TCONS_00001849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001849
Unique NameTCONS_00001849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001849 ID=TCONS_00001849|Name=TCONS_00001849|organism=Clytia hemisphaerica|type=transcript|length=1436bp
GCGGGAGAGATACGACTTGAGTTGGCTATTATGAAAATTCTCACAAACAT
TTTTAACTATTCACTTACTCGCCTAGTCTTCAAATGCAGGGGATTGGCAC
TTCTGTAGGAAGAAGAAATTATAAAATTCAACACACATCTCACACCATCA
TCATTATCACCAACAAAAGCATCACCAATGAGAATTATGATGCATAATCA
ACCGTGTCATCAATTTTACAGTGTAGATGGTATCTTATCCGCAATGTCCC
CTTCACACCAGCAACGGCACTGTGAGCAATCGGTAGTATCGGGCGGCGGT
GGACAGCCAATGCCACCACCttcacattcaccagcaccatacTGGCATGC
TGGGAGTCATTATGGAGCAGAACACAGCGCAATAACCCATGGCTATCCTC
CACCATACGCACGCCGAGGTCATCGAAGGAATCGAACCACATTCACACGA
CAACAACTCGAAGAACTCGAAAAATTATTCGATAGCACGCATTATCCCGA
TGTTTTCGCGAGAGAAGAGTTAGCATCAAGGATCAGTTTAACAGAGGCTA
GAGTACAGGTATGGTTCCAAAATCGTCGTGCAAAGTTTCGTAAAACAAGC
GAGAAAAACAAACGGAAATCGAATTCTACGTCATCATCTtcatcaaccaa
tcaaaatacagATCTTTCATCAACAGCCAATCAAATGGCAACTACAAACA
ATAACAACAATAGTACtataaataataacaataatggtgAAACAGTGATC
GATAAACAATCGAATGAAGTCGATGAACAAATTCGATTGAAAAACGATTC
AATCGAATCAACAGAAAAACAAATTCTCGATCATAACACACGATTACCTG
AAGACATAAACAATAAATATAACTCGACTGCTCCCCGGCTGACACACCCA
CCGTACACCTTTCATACTTATCAAGGCACGTACTGTCCTTCATCATATGG
CTCTATGGAGCCGCGCGTCGTAAATGGAGTCTCATACCCTGTATCTGTTG
AAGGTGTCAAGGGTGAAAGCTATGGCCGTAACACTCTAGTAAATAATGGT
GATTTAGACTGGCGGGCTTAGGAGCTACTAAAAATGCTTATATTTCTAGT
TTTTTTGCTATGTAAAtatcttaaaaagaaaattttatgaagaCGTGATA
TAACATAGAAAGCATTATTTCCTATTTATATCTTTATTAtggtttttgaa
aactttaatcGACACTTTAAATTGTTGAGGGTGTACCGtaaaattttgta
tattttagATGTATGTTTTAGAGGGATCATTTTTATCGGTTTTTATTATA
TTCCAAGTTAtctttttaccaaaaatataTACTATTTGATTTTTAGAACG
TGTTGAGtaaaatttttatatgattGATTAATAATTTCTTGATATTCATA
ATGTAATCTTTAATTGACAAATCGTTTCAAAATATA
Run BLAST on NCBI

protein sequence of TCONS_00001849-protein

>TCONS_00001849-protein ID=TCONS_00001849-protein|Name=TCONS_00001849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MRIMMHNQPCHQFYSVDGILSAMSPSHQQRHCEQSVVSGGGGQPMPPPSH
SPAPYWHAGSHYGAEHSAITHGYPPPYARRGHRRNRTTFTRQQLEELEKL
FDSTHYPDVFAREELASRISLTEARVQVWFQNRRAKFRKTSEKNKRKSNS
TSSSSSTNQNTDLSSTANQMATTNNNNNSTINNNNNGETVIDKQSNEVDE
QIRLKNDSIESTEKQILDHNTRLPEDINNKYNSTAPRLTHPPYTFHTYQG
TYCPSSYGSMEPRVVNGVSYPVSVEGVKGESYGRNTLVNNGDLDWRA
Run BLAST on NCBI

