TCONS_00001833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001833
Unique NameTCONS_00001833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001833 ID=TCONS_00001833|Name=TCONS_00001833|organism=Clytia hemisphaerica|type=transcript|length=1172bp
CCAGAGCCGCCATGTGCACCACCACCAACAGAAGCTAAAGAAGATAAACC
TCCCACAGAAGCTAAAGACGATGGAGATAAACCTCCACCGAAGAAACCGG
CAACAAAGAAAGTTGACATCGAAGCTTTAGAAGACGCCGAAACTCCAAAG
TCGAGACATAGACGACAATTAGTACCAACACATTATTATGGTCCACCAAG
TGCAGGATGGGGTggtttccacccaggacatacTGGTGGAGGTTGGGGTG
CTCCTTACTGGTACAAAAAACGAACTCACACTCCACAAGTCAGACAATTA
GTACCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttcca
cccaggacatacTGGCGGAGGTTGGGGTGCTCCTTATTGGTATAAGAAAA
GCGATACGAAGAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTTCCA
ACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttccacccagg
acATACTGGTGGAGGTTGGGGTGCTCCTTATTGGTACAAAAAAAGCGAAA
CGAAAAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTGCCAACGCAT
TATTATGGTCCACCAAGTGCGGGATGGGGTggtttccacccaggacatac
TGGCGGAGGATGGGGTGCTCCTTATTGGTACAAAAAAAGCGAGACAAAGA
ATCCAGGAAAAACTCACTCTACAAAACAATTAGTACCAACGCATTATTAT
GGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATACTGGTGG
AGGATGGGGCGCTCCTTATTGGTACAAaaaaagtgaGACCAAGAATCCAG
GAAAAACACACTCTACAAAACAATTAGTACCAACACATTATTATGGTCCA
CCAAGTGCAGGATGGGGTggtttccacccaggacatacTGGCGGTGGATG
GGGCGCTCCTTATTGGTATAAAAAAAGCGAAACGAAGAATCCTGAAAAGA
CTCACTCTGCAAAACAATTAGTACCAACACATTATTATGGTCCACCAAGT
GCAGGATGGGGTGGTTTCCATCCAGGACATACTGGCGGAGGATGGGGCGC
TCCTTATTGGTATAAGTAAGTGATTTATACCTAGTTTAgtgtatttttgt
aaatttgaaaatttgttagaat
Run BLAST on NCBI

transcript from alignment at sc0000012:790877..796310+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001833 ID=TCONS_00001833|Name=TCONS_00001833|organism=Clytia hemisphaerica|type=transcript|length=5434bp|location=Sequence derived from alignment at sc0000012:790877..796310+ (Clytia hemisphaerica)
CCAGAGCCGCCATGTGCACCACCACCAACAGAAGCTAAAGAAGATAAACC TCCCACAGAAGCTAAAGACGATGGAGATAAACCTCCACCGAAGAAACCGG CAACAAAGTAAGCAATGACGATTCTTTCAACATTCTTAcgaacaaaaata aagaaactgaGACACATTACGATCATCTTTAGAACAtttgagcatatttt ttttttttaaatctttgagcAGCTGAGACAGAAAATTCAATTCttcctat aaaaaatgttttcaaaaacaccTTTTAATAAGCATTATTCTTTTCGTTAC AGGAAAGTTGACATCGAAGCTTTAGAAGACGCCGAAACTCCAAAGTCGAG ACATAGACGACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAG GATGGGGTggtttccacccaggacatacTGGCGGTGGTTGGGGTGCTCCT TATTGGTACAAGTAAGTTTACCGATTTTATGACAGCTGTTTATGCATGAC GTGTTGATTGATTAATAATATGTTTTCTTCTCCGTATATGAAGCTACTAC TATGACTGTTTCATCGACTTTGATAACATAATGAGCTCTTCAGGGAAACT AATTCATAacatttcccatgttcaaacaAGTATTCCAGGAATTAGGGAGT TCCCCTATTAAGCTTTTGGCGAATCTGTCTCAAAAATGATGCTTTTTTCT CGTTTTAAACTGATGCctgtttgacatttttaaatatCTATACCGACCAA TCCAAGAGATTAAGCATTGTttaagaaatctaaaaattttgggaTTTTAG CTACTATTGTTTAAcactaatttttcttttttattcgtAGAAAACGAACT CACACTCCACAAGTCAGACAATTAGTACCAACACATTATTATGGTCCACC AAGTGCAGGATGGGGCggtttccacccaggacatacTGGTGGAGGTTGGG GTGCTCCTTACTGGTACAAGTAAGTCCTCCATTTACTCtaacaaaatcaa