATTCACAAATTGAACTGAAACAAAATTTTAATATTTTGATGATATTCTC
ATCATTAGATGTTTTTATCGGTTCAGCTTCATTGCTACACGTGACAGCTG
CTAGTGTGGAAAGAGCCATAGCTGTTGCAAAACCCATGGTGTACCCGTTG
ATATTGTGCAAAGAACGAGCCAAGAAGGTGATTCTACTTATATGGGTTTA
TTGCATCGTTTTATTTATCGCTTGTGTTGCTAGAGTATTCGTCAAACCAA
TTATCTACAATTCAATCATATTTTACATAGCAGTTTGTTTAAGCTTCGGT
GTACCGTGCATATTGGTATTAATTTCTTATCTGAACATCTCAATCAGAGC
CTTACGGAATTTACAGATGGAGAAAAGAATTGAACGATCATTAATTATTG
TTTCCATGCTGAATGATACTCAAAGGAGAGCGCCGAGATATCATCATCAG
ATACGCGAATTAAAGCTAGCTNGCTTGTGTTGCTAGAGTATTCGTTAAAC
CAATTATCTACAATTCAATCATATTTTACATAGCAGTTTGTTTAAGCTTC
GGTGTACCGTGCATATTGGTATTAATTTCTTATCTGAACATCTCAATCAG
AGCCTTACGGAATTTACAGATGGAGAAAAGAATTGAACGATCATTAATTA
TTGTTTCCATGCTGAATGATACTCAAAGGAGAGCGCCGAGATATCATCAT
CAGATACGCGAATTAAAGCTGGCTCTCAATTTGACCATTATGACAGCACC
GTTTGTTTTCGGTTGGGGATATTTCATGATCTGTAATGTTTATGAGGAAG
TAACAAAGACTACATTGGATGGATTAAAAAATTGGTTCCTCAACATGTTA
CCTTATCTTATCTCATGTTTAAACCCAATCACATATCTACTATTCACAAA
GACTTTACGAAAGGAAGCTATTAAATTGGTACTGAAACCATTCAGTAAGT
TCCGCTCACTACACCATCGACGCTTCTCATCGACATCGCTCATTTTTACC
TCACGTAATAGTAGCAGACACTCAGACTCGTCCGACGCTCGTATGATGCA
AAGGGAGGTCTAAGCTTAAGCTAGATCCCATCATAACGATTAAGCTTTTG
ACTACTAAAGCTTTATCCGATGGTAGGAGGGATTGTATTGAGTGTATTGA
CAAAAGAAGAAGCAACAGGTCATAGCAGGGACACTAATTAAGTAGATAAT
AAAAACAATTATAATTCTTGTAAACATTCAGAAGTAATGGAACAAACACA
TTAAAACGGAATTAAAAATGACAAATATTTCAAATCCAAAGGGACGTAAA
TTTGAAATAGGAACACGAACCAAAATTTAGAATGTAAAATATTTTTTTTC
AACGTATATAAAAAGATTTAGAGCAATATAGCTACGGGAGATGTAAATAG
AAAACATGTTTAAAACGACCATTTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001010	XLOC_001010	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001960-exon-sc0000012-1575043694:854506..857130	TCONS_00001960-exon-sc0000012-1575043694:854506..857130	Clytia hemisphaerica	exon
TCONS_00001960-exon-sc0000012-1510915933:854506..857130	TCONS_00001960-exon-sc0000012-1510915933:854506..857130	Clytia hemisphaerica	exon
TCONS_00001960-exon-sc0000012-1491911889:854506..857130	TCONS_00001960-exon-sc0000012-1491911889:854506..857130	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000012	supercontig	sc0000012:854506..857130 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.263942	0.39469	0.447084	0.293447	0.408891	0.239797	0.104788	1.3029	0.899644	0.665574	0.694551	0.14475	0	0	0.277466	0	0.0993846	0.0471954	0.016837	0	0	0	0	0	0	0.0166057

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001960 vs. Swiss-Prot (Human)

BLAST of TCONS_00001960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00001960 (transcript) - C. hemisphaerica