transcript from alignment at sc0000012:939944..947157+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001849 ID=TCONS_00001849|Name=TCONS_00001849|organism=Clytia hemisphaerica|type=transcript|length=7214bp|location=Sequence derived from alignment at sc0000012:939944..947157+ (Clytia hemisphaerica)
GCGGGAGAGATACGACTTGAGTTGGCTATTATGAAAATTCTCACAAACAT TTTTAACTATTCACTTACTCGCCTAGTCTTCAAATGCAGGGGATTGGCAC TTCTGTAGGAAGGTATTGCGatactttgtttttgtttgtttttgtatttg cTTTCACCTATGCTTTCACTAATGTTTACTGACACTAAACCAATCAGAGC GTGCTCTTCAATTGGCATCCATGTTTCAGAGAAATCAACTTAAAAGGGGC CTTTAAGTTCAACTTTTGGGTTTAAAGAATTAAATTAAACCGTAGAGata taattttttgtcaatttatttCCATTTGTGCACAAGAAAAAACTGGGTGT GTCACTGTTGAATGTAGTTGCTAAAAAGCCTAAAGTTTGCCAGCTGGCTT TGCCTTTCTTGAGACTAAGTTAAAATCAGGTTGGAATGATACAGGGGGGG GTTTTCTATTTCGAGATGAGAGCTATTTAgttgtgaaaaagaaaagggTA TAAAGAAACACAAGCTTACTGAATCAAGATTTGCTTTCAAGTGCAGTTCT TATTCCTTAAGCACACTTTCTAtgaaatttaaaggatttttaaAGTTGTG GTAATAAGTagaagatttaaaaattttctttattttcaattttttttttt actttgctttttattgtatttttattgCTCTTTTTTTCGTGCTCTGTTTC TCTTTGTTTGTATTGAATAACATCTTCACGCTATTGTTTGAAATAAAAGC CTCCATTCAATAGATTGGATTTAGTATTTAAGAGCACGGCGTGTGTCTGT AGTTTGAATTGtatctttttttgatttcattttaagTTCTTCATGACGAT TTTAAAGTCATACTTGATTgtgtttaattttgaaatttttactttgTGAT TAATTTGTATGAAATCAAGTTAGAAgaatttcatttgaaatgataatttt ttcataTATTCAAGATATCGAACCGTATCGAACTATGTAGtatgtaaagt ttttaaatgtttttttttagtcAAGAGACGAAGGGACTGGTTGCGCTAGG CGCATCCCAGGTTTAGCTTAAATTCCGATAtgatttgcataaaaaattgA TTGCCAAATTAAAATCGAGATATAATGTTGAAGGTCCGAATTCTttcaaa tgatttttcaaacatGCCTCCTTAGGCATCACGTTGTGTGAGAGTGTAAT TTGATTGTGAGCCACTGTCTCGAACGGTAGGAGAattaagccatctttta tccCTGGTGTCTGAGAGATGAATAGAACACGCAGAGAGACTTTGCAACTG TATTTTGTAGTGTAGTGTAAGGAATGAAATTAATTTCAGCAAGTGAGGTA TTTAGCTCAGTATGTGTTGTTGGACTAAATATAGTTTGAATTAAAGAACA AAAGGGCGAAATGCATCCATGTTAGTGATTAATGAAGAAATTGTTAAATT AAGACTGTGAATTATTCAATATTAAATTCAATTTCACCAAGATATACTTT CCTACCCTGAGTATTAGAAGCTTAGaagttaagttttcaaagaatatatt aacctctgaagtccaataatgacattttttagttgtgttttcaacgacgg gaaaaaatcaactttgaacctcatccaagatcttggatggtcgtcatggt tacttttctctgtgttgattgcgcgctgaatagaatctcgattggtcggc acaggccAATATATGATATttgcctgtgcttttcacgatAATACTTTCCA ACATTTAGACAGACGTTTGTGTTTTAATGAAATAGCATGGTGAAATTATA CCTGAAAATTTCTTTAACATCCAAACTTAATactttaaaatttctaaatt gaaCCATTACTCAAAGAACCTATTGATGAAACTTTTCATTACATATGATT