taaacacCGTCACTCTAATACTGTTCAGTTTCATTACTGTTGAAAAATAT TACCCCTTACTATTACTATTTAGTAATGGTAATGGAAATAAATTCCCTTA GAGCTCAAATttatttcaacaaaaatcaTTGATAATCATTAACTGATAAA CCATCTTTAGAGATCTTCCCCTTGGCGTGAAACGAATTTTTCGAAGGAAT CTTCTTGTTGTGATCTATTGAGTATTGTTGGGATAGATTGGcaaattttt gaagaatatttttcataaaattgattttctgcCTTATAGAAAACGAACTC ACACTCCACAAGTCAGACAATTAGTACCAACACATTATTATGGTCCACCA AGTGCAGGATGGGGTGGTTTCCAGCCAGGACNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNCCAGGACATACTGGTGGAGGTTGGGGTGCTCCTTACTG GTACAAGTAAGTCCTCCATTTACTCttacaaaatcaataaacacCGTCAC TCTAATACTGTTCAGTTTCATTACTGTTGAAAAATATTACCCCTTACTAT TACTATTTAGTAATGGTAATGGAAATAAATTCCCTTAGAGCTCAAATtta tttcaacaaaaatcaTTGATAATCATTAACTGATAAACAACCATCTTTAG AGATCTTCCCCTTGACGTGAAACGAATTTTTCGAAGGAATCTTCTTGTTG TATCTATTGAGCATTGTTGGGATAGATTGGcaaatttttgaagaatattt tttataaaattgattttctgcCTTATAGAAAACGAACTCACACTCCACAA GTCAGACAATTAGTACCAACACATTATTATGGCCCACCAAGTGCAGGATG GGGTggtttccacccaggacatacTGGCGGAGGTTGGGGTGCTCCTTATT GGTATAAGTAAGATAATATCTATGATAAAATAAGGAATGTTCAACTTCAA TTGCTTTCCAAAGCTAACAACGTCTTGTTTTGTGCGTCAGAACTATGGGT TGTTCCTAATCGTTTCAGTTACTCCGACGTCCTCAAAATAGTAGAATAAT AAACTTGGTATAGTTTCTCGTAGTAAATGATGAAATAGATTCACCGGCTA CAATAGAATAAAGCGTACTTGAGTGCATCTATTTTGAGTTACTTTCATTA TTATGTACACTTTTAGGAAAAGCGATACGAAGAATCCTGAAAAGACTCAC TCTGCAAAACAATTAGTTCCAACACATTATTATGGCCCACCAAGTGCAGG ATGGGGTggtttccacccaggacatacTGGCGGAGGTTGGGGTTCCCCTT ATTGGTACAAGTAAGTTAATATTTGTGAtgtaaagcaaaaaaaagtttaa ctttCGCTGCTATCAAAAGCTAACAAAGTCTTGTTTGGAAGCTGAAACGA TACTAATATTTTAGATACGGCCTACGAGGTTTCGGTGTTGCAGAAATCAA TCGTTTTTACTCGGAATTCGGGTAATATTACGGAATCCTAAAATTGGTTC GGTATCTGAAATAGACGTATTTGTACGTCAAAATCTGGGTGATGAAAAGA TTACATTCTTGAATTTCGGAATTTTTGCAAGATggctcaaaaacaaaatt tttcggtttttcgaaaatcagaaCCCTCGTACGCCCCGCCCCCTATACTA CACTAAGAAGTATTTCCAgagattttgacattttagaaAATAGATTTAAG TACTAGAGACGCCTACCCATTACGTCCTATGTATGGTCGATTGAGATTTC TTAAGCATTTTCCAATTGCTTATATcccatttttttagaaaagacGATGT ATCACCAAAGCAGCTAGTACCAACACATTATTATGGTCCACCAAGTGCAG GATGGGGCGGTTTCCACCCAGGACACACTGGTGGAGGTTGGGGTGCTCCT TATTGGTATAAGTAAGTTTGAACGAACATACTTTGATTTCCTCGGCTATT TCGATGTTTAAACTTGCGCACAGCTTTCTTGAAGAATCCTCTAAACATGT TAGAGCTTTTGCATATACTGGTAATGTGAGGAAAAGCATTGCCAAAATAA TGCAATGCTTTAATAAAATACGATTGGGAGATATTCTCTTTATATCTTTA GGTTATAATGTTTTTCTATTCGAGTTGTAGCACTGAACTAAAGTTGGCAA CACTATTCTGAATTATAATGGGAACTATATTATTTTACTTAAACCAACAG AAAACGAACTCACACTCCACAAGTTAGACAATTAGTACCAACACACTATT ATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCAGCCAGGACATACTGGT GGAGGTTGGGGTGCTCCTTATTGGTACAAGTAAGTTGTTTAGATTTCAAA GGCGTAGTCAGATAGTTTGAGATATTTGGTCTTTAGATTCCTCTTAATAT TTCTGAGCAAACTTTTTTGTAAGCAATAGATCTCTCAACGTGGAAACCCT GTGTGAACCCATCTTCAACGTTTTCAAAACatcgtttttcaaacttacaa AATCATTTTAGCAAAAAGAATTGGGGGTTTACCgccaaactaaaaaaaat atacAGACCAAAAGTCTTTTACCGTCTGGTAAGCCCTTCTAAAAAGGATC TACAAATGGCTAATAGACCTTTGTTGCCTTTATCATAAAAGTCTAATATC AAAGTTTCAAGTCTAATATTTACCGTTGTTTTCATATAAATAGAAAAAGC GAAACGAAAAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTGCCAAC