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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001943 ID=TCONS_00001943|Name=TCONS_00001943|organism=Clytia hemisphaerica|type=transcript|length=2480bpRun BLAST on NCBI protein sequence of TCONS_00001943-protein >TCONS_00001943-protein ID=TCONS_00001943-protein|Name=TCONS_00001943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=656bp MTVFPSMGGRDVEDRNFLTFTMPSNMQLEDKGEFSTWCERMIFIFEDLKWRun BLAST on NCBI transcript from alignment at sc0000012:581544..589069- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001943 ID=TCONS_00001943|Name=TCONS_00001943|organism=Clytia hemisphaerica|type=transcript|length=7526bp|location=Sequence derived from alignment at sc0000012:581544..589069- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000012:581544..589069- >TCONS_00001943 ID=TCONS_00001943|Name=TCONS_00001943|organism=Clytia hemisphaerica|type=CDS|length=25623bp|location=Sequence derived from alignment at sc0000012:581544..589069- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001943 vs. Swiss-Prot (Human)
Match: ASCC2 (Activating signal cointegrator 1 complex subunit 2 OS=Homo sapiens GN=ASCC2 PE=1 SV=3) HSP 1 Score: 146.747 bits (369), Expect = 3.090e-36 Identity = 105/380 (27.63%), Postives = 182/380 (47.89%), Query Frame = 3
Query: 96 PSMGGRDVEDRNFLTFTMPSNMQLEDKGEFSTWCERMIFIFEDLKWLLALPVNEFWNQVLHDTTLTSSLESFLQNSPRFYD--LKNIPETCKTALGRVSKLYLLVIQRMSLHDEDQNQPMPTEVFGDMIYENYIFDAAKLIDICAIFQRPNNDEMQTLLGTIMENVFACQPNYYNDLSSAFESIIVTISN------------------MEERLQPPKGGKPVNGREAVDMLMFLYDMTCSLSAFLNVFPKASSLLFRTDLISRLATIYETMVPMLMKLIEINQKKFKYVCACV-------QKELLQIVTFSIKNGFVARTKDLSKDENEEKTASYISIMDSLSQYKRFFARYCMTSNVSEDLEQIKKL-DVIDISNLQYL 1151
P++ DR F+ + P + E + ER F+ DL WLLALP ++FW QV+ D TL L+S+L+ PR +D + + PE R+ + L RMS H E ++ + FG+++Y N++FD K++D+C +F + N+ +Q ++G N+F QP+YY+DL +I+ SN +EER + P+ E D++++L D +L AFL++FP A + D RLA+ YE +P + I+ + + + + +K+L++I + + + S D + ++ I SL Q KRF Y V+ED+ +++ V+D + Y+
Sbjct: 25 PALHPEQKADRYFVLYKPPPKDNIPALVE--EYLERATFVANDLDWLLALPHDKFWCQVIFDETLQKCLDSYLRYVPRKFDEGVASAPEVVDMQ-KRLHRSVFLTFLRMSTHKESKDHFISPSAFGEILYNNFLFDIPKILDLCVLFGKGNSPLLQKMIG----NIFTQQPSYYSDLDETLPTILQVFSNILQHCGLQGDGANTTPQKLEERGRLTPSDMPL--LELKDIVLYLCDTCTTLWAFLDIFPLACQTFQKHDFCYRLASFYEAAIPEMESAIKKRRLEDSKLLGDLWQRLSHSRKKLMEIFHIILNQICLLPILESSCDNIQGFIEEFLQIFSSLLQEKRFLRDYDALFPVAEDISLLQQASSVLDETRTAYI 395 The following BLAST results are available for this feature:
BLAST of TCONS_00001943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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