TCONS_00001943-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001943-protein
Unique Name	TCONS_00001943-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	656

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001943-protein ID=TCONS_00001943-protein|Name=TCONS_00001943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=656bp
MTVFPSMGGRDVEDRNFLTFTMPSNMQLEDKGEFSTWCERMIFIFEDLKW
LLALPVNEFWNQVLHDTTLTSSLESFLQNSPRFYDLKNIPETCKTALGRV
SKLYLLVIQRMSLHDEDQNQPMPTEVFGDMIYENYIFDAAKLIDICAIFQ
RPNNDEMQTLLGTIMENVFACQPNYYNDLSSAFESIIVTISNMEERLQPP
KGGKPVNGREAVDMLMFLYDMTCSLSAFLNVFPKASSLLFRTDLISRLAT
IYETMVPMLMKLIEINQKKFKYVCACVQKELLQIVTFSIKNGFVARTKDL
SKDENEEKTASYISIMDSLSQYKRFFARYCMTSNVSEDLEQIKKLDVIDI
SNLQYLSNMAGVVVHETDTDDTLKQLRELLPNKSEEFIRNCMSQYGSNVE
VILNNVMEGNIVDETLQKPVKKKPQKLIPDKEFLEDNKEHVERVKLSFYN
QSEEGNDYDDYGANYVNYDNVYDDEYDDTYDSQDVGAADTDNVDELYKRK
FTVPRVLQQMNRKSRRGEQEDDEEESEESDEEGSENDNEDGGEQQQQQQQ
QQQNQYKGNNNRRGEWKGGEVSNNRGGGARGGRGGQGGNKRGGGRGGNKG
NKQQNNDKSQGGQKEGSNPSQRGGQRGGRGGRGGRGRGGKRNHRALADKK
MSKGMF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001005	XLOC_001005	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001943	TCONS_00001943	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003892	CUE
IPR015943	WD40/YVTN_repeat-like_dom
IPR009060	UBA-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 507..527
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 509..656
IPR003892	Ubiquitin system component Cue	SMART	SM00546	cue_7	coord: 368..410 e-value: 0.0029 score: 26.8
IPR003892	Ubiquitin system component Cue	PFAM	PF02845	CUE	coord: 370..409 e-value: 8.4E-5 score: 22.1
IPR003892	Ubiquitin system component Cue	PROSITE	PS51140	CUE	coord: 368..411 score: 12.272
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 74..622 e-value: 1.2E-6 score: 26.7
IPR009060	UBA-like	SUPERFAMILY	46934	UBA-like	coord: 367..413

Blast

[Close]

BLAST of TCONS_00001943-protein vs. Swiss-Prot (Human)
Match: ASCC2 (Activating signal cointegrator 1 complex subunit 2 OS=Homo sapiens GN=ASCC2 PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 1.385e-39
Identity = 105/380 (27.63%), Postives = 182/380 (47.89%), Query Frame = 0

Query:    5 PSMGGRDVEDRNFLTFTMPSNMQLEDKGEFSTWCERMIFIFEDLKWLLALPVNEFWNQVLHDTTLTSSLESFLQNSPRFYD--LKNIPETCKTALGRVSKLYLLVIQRMSLHDEDQNQPMPTEVFGDMIYENYIFDAAKLIDICAIFQRPNNDEMQTLLGTIMENVFACQPNYYNDLSSAFESIIVTISN------------------MEERLQPPKGGKPVNGREAVDMLMFLYDMTCSLSAFLNVFPKASSLLFRTDLISRLATIYETMVPMLMKLIEINQKKFKYVCACV-------QKELLQIVTFSIKNGFVARTKDLSKDENEEKTASYISIMDSLSQYKRFFARYCMTSNVSEDLEQIKKL-DVIDISNLQYL 356
            P++      DR F+ +  P    +    E   + ER  F+  DL WLLALP ++FW QV+ D TL   L+S+L+  PR +D  + + PE       R+ +   L   RMS H E ++  +    FG+++Y N++FD  K++D+C +F + N+  +Q ++G    N+F  QP+YY+DL     +I+   SN                  +EER +      P+   E  D++++L D   +L AFL++FP A     + D   RLA+ YE  +P +   I+  + +   +   +       +K+L++I    +    +    + S D  +     ++ I  SL Q KRF   Y     V+ED+  +++   V+D +   Y+
Sbjct:   25 PALHPEQKADRYFVLYKPPPKDNIPALVE--EYLERATFVANDLDWLLALPHDKFWCQVIFDETLQKCLDSYLRYVPRKFDEGVASAPEVVDMQ-KRLHRSVFLTFLRMSTHKESKDHFISPSAFGEILYNNFLFDIPKILDLCVLFGKGNSPLLQKMIG----NIFTQQPSYYSDLDETLPTILQVFSNILQHCGLQGDGANTTPQKLEERGRLTPSDMPL--LELKDIVLYLCDTCTTLWAFLDIFPLACQTFQKHDFCYRLASFYEAAIPEMESAIKKRRLEDSKLLGDLWQRLSHSRKKLMEIFHIILNQICLLPILESSCDNIQGFIEEFLQIFSSLLQEKRFLRDYDALFPVAEDISLLQQASSVLDETRTAYI 395

The following BLAST results are available for this feature:

BLAST of TCONS_00001943-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001943-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASCC2	1.385e-39	27.63	Activating signal cointegrator 1 complex subunit 2...	[more]

You are here

TCONS_00001943-protein (polypeptide) - C. hemisphaerica