CCCTTTTCAGAAGAAATTATAAAATTCAACACACATCTCACACCATCATC ATTATCACCAACAAAAGCATCACCAATGAGAATTATGATGCATAATCAAC CGTGTCATCAATTTTACAGTGTAGATGGTATCTTATCCGCAATGTCCCCT TCACACCAGCAACGGCACTGTGAGCAATCGGTAGTATCGGGCGGCGGTGG ACAGCCAATGCCACCACCttcacattcaccagcaccatacTGGCATGCTG GGAGTCATTATGGTAAGATATTGTTTACGTTTTAACtatacacacccctg tctcacagcccctgtggagcttttttcttcagtggggatagCAATTCCTA TTCAACCAAACGGGGACAGAGGATagaaatagacgatatcggcttaacga aattctccccgaatgattacccatgatgcattgcgcaaaaaaattcagta agtcaatattgtccgtgaattttttttgcgcaatgcatcatgggtaatca ttcggggagaattcggaaagccgatatcgtctattatattgttccaaggt taaaaaatcaagttgggATGATTTTGTagtacaattttcaaacattgaat tttgaatggatatgaaatcaaagtcaatttctcagtgaagctgaaattca agggtattttccaaCTGGGGACGAAtttttcgccaaattaaattttccag tggggcttgggtcccagcgggtctgcgAAACAGGGGTGTTTATAGTCTTT AATGGTTTACATCTTTAAGGGTTTAATTGTAATAACTATAAAATTGCTAG TAAAATTTTGAACTTGATCTTTTTCGAATGAGATCGAAGTTGATCGCTTT CACTACTTACTCGACAGAGAACGAGGCCCTTACAGTATTTTAACATGATG GTCATACTTGGCAAAGTTATCAGGGTTTCTTTCATGAGTAGTCACGGTAA accttgaaaatcaaattagtcAAGTTTAATTTTTGCTAattaaaaagggt tgaaaagaTCATTACGAGTGGATATTTTAGatacaaacaaataaaaactt ttaagaCTGCTTTAGAATAATTCAATATGAAGTATTTTTTTACAATCTTC AATAATGTCTTCTTGGCTTATATGCGAGGagtaatgtttttcaaaaaaaa tgattcCGTTGAAAAAGTAACAGTATATAAGCCTGCCCCAAAGAATGTTT ATTCAATGTAACAATGTAATCAGTGACTTGATGAAAAAAAACTATAATTT AATTTCAGTTGAATATAACTTTTCATGgtttcgaaattttgaattaataC TCGTTGGAAGGATAATCGCGTGCTAAATATTCTAGAATAAAAATGCTGAA GCAGAACTAAGTTTTGAAAGCTATCTAATCATTACGTGAGTTAAAATGAG TTATGGATAAAATTTATAACTTATTGACCAGGAAATGAACCGACTTTTGC TGATTTACTGTTTATAAAAGGTATAAAGGTTTGATGGCGAACTGTATCCG TACTAATGTAATTTTCtaccaaattttaaaattaaaaggcaatattaaaa tttgatatataaTTCTATGATTTTTGTTCTGTAGTTTAAAAGTTATAATG ATTTGAAAGTCGAAAAAGGAAgccattttttagtatttttccacactgaa agttttttgagatactaatgttttcaaatccaatgttttcttattttttg ccattttatCTTCGTCAACTCAAATCAGCTTGGATCATAAATTAAGTAAC GTAAAAGTAGTGAGAACACAAATTTTTCTGTGAAGGATTGCGATATTTTG ATACCATTTTTAACGTATGCTTggactttttttaaagttaacTTCGAatt cttataacttttgaacaactgatccaaattcaaaaagttataaaccaaat tttaagtttgtgTTTCATATAATCACGGTTCTTATTTAGGTCTGGCGAAC GGCGAATTTCGCCGGTCAAACACGAAGTCCAAAAATTTAGTTTGCCGCAT CATTAACATTTATGCTAATCAATACACTTggcttgctaagaattcgccgG CCTAGAATTTAGATCTCGCTGGAgctaatttttcattcgccacCCTATTA AAAACAAAGCAAAGCCCCTGTAAAATTATGAATACGGCTGGCAATTGAAC CCGTAAACTATCGCGGACCGCTCGGTAGAATATCTCAATTACGATTAGCC