GCATTATTATGGTCCACCAAGTGCGGGATGGGGTggtttccacccaggac atacTGGCGGAGGATGGGGTGCTCCTTATTGGTACAAGTAAGTTGAACAT TTTGATCATCTTTGCATGGTAACCCAAATCAAAGTTACTGCAAACATAGT TACCTAAAAGCTTCCTTTTCGAAGATTTTGACTTACTTGTGGCTCGTTCG CCTACCTTTTGTCAGGTAGTAGTTCATTTATCTACTGTATTTTCAAGTGG TCGTTGTAATTCGTGTCTTCACTTCGTCATTTGTCTTTACAGAAAAAGCG AGACAAAGAATCCAGGAAAAACTCACTCTACAAAACAATTAGTACCAACG CATTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACA TACTGGTGGAGGATGGGGCGCTCCTTATTGGTACAAGTAAGTATACTGAT ACCTTTTGGTAGCCATTTACGACAATGATGACGAAAATGTTTTCAGTCTC GTCAAAATTTGCCATTTCTTAGAAAGTGATGAGAAACTCATGTATCTAGT GATGTAGTATATAAGCTCAAGTAGACTGATCTGTATTAAGGAATAAGAAT TATAATTATTTTGAAAGAGGATTTGccacaatacacctttccccttgatt tcaattaaaaacgtttatattttttaccattttaattttttcagaaaaag tgaGACCAAGAATCCAGGAAAAACACACTCTACAAAACAATTAGTACCAA CACATTATTATGGTCCACCAAGTGCAGGATGGGGTggtttccacccagga catacTGGCGGTGGATGGGGCGCTCCTTATTGGTATAAGTaagtcaattt taaaagttattttttgtgttttagcGATCCTTAGCAAGCTTAAGTATCGA TAgataaatcacgacgacggaagTTTTTCCTCTATCCTTGTTCATTAACG CTGCGGATTTTTTCTTCAGGCTAACCTGAAAGCAAGGTAGATTTGCCCCG TGTAGTACATACAGTACATACAAGCGGAGCTTCATTGTATAAACAATAAC ATAAGTTGATTTCTTTGAATGGTAAGTCTAAGTTATGCTCTCAGGTTAGC CTGTAGAAAAGTTCCGCAGCGCGAAAGAACAAGGCTAATGGAAAtccgtc cgtcgtcgtgattcaTCTATCGTTATTTAACCTCATTGTTGtgctcaaat aaaaaaagaaggtCAGCTTCCATATAAAAGCTCGTTATCATATTTTAGTT TCAGTACAATAGTTTTCTGTACAAGGTTGACTTGAACCTGCTTTGGAATA TTACACACTAGAGTCCGTCGTACAGGCTAACTATCTTTGTCATGGTAATA AGTTATAACTAGTCCTCCTTTACCTTACCTCAGAAAAAGCGAAACGAAGA ATCCTGAAAAGACTCACTCTGCAAAACAATTAGTACCAACACATTATTAT GGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATACTGGCGG AGGATGGGGCGCTCCTTATTGGTATAAGTAAGTGATTTATACCTAGTTTA gtgtatttttgtaaatttgaaaatttgttagaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000971XLOC_000971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001833-exon-sc0000012-1491911889:790877..790983TCONS_00001833-exon-sc0000012-1491911889:790877..790983Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:790877..790983TCONS_00001833-exon-sc0000012-1510915933:790877..790983Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:790877..790983TCONS_00001833-exon-sc0000012-1575043694:790877..790983Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:791179..791300TCONS_00001833-exon-sc0000012-1491911889:791179..791300Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:791179..791300TCONS_00001833-exon-sc0000012-1510915933:791179..791300Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:791179..791300TCONS_00001833-exon-sc0000012-1575043694:791179..791300Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:791809..791845TCONS_00001833-exon-sc0000012-1491911889:791809..791845Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:791809..791845TCONS_00001833-exon-sc0000012-1510915933:791809..791845Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:791809..791845TCONS_00001833-exon-sc0000012-1575043694:791809..791845Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