TCONS_00001833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001833
Unique NameTCONS_00001833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001833 ID=TCONS_00001833|Name=TCONS_00001833|organism=Clytia hemisphaerica|type=transcript|length=1172bp
CCAGAGCCGCCATGTGCACCACCACCAACAGAAGCTAAAGAAGATAAACC
TCCCACAGAAGCTAAAGACGATGGAGATAAACCTCCACCGAAGAAACCGG
CAACAAAGAAAGTTGACATCGAAGCTTTAGAAGACGCCGAAACTCCAAAG
TCGAGACATAGACGACAATTAGTACCAACACATTATTATGGTCCACCAAG
TGCAGGATGGGGTggtttccacccaggacatacTGGTGGAGGTTGGGGTG
CTCCTTACTGGTACAAAAAACGAACTCACACTCCACAAGTCAGACAATTA
GTACCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttcca
cccaggacatacTGGCGGAGGTTGGGGTGCTCCTTATTGGTATAAGAAAA
GCGATACGAAGAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTTCCA
ACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttccacccagg
acATACTGGTGGAGGTTGGGGTGCTCCTTATTGGTACAAAAAAAGCGAAA
CGAAAAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTGCCAACGCAT
TATTATGGTCCACCAAGTGCGGGATGGGGTggtttccacccaggacatac
TGGCGGAGGATGGGGTGCTCCTTATTGGTACAAAAAAAGCGAGACAAAGA
ATCCAGGAAAAACTCACTCTACAAAACAATTAGTACCAACGCATTATTAT
GGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATACTGGTGG
AGGATGGGGCGCTCCTTATTGGTACAAaaaaagtgaGACCAAGAATCCAG
GAAAAACACACTCTACAAAACAATTAGTACCAACACATTATTATGGTCCA
CCAAGTGCAGGATGGGGTggtttccacccaggacatacTGGCGGTGGATG
GGGCGCTCCTTATTGGTATAAAAAAAGCGAAACGAAGAATCCTGAAAAGA
CTCACTCTGCAAAACAATTAGTACCAACACATTATTATGGTCCACCAAGT
GCAGGATGGGGTGGTTTCCATCCAGGACATACTGGCGGAGGATGGGGCGC
TCCTTATTGGTATAAGTAAGTGATTTATACCTAGTTTAgtgtatttttgt
aaatttgaaaatttgttagaat
Run BLAST on NCBI

transcript from alignment at sc0000012:790877..796310+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001833 ID=TCONS_00001833|Name=TCONS_00001833|organism=Clytia hemisphaerica|type=transcript|length=5434bp|location=Sequence derived from alignment at sc0000012:790877..796310+ (Clytia hemisphaerica)
CCAGAGCCGCCATGTGCACCACCACCAACAGAAGCTAAAGAAGATAAACC
TCCCACAGAAGCTAAAGACGATGGAGATAAACCTCCACCGAAGAAACCGG
CAACAAAGTAAGCAATGACGATTCTTTCAACATTCTTAcgaacaaaaata
aagaaactgaGACACATTACGATCATCTTTAGAACAtttgagcatatttt
ttttttttaaatctttgagcAGCTGAGACAGAAAATTCAATTCttcctat
aaaaaatgttttcaaaaacaccTTTTAATAAGCATTATTCTTTTCGTTAC
AGGAAAGTTGACATCGAAGCTTTAGAAGACGCCGAAACTCCAAAGTCGAG
ACATAGACGACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAG
GATGGGGTggtttccacccaggacatacTGGCGGTGGTTGGGGTGCTCCT
TATTGGTACAAGTAAGTTTACCGATTTTATGACAGCTGTTTATGCATGAC
GTGTTGATTGATTAATAATATGTTTTCTTCTCCGTATATGAAGCTACTAC
TATGACTGTTTCATCGACTTTGATAACATAATGAGCTCTTCAGGGAAACT
AATTCATAacatttcccatgttcaaacaAGTATTCCAGGAATTAGGGAGT
TCCCCTATTAAGCTTTTGGCGAATCTGTCTCAAAAATGATGCTTTTTTCT
CGTTTTAAACTGATGCctgtttgacatttttaaatatCTATACCGACCAA
TCCAAGAGATTAAGCATTGTttaagaaatctaaaaattttgggaTTTTAG
CTACTATTGTTTAAcactaatttttcttttttattcgtAGAAAACGAACT
CACACTCCACAAGTCAGACAATTAGTACCAACACATTATTATGGTCCACC
AAGTGCAGGATGGGGCggtttccacccaggacatacTGGTGGAGGTTGGG
GTGCTCCTTACTGGTACAAGTAAGTCCTCCATTTACTCtaacaaaatcaa