TTCAGCAATGAAACGCATTAACGTAATCTCGATGAATTAGATTACCCCAA TATTATTTGAGACGCGCCTTGACAGGCATTGATGTTAGCGTTTTTACAAG GAATTACTTTTTCATCTAGAATTTGAGCTTGTTGGATATACAGACTAATA CactatttataaacaaaaaatgctgATAATGCTcttcgaagttttttttg aggCATGAGCATAAGGCTTGAGAATGACGAACTCATACTGTGCCTAGTGG CGCCGCCTCGCCAATGACGTCAGAATCTCATTTTCAATATACTGAAAGAA TGTTGTAAAAGAAAAGTTTGTCATCGCATGTCTTTATATCCAGTGAACTT GTTGTTGATGAATAAGTTGTTCTCATGTGACGCGATTAAACTACGAGACG ATAATTGGTTCAGCTCGAATCTTTAAACCAGATTAGGTTGGTTGACCGCA CATTTTCGTCAAGTCAATTTCAGTAATTTCAAAAACCTTGCCCCCAGATT TGTCATTATTAGTTAGTAACATTTTATATTGCATtccttatttaaaaatt tttgtttcgttattaattttcttttgtgCTTTTGTGTGAACGATGACAAT AAAAATCAGGGACATTGACACATacttaaaaatctttctttattgaaaag atacaGTAATGGAATTGGCTATAAAGAGAGTCGAATACAAATTTAAACAG TTTAAATATTTCAAGACAAGGAACACAGCTCTCTAATTTTCGTACAATCA CGTAGCTtacaacaatttttttaattggtaAATCGAATCAAGTTGTTAAA AAAGTGCCTGTTAAATTAGAAGACGGAAGAAAATCCTTAATTGAAGGCAA TCAAATTTAGAGGTTTAAAATTTATACGAAACACACGTTGATTAATTGGC AGCAAAGGACAAAAAATGGAATATATAAATTATACAGCAGAGCATCTTTG GCCGCCACAATATTATTTAGGTAATAGATATTGACAAGTTTCAGAGTTTT GTCATTTGCTGGTTAATGACATAGATCCGATGTTGAGATAAGATCCTTTA TAAGGAATAGAGCGACAATATGTCTTATGTATTTTTGCGGTAGCGCGCTT TGCAATGTTATCAGGTGAAAAATACGTATACACACATTCTTAATGACAGA TATGATGTTGTACAGTGACCTTTTTTGATAGTAACGAAATTCGTAAAAAA AGGGAACCGAGACGGGAGGGTGAGATAAACATCTCTGTGAACTGGTATTT GCGGTAGAAATGTTCTCAGCAAGACTGAGTCAATATTTGGTGATTTACCG GTCACGTTTCTCACGTTTTGCACAGATCCTTTTTTAACGCCGCGATTTAA CGTTAGAAATACGTCATATTGACATTTCATAACCAACAAGATAATTTCGG GAAAGTTATCAAATTAGCCCGAAATTCTATTTTGACAATCGAAGTCTTAA CATTCTGTTCTAGTTCTGTCGGATTTTTTTATTGATACCAAAGTCTATTT ACAAAAGATTCAATTTTCCAGGAGCAGAACACAGCGCAATAACCCATGGC TATCCTCCACCATACGCACGCCGAGGTCATCGAAGGAATCGAACCACATT CACACGACAACAACTCGAAGAACTCGAAAAATTATTCGATAGCACGCATT ATCCCGATGTTTTCGCGAGAGAAGAGTTAGCATCAAGGATCAGTTTAACA GAGGCTAGAGTACAGGTAAGTTCTCATTtttaacctttaaaaaaatgcag TGCTCAAAACTAGCTTTTATTCTTTGAACGAAATTcataaaataaatttg acaagattcttaaaatgtttctttagCAAAATTGAATACTGAATATTGAC CAAGCAAATATCCTTAAGTATCTAAAGGCAAGCAAGTCTGCTTAAACATC TTTTGAAGACGGTTTGAATCTCCTTATAACTTTACTCATAGTTTACCGGT CATAATTGAATACCCACCTAATATTCccgcaattttcatattctgTTGCG CTCGATTCTTCCTGTTCTTAACAATCTTGTTGTTCCCAAAAAAGGGAAAT GAGTTTTTCTCGTTAGTACGACGTTAGTACGAAATTTTTGCATGACAAAG AAGGGTATTTTATAAGTAAAAACGATTCATAGAATAACTGAACGCATTCG AATAACAATCGAAATACTCAAATATTAGCTATAATTTTTTCCTTCGtcta