:792755..792883TCONS_00001833-exon-sc0000012-1491911889:792755..792883Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:792755..792883TCONS_00001833-exon-sc0000012-1510915933:792755..792883Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:792755..792883TCONS_00001833-exon-sc0000012-1575043694:792755..792883Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:793143..793249TCONS_00001833-exon-sc0000012-1491911889:793143..793249Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:793143..793249TCONS_00001833-exon-sc0000012-1510915933:793143..793249Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:793143..793249TCONS_00001833-exon-sc0000012-1575043694:793143..793249Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:794269..794305TCONS_00001833-exon-sc0000012-1491911889:794269..794305Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:794269..794305TCONS_00001833-exon-sc0000012-1510915933:794269..794305Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:794269..794305TCONS_00001833-exon-sc0000012-1575043694:794269..794305Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:794670..794813TCONS_00001833-exon-sc0000012-1491911889:794670..794813Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:794670..794813TCONS_00001833-exon-sc0000012-1510915933:794670..794813Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:794670..794813TCONS_00001833-exon-sc0000012-1575043694:794670..794813Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:795019..795162TCONS_00001833-exon-sc0000012-1491911889:795019..795162Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:795019..795162TCONS_00001833-exon-sc0000012-1510915933:795019..795162Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:795019..795162TCONS_00001833-exon-sc0000012-1575043694:795019..795162Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:795421..795564TCONS_00001833-exon-sc0000012-1491911889:795421..795564Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:795421..795564TCONS_00001833-exon-sc0000012-1510915933:795421..795564Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:795421..795564TCONS_00001833-exon-sc0000012-1575043694:795421..795564Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:796110..796310TCONS_00001833-exon-sc0000012-1491911889:796110..796310Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:796110..796310TCONS_00001833-exon-sc0000012-1510915933:796110..796310Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:796110..796310TCONS_00001833-exon-sc0000012-1575043694:796110..796310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:790877..796310 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.699255 0 0.422677 4.4866e-10 0 0 0 0 0.12847 0 0 0 0 0 0 0 0 0 0 0 0 0.821419 1.94 1.98892 0 0 0 0 0.188764 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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