TCONS_00001827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001827
Unique NameTCONS_00001827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001827 ID=TCONS_00001827|Name=TCONS_00001827|organism=Clytia hemisphaerica|type=transcript|length=1019bp
GGAGCACCAGAGCCGCCATGTGCACCACCACCAACAGAAGCTAAAGAAGA
TAAACCTCCCACAGAAGCTAAAGACGATGGAGATAAACCTCCACCGAAGA
AACCGGCAACAAAGAAAGTTGACATCGAAGCTTTAGAAGACGCCGAAACT
CCAAAGTCGAGACATAGACGACAATTAGTACCAACACATTATTATGGTCC
ACCAAGTGCAGGATGGGGTggtttccacccaggacatacTGGTGGAGGTT
GGGGTGCTCCTTACTGGTACAAAAAACGAACTCACACTCCACAAGTCAGA
CAATTAGTACCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTgg
tttccacccaggacatacTGGCGGAGGTTGGGGTGCTCCTTATTGGTATA
AGAAAAGCGATACGAAGAATCCTGAAAAGACTCACTCTGCAAAACAATTA
GTTCCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttcca
cccaggacatacTGGCGGAGGTTGGGGTGCTCCTTATTGGTATAAAAAAC
GAACTCACACTCCACAAGTTAGACAATTAGTACCAACACACTATTATGGT
CCACCAAGTGCAGGATGGGGTGGTTTCCAGCCAGGACATACTGGTGGAGG
TTGGGGTGCTCCTTATTGGTACAAAAAAAGCGAGACAAAGAATCCAGGAA
AAACTCACTCTACAAAACAATTAGTACCAACGCATTATTATGGTCCACCA
AGTGCAGGATGGGGTGGTTTCCATCCAGGACatacTGGCGGTGGATGGGG
CGCTCCTTATTGGTATAAAAAAAGCGAAACGAAGAATCCTGAAAAGACTC
ACTCTGCAAAACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCA
GGATGGGGTGGTTTCCATCCAGGACATACTGGCGGAGGATGGGGCGCTCC
TTATTGGTATAAGTAAGTGATTTATACCTAGTTTAgtgtatttttgtaaa
tttgaaaatttgttagaat
Run BLAST on NCBI

transcript from alignment at sc0000012:790871..796310+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001827 ID=TCONS_00001827|Name=TCONS_00001827|organism=Clytia hemisphaerica|type=transcript|length=5440bp|location=Sequence derived from alignment at sc0000012:790871..796310+ (Clytia hemisphaerica)
GGAGCACCAGAGCCGCCATGTGCACCACCACCAACAGAAGCTAAAGAAGA
TAAACCTCCCACAGAAGCTAAAGACGATGGAGATAAACCTCCACCGAAGA
AACCGGCAACAAAGTAAGCAATGACGATTCTTTCAACATTCTTAcgaaca
aaaataaagaaactgaGACACATTACGATCATCTTTAGAACAtttgagca
tattttttttttttaaatctttgagcAGCTGAGACAGAAAATTCAATTCt
tcctataaaaaatgttttcaaaaacaccTTTTAATAAGCATTATTCTTTT
CGTTACAGGAAAGTTGACATCGAAGCTTTAGAAGACGCCGAAACTCCAAA
GTCGAGACATAGACGACAATTAGTACCAACACATTATTATGGTCCACCAA
GTGCAGGATGGGGTggtttccacccaggacatacTGGCGGTGGTTGGGGT
GCTCCTTATTGGTACAAGTAAGTTTACCGATTTTATGACAGCTGTTTATG
CATGACGTGTTGATTGATTAATAATATGTTTTCTTCTCCGTATATGAAGC
TACTACTATGACTGTTTCATCGACTTTGATAACATAATGAGCTCTTCAGG
GAAACTAATTCATAacatttcccatgttcaaacaAGTATTCCAGGAATTA
GGGAGTTCCCCTATTAAGCTTTTGGCGAATCTGTCTCAAAAATGATGCTT
TTTTCTCGTTTTAAACTGATGCctgtttgacatttttaaatatCTATACC
GACCAATCCAAGAGATTAAGCATTGTttaagaaatctaaaaattttggga
TTTTAGCTACTATTGTTTAAcactaatttttcttttttattcgtAGAAAA
CGAACTCACACTCCACAAGTCAGACAATTAGTACCAACACATTATTATGG
TCCACCAAGTGCAGGATGGGGCggtttccacccaggacatacTGGTGGAG
GTTGGGGTGCTCCTTACTGGTACAAGTAAGTCCTCCATTTACTCtaacaa
aatcaataaacacCGTCACTCTAATACTGTTCAGTTTCATTACTGTTGAA
AAATATTACCCCTTACTATTACTATTTAGTAATGGTAATGGAAATAAATT
CCCTTAGAGCTCAAATttatttcaacaaaaatcaTTGATAATCATTAACT
GATAAACCATCTTTAGAGATCTTCCCCTTGGCGTGAAACGAATTTTTCGA
AGGAATCTTCTTGTTGTGATCTATTGAGTATTGTTGGGATAGATTGGcaa