ttttttcactttttatgtGTCCTTGTTTTTCCATAGGTATGGTTCCAAAA TCGTCGTGCAAAGTTTCGTAAAACAAGCGAGAAAAACAAACGGAAATCGA ATTCTACGTCATCATCTtcatcaaccaatcaaaatacagATCTTTCATCA ACAGCCAATCAAATGGCAACTACAAACAATAACAACAATAGTACtataaa taataacaataatggtgAAACAGTGATCGATAAACAATCGAATGAAGTCG ATGAACAAATTCGATTGAAAAACGATTCAATCGAATCAACAGAAAAACAA ATTCTCGATCATAACACACGATTACCTGAAGACATAAACAATAAATATAA CTCGACTGCTCCCCGGCTGACACACCCACCGTACACCTTTCATACTTATC AAGGCACGTACTGTCCTTCATCATATGGCTCTATGGAGCCGCGCGTCGTA AATGGAGTCTCATACCCTGTATCTGTTGAAGGTGTCAAGGGTGAAAGCTA TGGCCGTAACACTCTAGTAAATAATGGTGATTTAGACTGGCGGGCTTAGG AGCTACTAAAAATGCTTATATTTCTAGTTTTTTTGCTATGTAAAtatctt aaaaagaaaattttatgaagaCGTGATATAACATAGAAAGCATTATTTCC TATTTATATCTTTATTAtggtttttgaaaactttaatcGACACTTTAAAT TGTTGAGGGTGTACCGtaaaattttgtatattttagATGTATGTTTTAGA GGGATCATTTTTATCGGTTTTTATTATATTCCAAGTTAtctttttaccaa aaatataTACTATTTGATTTTTAGAACGTGTTGAGtaaaatttttatatg attGATTAATAATTTCTTGATATTCATAATGTAATCTTTAATTGACAAAT CGTTTCAAAATATA

Coding sequence (CDS) from alignment at sc0000012:939944..947157+

>TCONS_00001849 ID=TCONS_00001849|Name=TCONS_00001849|organism=Clytia hemisphaerica|type=CDS|length=2682bp|location=Sequence derived from alignment at sc0000012:939944..947157+ (Clytia hemisphaerica)
ATGAGAATTATGATGCATAATCAACCGTGTCATCAATTTTACAGTGTAGA
TGGTATCTTATCCGCAATGTCCCCTTCACACCAGCAACGGCACTGTGAGC
AATCGGTAGTATCGGGCGGCGGTGGACAGCCAATGCCACCACCttcacat
tcaccagcaccatacTGGCATGCTGGGAGTCATTATGGAGCAGAACACAG
CGCAATAACCCATGGCTATCCTCCACCATACGCACGCCGAGGTCATCGAA
GGAATCGAACCACATTCACACGACAACAACTCGAAGAACTCGAAAAATTA
TTCGATAGCACGCATTATCCCGATGTTTTCGCGAGAGAAGAGTTAGCATC
AAGGATCAGTTTAACAGAGGCTAGAGTACAGGTATGGTTCCAAAATCGTC
GTGCAAAGTTTCGTAAAACAAGCGAGAAAAACAAACGGAAATCGAATTCT
ACGTCATCATCTtcatcaaccaatcaaaatacagATCTTTCATCAACAGC
CAATCAAATGGCAACTACAAACAATAACAACAATAGTACtataaataata
acaataatggtgAAACAGTGATCGATAAACAATCGAATGAAGTCGATGAA
CAAATTCGATTGAAAAACGATTCAATCGAATCAACAGAAAAACAAATTCT
CGATCATAACACACGATTACCTGAAGACATAAACAATAAATATAACTCGA
CTGCTCCCCGGCTGACACACCCACCGTACACCTTTCATACTTATCAAGGC
ACGTACTGTCCTTCATCATATGGCTCTATGGAGCCGCGCGTCGTAAATGG
AGTCTCATACCCTGTATCTGTTGAAGGTGTCAAGGGTGAAAGCTATGGCC
GTAACACTCTAGTAAATAATGGTGATTTAGACTGGCGGGCTTAGATGAGA
ATTATGATGCATAATCAACCGTGTCATCAATTTTACAGTGTAGATGGTAT
CTTATCCGCAATGTCCCCTTCACACCAGCAACGGCACTGTGAGCAATCGG