taaacacCGTCACTCTAATACTGTTCAGTTTCATTACTGTTGAAAAATAT
TACCCCTTACTATTACTATTTAGTAATGGTAATGGAAATAAATTCCCTTA
GAGCTCAAATttatttcaacaaaaatcaTTGATAATCATTAACTGATAAA
CCATCTTTAGAGATCTTCCCCTTGGCGTGAAACGAATTTTTCGAAGGAAT
CTTCTTGTTGTGATCTATTGAGTATTGTTGGGATAGATTGGcaaattttt
gaagaatatttttcataaaattgattttctgcCTTATAGAAAACGAACTC
ACACTCCACAAGTCAGACAATTAGTACCAACACATTATTATGGTCCACCA
AGTGCAGGATGGGGTGGTTTCCAGCCAGGACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCCAGGACATACTGGTGGAGGTTGGGGTGCTCCTTACTG
GTACAAGTAAGTCCTCCATTTACTCttacaaaatcaataaacacCGTCAC
TCTAATACTGTTCAGTTTCATTACTGTTGAAAAATATTACCCCTTACTAT
TACTATTTAGTAATGGTAATGGAAATAAATTCCCTTAGAGCTCAAATtta
tttcaacaaaaatcaTTGATAATCATTAACTGATAAACAACCATCTTTAG
AGATCTTCCCCTTGACGTGAAACGAATTTTTCGAAGGAATCTTCTTGTTG
TATCTATTGAGCATTGTTGGGATAGATTGGcaaatttttgaagaatattt
tttataaaattgattttctgcCTTATAGAAAACGAACTCACACTCCACAA
GTCAGACAATTAGTACCAACACATTATTATGGCCCACCAAGTGCAGGATG
GGGTggtttccacccaggacatacTGGCGGAGGTTGGGGTGCTCCTTATT
GGTATAAGTAAGATAATATCTATGATAAAATAAGGAATGTTCAACTTCAA
TTGCTTTCCAAAGCTAACAACGTCTTGTTTTGTGCGTCAGAACTATGGGT
TGTTCCTAATCGTTTCAGTTACTCCGACGTCCTCAAAATAGTAGAATAAT
AAACTTGGTATAGTTTCTCGTAGTAAATGATGAAATAGATTCACCGGCTA
CAATAGAATAAAGCGTACTTGAGTGCATCTATTTTGAGTTACTTTCATTA
TTATGTACACTTTTAGGAAAAGCGATACGAAGAATCCTGAAAAGACTCAC
TCTGCAAAACAATTAGTTCCAACACATTATTATGGCCCACCAAGTGCAGG
ATGGGGTggtttccacccaggacatacTGGCGGAGGTTGGGGTTCCCCTT
ATTGGTACAAGTAAGTTAATATTTGTGAtgtaaagcaaaaaaaagtttaa
ctttCGCTGCTATCAAAAGCTAACAAAGTCTTGTTTGGAAGCTGAAACGA
TACTAATATTTTAGATACGGCCTACGAGGTTTCGGTGTTGCAGAAATCAA
TCGTTTTTACTCGGAATTCGGGTAATATTACGGAATCCTAAAATTGGTTC
GGTATCTGAAATAGACGTATTTGTACGTCAAAATCTGGGTGATGAAAAGA
TTACATTCTTGAATTTCGGAATTTTTGCAAGATggctcaaaaacaaaatt
tttcggtttttcgaaaatcagaaCCCTCGTACGCCCCGCCCCCTATACTA
CACTAAGAAGTATTTCCAgagattttgacattttagaaAATAGATTTAAG
TACTAGAGACGCCTACCCATTACGTCCTATGTATGGTCGATTGAGATTTC
TTAAGCATTTTCCAATTGCTTATATcccatttttttagaaaagacGATGT
ATCACCAAAGCAGCTAGTACCAACACATTATTATGGTCCACCAAGTGCAG
GATGGGGCGGTTTCCACCCAGGACACACTGGTGGAGGTTGGGGTGCTCCT
TATTGGTATAAGTAAGTTTGAACGAACATACTTTGATTTCCTCGGCTATT
TCGATGTTTAAACTTGCGCACAGCTTTCTTGAAGAATCCTCTAAACATGT
TAGAGCTTTTGCATATACTGGTAATGTGAGGAAAAGCATTGCCAAAATAA
TGCAATGCTTTAATAAAATACGATTGGGAGATATTCTCTTTATATCTTTA
GGTTATAATGTTTTTCTATTCGAGTTGTAGCACTGAACTAAAGTTGGCAA
CACTATTCTGAATTATAATGGGAACTATATTATTTTACTTAAACCAACAG
AAAACGAACTCACACTCCACAAGTTAGACAATTAGTACCAACACACTATT
ATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCAGCCAGGACATACTGGT
GGAGGTTGGGGTGCTCCTTATTGGTACAAGTAAGTTGTTTAGATTTCAAA
GGCGTAGTCAGATAGTTTGAGATATTTGGTCTTTAGATTCCTCTTAATAT
TTCTGAGCAAACTTTTTTGTAAGCAATAGATCTCTCAACGTGGAAACCCT
GTGTGAACCCATCTTCAACGTTTTCAAAACatcgtttttcaaacttacaa
AATCATTTTAGCAAAAAGAATTGGGGGTTTACCgccaaactaaaaaaaat
atacAGACCAAAAGTCTTTTACCGTCTGGTAAGCCCTTCTAAAAAGGATC
TACAAATGGCTAATAGACCTTTGTTGCCTTTATCATAAAAGTCTAATATC
AAAGTTTCAAGTCTAATATTTACCGTTGTTTTCATATAAATAGAAAAAGC
GAAACGAAAAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTGCCAAC
GCATTATTATGGTCCACCAAGTGCGGGATGGGGTggtttccacccaggac
atacTGGCGGAGGATGGGGTGCTCCTTATTGGTACAAGTAAGTTGAACAT
TTTGATCATCTTTGCATGGTAACCCAAATCAAAGTTACTGCAAACATAGT
TACCTAAAAGCTTCCTTTTCGAAGATTTTGACTTACTTGTGGCTCGTTCG
CCTACCTTTTGTCAGGTAGTAGTTCATTTATCTACTGTATTTTCAAGTGG
TCGTTGTAATTCGTGTCTTCACTTCGTCATTTGTCTTTACAGAAAAAGCG
AGACAAAGAATCCAGGAAAAACTCACTCTACAAAACAATTAGTACCAACG
CATTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACA
TACTGGTGGAGGATGGGGCGCTCCTTATTGGTACAAGTAAGTATACTGAT
ACCTTTTGGTAGCCATTTACGACAATGATGACGAAAATGTTTTCAGTCTC
GTCAAAATTTGCCATTTCTTAGAAAGTGATGAGAAACTCATGTATCTAGT
GATGTAGTATATAAGCTCAAGTAGACTGATCTGTATTAAGGAATAAGAAT
TATAATTATTTTGAAAGAGGATTTGccacaatacacctttccccttgatt
tcaattaaaaacgtttatattttttaccattttaattttttcagaaaaag
tgaGACCAAGAATCCAGGAAAAACACACTCTACAAAACAATTAGTACCAA
CACATTATTATGGTCCACCAAGTGCAGGATGGGGTggtttccacccagga
catacTGGCGGTGGATGGGGCGCTCCTTATTGGTATAAGTaagtcaattt
taaaagttattttttgtgttttagcGATCCTTAGCAAGCTTAAGTATCGA
TAgataaatcacgacgacggaagTTTTTCCTCTATCCTTGTTCATTAACG
CTGCGGATTTTTTCTTCAGGCTAACCTGAAAGCAAGGTAGATTTGCCCCG
TGTAGTACATACAGTACATACAAGCGGAGCTTCATTGTATAAACAATAAC
ATAAGTTGATTTCTTTGAATGGTAAGTCTAAGTTATGCTCTCAGGTTAGC
CTGTAGAAAAGTTCCGCAGCGCGAAAGAACAAGGCTAATGGAAAtccgtc
cgtcgtcgtgattcaTCTATCGTTATTTAACCTCATTGTTGtgctcaaat
aaaaaaagaaggtCAGCTTCCATATAAAAGCTCGTTATCATATTTTAGTT
TCAGTACAATAGTTTTCTGTACAAGGTTGACTTGAACCTGCTTTGGAATA
TTACACACTAGAGTCCGTCGTACAGGCTAACTATCTTTGTCATGGTAATA
AGTTATAACTAGTCCTCCTTTACCTTACCTCAGAAAAAGCGAAACGAAGA
ATCCTGAAAAGACTCACTCTGCAAAACAATTAGTACCAACACATTATTAT
GGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATACTGGCGG
AGGATGGGGCGCTCCTTATTGGTATAAGTAAGTGATTTATACCTAGTTTA
gtgtatttttgtaaatttgaaaatttgttagaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000971XLOC_000971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001833-exon-sc0000012-1491911889:790877..790983TCONS_00001833-exon-sc0000012-1491911889:790877..790983Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:790877..790983TCONS_00001833-exon-sc0000012-1510915933:790877..790983Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:790877..790983TCONS_00001833-exon-sc0000012-1575043694:790877..790983Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:791179..791300TCONS_00001833-exon-sc0000012-1491911889:791179..791300Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:791179..791300TCONS_00001833-exon-sc0000012-1510915933:791179..791300Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:791179..791300TCONS_00001833-exon-sc0000012-1575043694:791179..791300Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:791809..791845TCONS_00001833-exon-sc0000012-1491911889:791809..791845Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:791809..791845TCONS_00001833-exon-sc0000012-1510915933:791809..791845Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:791809..791845TCONS_00001833-exon-sc0000012-1575043694:791809..791845Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:792755..