atttttgaagaatatttttcataaaattgattttctgcCTTATAGAAAAC
GAACTCACACTCCACAAGTCAGACAATTAGTACCAACACATTATTATGGT
CCACCAAGTGCAGGATGGGGTGGTTTCCAGCCAGGACNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCAGGACATACTGGTGGAGGTTGGGGTGCTCC
TTACTGGTACAAGTAAGTCCTCCATTTACTCttacaaaatcaataaacac
CGTCACTCTAATACTGTTCAGTTTCATTACTGTTGAAAAATATTACCCCT
TACTATTACTATTTAGTAATGGTAATGGAAATAAATTCCCTTAGAGCTCA
AATttatttcaacaaaaatcaTTGATAATCATTAACTGATAAACAACCAT
CTTTAGAGATCTTCCCCTTGACGTGAAACGAATTTTTCGAAGGAATCTTC
TTGTTGTATCTATTGAGCATTGTTGGGATAGATTGGcaaatttttgaaga
atattttttataaaattgattttctgcCTTATAGAAAACGAACTCACACT
CCACAAGTCAGACAATTAGTACCAACACATTATTATGGCCCACCAAGTGC
AGGATGGGGTggtttccacccaggacatacTGGCGGAGGTTGGGGTGCTC
CTTATTGGTATAAGTAAGATAATATCTATGATAAAATAAGGAATGTTCAA
CTTCAATTGCTTTCCAAAGCTAACAACGTCTTGTTTTGTGCGTCAGAACT
ATGGGTTGTTCCTAATCGTTTCAGTTACTCCGACGTCCTCAAAATAGTAG
AATAATAAACTTGGTATAGTTTCTCGTAGTAAATGATGAAATAGATTCAC
CGGCTACAATAGAATAAAGCGTACTTGAGTGCATCTATTTTGAGTTACTT
TCATTATTATGTACACTTTTAGGAAAAGCGATACGAAGAATCCTGAAAAG
ACTCACTCTGCAAAACAATTAGTTCCAACACATTATTATGGCCCACCAAG
TGCAGGATGGGGTggtttccacccaggacatacTGGCGGAGGTTGGGGTT
CCCCTTATTGGTACAAGTAAGTTAATATTTGTGAtgtaaagcaaaaaaaa
gtttaactttCGCTGCTATCAAAAGCTAACAAAGTCTTGTTTGGAAGCTG
AAACGATACTAATATTTTAGATACGGCCTACGAGGTTTCGGTGTTGCAGA
AATCAATCGTTTTTACTCGGAATTCGGGTAATATTACGGAATCCTAAAAT
TGGTTCGGTATCTGAAATAGACGTATTTGTACGTCAAAATCTGGGTGATG
AAAAGATTACATTCTTGAATTTCGGAATTTTTGCAAGATggctcaaaaac
aaaatttttcggtttttcgaaaatcagaaCCCTCGTACGCCCCGCCCCCT
ATACTACACTAAGAAGTATTTCCAgagattttgacattttagaaAATAGA
TTTAAGTACTAGAGACGCCTACCCATTACGTCCTATGTATGGTCGATTGA
GATTTCTTAAGCATTTTCCAATTGCTTATATcccatttttttagaaaaga
cGATGTATCACCAAAGCAGCTAGTACCAACACATTATTATGGTCCACCAA
GTGCAGGATGGGGCGGTTTCCACCCAGGACACACTGGTGGAGGTTGGGGT
GCTCCTTATTGGTATAAGTAAGTTTGAACGAACATACTTTGATTTCCTCG
GCTATTTCGATGTTTAAACTTGCGCACAGCTTTCTTGAAGAATCCTCTAA
ACATGTTAGAGCTTTTGCATATACTGGTAATGTGAGGAAAAGCATTGCCA
AAATAATGCAATGCTTTAATAAAATACGATTGGGAGATATTCTCTTTATA
TCTTTAGGTTATAATGTTTTTCTATTCGAGTTGTAGCACTGAACTAAAGT
TGGCAACACTATTCTGAATTATAATGGGAACTATATTATTTTACTTAAAC
CAACAGAAAACGAACTCACACTCCACAAGTTAGACAATTAGTACCAACAC
ACTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCAGCCAGGACAT
ACTGGTGGAGGTTGGGGTGCTCCTTATTGGTACAAGTAAGTTGTTTAGAT
TTCAAAGGCGTAGTCAGATAGTTTGAGATATTTGGTCTTTAGATTCCTCT
TAATATTTCTGAGCAAACTTTTTTGTAAGCAATAGATCTCTCAACGTGGA
AACCCTGTGTGAACCCATCTTCAACGTTTTCAAAACatcgtttttcaaac
ttacaaAATCATTTTAGCAAAAAGAATTGGGGGTTTACCgccaaactaaa
aaaaatatacAGACCAAAAGTCTTTTACCGTCTGGTAAGCCCTTCTAAAA
AGGATCTACAAATGGCTAATAGACCTTTGTTGCCTTTATCATAAAAGTCT
AATATCAAAGTTTCAAGTCTAATATTTACCGTTGTTTTCATATAAATAGA
AAAAGCGAAACGAAAAATCCTGAAAAGACTCACTCTGCAAAACAATTAGT
GCCAACGCATTATTATGGTCCACCAAGTGCGGGATGGGGTggtttccacc
caggacatacTGGCGGAGGATGGGGTGCTCCTTATTGGTACAAGTAAGTT
GAACATTTTGATCATCTTTGCATGGTAACCCAAATCAAAGTTACTGCAAA
CATAGTTACCTAAAAGCTTCCTTTTCGAAGATTTTGACTTACTTGTGGCT
CGTTCGCCTACCTTTTGTCAGGTAGTAGTTCATTTATCTACTGTATTTTC
AAGTGGTCGTTGTAATTCGTGTCTTCACTTCGTCATTTGTCTTTACAGAA
AAAGCGAGACAAAGAATCCAGGAAAAACTCACTCTACAAAACAATTAGTA
CCAACGCATTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCC
AGGACATACTGGTGGAGGATGGGGCGCTCCTTATTGGTACAAGTAAGTAT
ACTGATACCTTTTGGTAGCCATTTACGACAATGATGACGAAAATGTTTTC
AGTCTCGTCAAAATTTGCCATTTCTTAGAAAGTGATGAGAAACTCATGTA
TCTAGTGATGTAGTATATAAGCTCAAGTAGACTGATCTGTATTAAGGAAT
AAGAATTATAATTATTTTGAAAGAGGATTTGccacaatacacctttcccc
ttgatttcaattaaaaacgtttatattttttaccattttaattttttcag
aaaaagtgaGACCAAGAATCCAGGAAAAACACACTCTACAAAACAATTAG
TACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTggtttccac
ccaggacatacTGGCGGTGGATGGGGCGCTCCTTATTGGTATAAGTaagt
caattttaaaagttattttttgtgttttagcGATCCTTAGCAAGCTTAAG
TATCGATAgataaatcacgacgacggaagTTTTTCCTCTATCCTTGTTCA
TTAACGCTGCGGATTTTTTCTTCAGGCTAACCTGAAAGCAAGGTAGATTT
GCCCCGTGTAGTACATACAGTACATACAAGCGGAGCTTCATTGTATAAAC
AATAACATAAGTTGATTTCTTTGAATGGTAAGTCTAAGTTATGCTCTCAG
GTTAGCCTGTAGAAAAGTTCCGCAGCGCGAAAGAACAAGGCTAATGGAAA
tccgtccgtcgtcgtgattcaTCTATCGTTATTTAACCTCATTGTTGtgc
tcaaataaaaaaagaaggtCAGCTTCCATATAAAAGCTCGTTATCATATT
TTAGTTTCAGTACAATAGTTTTCTGTACAAGGTTGACTTGAACCTGCTTT
GGAATATTACACACTAGAGTCCGTCGTACAGGCTAACTATCTTTGTCATG
GTAATAAGTTATAACTAGTCCTCCTTTACCTTACCTCAGAAAAAGCGAAA
CGAAGAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTACCAACACAT
TATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATAC
TGGCGGAGGATGGGGCGCTCCTTATTGGTATAAGTAAGTGATTTATACCT
AGTTTAgtgtatttttgtaaatttgaaaatttgttagaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000971XLOC_000971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001827-exon-sc0000012-1491911889:790871..790983TCONS_00001827-exon-sc0000012-1491911889:790871..790983Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1510915933:790871..790983TCONS_00001827-exon-sc0000012-1510915933:790871..790983Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1575043694:790871..790983TCONS_00001827-exon-sc0000012-1575043694:790871..790983Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1491911889:791179..791300TCONS_00001827-exon-sc0000012-1491911889:791179..791300Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1510915933:791179..791300TCONS_00001827-exon-sc0000012-1510915933:791179..791300Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1575043694:791179..791300TCONS_00001827-exon-sc0000012-1575043694:791179..791300Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1491911889:791809..791845TCONS_00001827-exon-sc0000012-1491911889:791809..791845Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1510915933:791809..791845TCONS_00001827-exon-sc0000012-1510915933:791809..791845Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1575043694:791809..791845TCONS_00001827-exon-sc0000012-1575043694:791809..791845Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1491911889:792755..792883TCONS_00001827-exon-sc0000012-1491911889:792755..792883Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1510915933:792755..792883TCONS_00001827-exon-sc0000012-1510915933:792755..792883Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