TAGTATCGGGCGGCGGTGGACAGCCAATGCCACCACCttcacattcacca
gcaccatacTGGCATGCTGGGAGTCATTATGGAGCAGAACACAGCGCAAT
AACCCATGGCTATCCTCCACCATACGCACGCCGAGGTCATCGAAGGAATC
GAACCACATTCACACGACAACAACTCGAAGAACTCGAAAAATTATTCGAT
AGCACGCATTATCCCGATGTTTTCGCGAGAGAAGAGTTAGCATCAAGGAT
CAGTTTAACAGAGGCTAGAGTACAGGTATGGTTCCAAAATCGTCGTGCAA
AGTTTCGTAAAACAAGCGAGAAAAACAAACGGAAATCGAATTCTACGTCA
TCATCTtcatcaaccaatcaaaatacagATCTTTCATCAACAGCCAATCA
AATGGCAACTACAAACAATAACAACAATAGTACtataaataataacaata
atggtgAAACAGTGATCGATAAACAATCGAATGAAGTCGATGAACAAATT
CGATTGAAAAACGATTCAATCGAATCAACAGAAAAACAAATTCTCGATCA
TAACACACGATTACCTGAAGACATAAACAATAAATATAACTCGACTGCTC
CCCGGCTGACACACCCACCGTACACCTTTCATACTTATCAAGGCACGTAC
TGTCCTTCATCATATGGCTCTATGGAGCCGCGCGTCGTAAATGGAGTCTC
ATACCCTGTATCTGTTGAAGGTGTCAAGGGTGAAAGCTATGGCCGTAACA
CTCTAGTAAATAATGGTGATTTAGACTGGCGGGCTTAGATGAGAATTATG
ATGCATAATCAACCGTGTCATCAATTTTACAGTGTAGATGGTATCTTATC
CGCAATGTCCCCTTCACACCAGCAACGGCACTGTGAGCAATCGGTAGTAT
CGGGCGGCGGTGGACAGCCAATGCCACCACCttcacattcaccagcacca
tacTGGCATGCTGGGAGTCATTATGGAGCAGAACACAGCGCAATAACCCA
TGGCTATCCTCCACCATACGCACGCCGAGGTCATCGAAGGAATCGAACCA
CATTCACACGACAACAACTCGAAGAACTCGAAAAATTATTCGATAGCACG
CATTATCCCGATGTTTTCGCGAGAGAAGAGTTAGCATCAAGGATCAGTTT
AACAGAGGCTAGAGTACAGGTATGGTTCCAAAATCGTCGTGCAAAGTTTC
GTAAAACAAGCGAGAAAAACAAACGGAAATCGAATTCTACGTCATCATCT
tcatcaaccaatcaaaatacagATCTTTCATCAACAGCCAATCAAATGGC
AACTACAAACAATAACAACAATAGTACtataaataataacaataatggtg
AAACAGTGATCGATAAACAATCGAATGAAGTCGATGAACAAATTCGATTG
AAAAACGATTCAATCGAATCAACAGAAAAACAAATTCTCGATCATAACAC
ACGATTACCTGAAGACATAAACAATAAATATAACTCGACTGCTCCCCGGC
TGACACACCCACCGTACACCTTTCATACTTATCAAGGCACGTACTGTCCT
TCATCATATGGCTCTATGGAGCCGCGCGTCGTAAATGGAGTCTCATACCC
TGTATCTGTTGAAGGTGTCAAGGGTGAAAGCTATGGCCGTAACACTCTAG
TAAATAATGGTGATTTAGACTGGCGGGCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000977XLOC_000977Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001849-proteinTCONS_00001849-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001849-exon-sc0000012-1491911889:939944..940055TCONS_00001849-exon-sc0000012-1491911889:939944..940055Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1510915933:939944..940055TCONS_00001849-exon-sc0000012-1510915933:939944..940055Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1575043694:939944..940055TCONS_00001849-exon