792883TCONS_00001833-exon-sc0000012-1491911889:792755..792883Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:792755..792883TCONS_00001833-exon-sc0000012-1510915933:792755..792883Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:792755..792883TCONS_00001833-exon-sc0000012-1575043694:792755..792883Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:793143..793249TCONS_00001833-exon-sc0000012-1491911889:793143..793249Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:793143..793249TCONS_00001833-exon-sc0000012-1510915933:793143..793249Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:793143..793249TCONS_00001833-exon-sc0000012-1575043694:793143..793249Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:794269..794305TCONS_00001833-exon-sc0000012-1491911889:794269..794305Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:794269..794305TCONS_00001833-exon-sc0000012-1510915933:794269..794305Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:794269..794305TCONS_00001833-exon-sc0000012-1575043694:794269..794305Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:794670..794813TCONS_00001833-exon-sc0000012-1491911889:794670..794813Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:794670..794813TCONS_00001833-exon-sc0000012-1510915933:794670..794813Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:794670..794813TCONS_00001833-exon-sc0000012-1575043694:794670..794813Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:795019..795162TCONS_00001833-exon-sc0000012-1491911889:795019..795162Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:795019..795162TCONS_00001833-exon-sc0000012-1510915933:795019..795162Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:795019..795162TCONS_00001833-exon-sc0000012-1575043694:795019..795162Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:795421..795564TCONS_00001833-exon-sc0000012-1491911889:795421..795564Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:795421..795564TCONS_00001833-exon-sc0000012-1510915933:795421..795564Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:795421..795564TCONS_00001833-exon-sc0000012-1575043694:795421..795564Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1491911889:796110..796310TCONS_00001833-exon-sc0000012-1491911889:796110..796310Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1510915933:796110..796310TCONS_00001833-exon-sc0000012-1510915933:796110..796310Clytia hemisphaericaexon
TCONS_00001833-exon-sc0000012-1575043694:796110..796310TCONS_00001833-exon-sc0000012-1575043694:796110..796310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:790877..796310 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.699255	0	0.422677	4.4866e-10	0	0	0	0	0.12847	0	0	0	0	0	0	0	0	0	0	0	0	0.821419	1.94	1.98892	0	0	0	0	0.188764	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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