1575043694:792755..792883TCONS_00001827-exon-sc0000012-1575043694:792755..792883Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1491911889:793143..793261TCONS_00001827-exon-sc0000012-1491911889:793143..793261Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1510915933:793143..793261TCONS_00001827-exon-sc0000012-1510915933:793143..793261Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1575043694:793143..793261TCONS_00001827-exon-sc0000012-1575043694:793143..793261Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1491911889:793863..793887TCONS_00001827-exon-sc0000012-1491911889:793863..793887Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1510915933:793863..793887TCONS_00001827-exon-sc0000012-1510915933:793863..793887Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1575043694:793863..793887TCONS_00001827-exon-sc0000012-1575043694:793863..793887Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1491911889:794177..794305TCONS_00001827-exon-sc0000012-1491911889:794177..794305Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1510915933:794177..794305TCONS_00001827-exon-sc0000012-1510915933:794177..794305Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1575043694:794177..794305TCONS_00001827-exon-sc0000012-1575043694:794177..794305Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1491911889:795019..795125TCONS_00001827-exon-sc0000012-1491911889:795019..795125Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1510915933:795019..795125TCONS_00001827-exon-sc0000012-1510915933:795019..795125Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1575043694:795019..795125TCONS_00001827-exon-sc0000012-1575043694:795019..795125Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1491911889:795528..795564TCONS_00001827-exon-sc0000012-1491911889:795528..795564Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1510915933:795528..795564TCONS_00001827-exon-sc0000012-1510915933:795528..795564Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1575043694:795528..795564TCONS_00001827-exon-sc0000012-1575043694:795528..795564Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1491911889:796110..796310TCONS_00001827-exon-sc0000012-1491911889:796110..796310Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1510915933:796110..796310TCONS_00001827-exon-sc0000012-1510915933:796110..796310Clytia hemisphaericaexon
TCONS_00001827-exon-sc0000012-1575043694:796110..796310TCONS_00001827-exon-sc0000012-1575043694:796110..796310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:790871..796310 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.683714	0.587505	0.288272	0.283017	0	0	2.48098	0.000915567	3.7545e-08	0.527932	1.97564	2.2798	3.87488	1.40833e-06	6.79997	15.2166	9.49119	9.9782	0	0.223404	3.12855	8.72684	7.96978	3.76488	0	0	0	0.0393526	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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