-sc0000012-1575043694:939944..940055Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1491911889:941854..942105TCONS_00001849-exon-sc0000012-1491911889:941854..942105Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1510915933:941854..942105TCONS_00001849-exon-sc0000012-1510915933:941854..942105Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1575043694:941854..942105TCONS_00001849-exon-sc0000012-1575043694:941854..942105Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1491911889:945565..945758TCONS_00001849-exon-sc0000012-1491911889:945565..945758Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1510915933:945565..945758TCONS_00001849-exon-sc0000012-1510915933:945565..945758Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1575043694:945565..945758TCONS_00001849-exon-sc0000012-1575043694:945565..945758Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1491911889:946280..947157TCONS_00001849-exon-sc0000012-1491911889:946280..947157Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1510915933:946280..947157TCONS_00001849-exon-sc0000012-1510915933:946280..947157Clytia hemisphaericaexon
TCONS_00001849-exon-sc0000012-1575043694:946280..947157TCONS_00001849-exon-sc0000012-1575043694:946280..947157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:939944..947157 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.092437 0 0 0.0243655 0 0 0 0 0 0 0 20.9505 19.7663 0 0.0321635 12.8175 11.2335 1.82101 2.65333 6.38625 5.75691 1.50659 0.187082 0 0.130789
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
Blast
BLAST of TCONS_00001849 vs. Swiss-Prot (Human)
Match: DRGX (Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.907e-24
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 1
Query:  406 YARRGHRRNRTTFTRQQLEELEKLFDSTHYPDVFAREELASRISLTEARVQVWFQNRRAKFR 591
            + RR  RRNRTTFT QQLE LE +F  THYPDVF REELA +I+LTEARVQVWFQNRRAK+R
Sbjct:   28 FLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 89          
The following BLAST results are available for this feature:
BLAST of TCONS_00001849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DRGX1.907e-2475.81Dorsal root ganglia homeobox protein OS=Homo sapie... [more]
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