TCONS_00001802 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001802
Unique Name	TCONS_00001802
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2272

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000012:656857..663390+

transcript sequence

>TCONS_00001802 ID=TCONS_00001802|Name=TCONS_00001802|organism=Clytia hemisphaerica|type=transcript|length=2272bp
gtcaatttcgagataaaagtcaaatttgaatttgaacgCTTATGCGAAGA
CCCTCGTTTTCTGATAAGGCAGAAGAACGCTTGGCcatgacttgaaaaga
CTACCATCTTGAAAGCTAAGGGGAATCGTACGGGACCggcaaaaaccaaa
acaaagattgcgaattttttttcgaaatctgacaTATATGATTGATGCGC
TCCTACAACTTTGAAATCAAATAGCACTGGTCATTCAACAAGGAAAGAGG
CACAGTCAAGTGTAAGCTCTCGATGGCAAGTAAAAAATCTAATACCAGta
gTTTCTCTGCTAAGTTGATTAATGGAGGCATAGCTGGTTCAATTGGTACA
TGTTGTGTTTTCCCACTTGACTTAGCCAAAACAAGAATTCAAGATCAAAG
AACATTCTCAAAAACAACTGGACAGGCTGCGACAAGACTCTATAAAAATG
TCTTCCATTGCATGTACATTGTTGGAAAAACTGAGGGAGTCAGAGGGCTC
TACAAAGGGCTTGGTATTAACTTATTCCTTGTAAATCCTGAGAAGGCAAT
TAAATTAGCTGTGAATGACCAATGCAGACAACACCTGGGATCAAAACAAG
GATCTATGTTACCTTTACGGTATGAAGCTATGGCAGGTGGCTTAGCTGGA
ATGTGCCAGATTTTTATAACAACACCAATGGAATTCTTAAAAATACAAAT
GCAAGTTGCTGGACGAAATGCTGAGTCTGCACAAACAAGTGCTGTCAAGG
TAGCAGTTAATCTTATGCGACAAAGAGGAATTGCTGGTATTTACAAAGGA
ACTGGTGCTACATTTATAAGGGATGTACCATTCTCCTGCGTCTATTTCCC
ATTATTCTCATACTTAAACTCACTGGGATACAAAGATGGTCGAAAGCCAC
ATCCTGTTCATTCACTGGCTTCAGGGTTAGGATCTGGCGTATTTAGCGCT
GTCCTTGTTACTCCTATGGATGTTGTCAAAACGCGATTACAAGTCTTGAA
ACGTATGGAAGGAGAACCTATCTATAACGGCTGGTCCGATGCTGTCAGTA
AAATATACAGAAACGAGGGTCTATCTGCATTCTTCAAAGGAGCTATCACA
CGTGCCATTGTGGTGGCGCCCTTGTTTGGAATAGCTCAAATGGTTTATTT
TGTTGGTTTTGCAGAGACTATTATGGAGCGTGCATCTCAACAAAGgatca
aagatttttcttgaaatcgaaaaatatttatccccTCGAAAGAATTCCTA
AACGACTCAAATTTCTTTAACTATAGTTCTAAAAACGAGAATCTTCTGCC
CCACAATCTTCAAAGGATAACtaatttctttttagtttaTGTTACGTCTC
GACAGTTgtcaaattaaaaatgaaatgatCGGTACCTTCATGCGAGAGCA
TTGTTGATTTACAATCCCCTCGAAGAGAAACCCTTagttgtttttaatca
attactttttatattttaatatGTCATATACTTTAAGTAGATAAAATCGC
TCACGACAATGTTAAAAATAATAgagtttttcataaaaatattgtTAATA
TATTATAGAAAATTACAATCTATAAAGGCTTTGTATCATaagaattcaaa
atatttttactttatcgTTTtacatatacagattttttacGTAAAGGTTG
ATTAATggtgtgtttttttcttttttttcttttgtataatttttttagta
gtgtataatatttatttggcattttattttttaaacacaCCATTAGCAAC
TCTCGGAAATGAtcataattagaaatttctgtAAGGATTATAataagttt
tgacattttctcgtaACGCTTACCAGGAAATCaaggaattttcaaaatga
gattcAAAAATTATTCTGGTTTTCTACTAGTGAACAATTATTGCTCGTTC
GTAATGCTTTAAGTGAATAGCATTACTGGTAAGCTTTTGGAGCTCACACG
ATTGAAAGCTTTTACTCTGAGAATTCGCCACCCACGCCGAgagtaaaaat
attgaaaagtgaAACAGATTTATTTGGTCAGCTTAACACTGTCAAGATTC
AAAATTGACCCCGTCTGTTTAAATAGATTTTGAGATTCCTTTCAAAACAT
ACCTCGGATTGCAAAACTATGAAAATTTAGTgttattttgattgtttcaa
tagACGATGGAAATCAACattttttctattattttatcACATAttgcaaa
atttgttttatactGAATTTGTTTAATGAACTATCCCAATTTTTTGGTAc
agtatttgatttttttaagcca

Run BLAST on NCBI

transcript from alignment at sc0000012:656857..663390+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001802 ID=TCONS_00001802|Name=TCONS_00001802|organism=Clytia hemisphaerica|type=transcript|length=6534bp|location=Sequence derived from alignment at sc0000012:656857..663390+ (Clytia hemisphaerica)
gtcaatttcgagataaaagtcaaatttgaatttgaacgCTTATGCGAAGA
CCCTCGTTTTCTGATAAGGCAGAAGAACGCTTGGCcatgacttgaaaagg
tttgttACGTACATGGAGACACGAGTTTGGCCTAAAAgtctattttattg
tttttatcgtTTTTCATGTCCGTTGCTTTTGTCTCCTGCGTACTCAGTAC
TCATAAAATTTCCGGACCATCATTTAGAAATGTTAAAGGGAATACTGTGA
TTTACGATGACCGTACATATTAAACCAATTAACGCTTAGAAGCTGCAAAG
TTAGCaattaattaaaaatgaaataaaaagtcCGTGATTTATTATGATAT
CTcctatttaaatttttttagttaGCTTTTTATCTTTCTATCAAGTTTGA
TAACACCGCGTTTTTCTTGTGTTTGTATATGTTGCAGGGGAAGTTTCTCT
CTACATCGAGTAGTTCGTGGGTATTTCCCTGTGGTTGGGTGCAACATTGC
TTAAAAACCACATGTCATTTActgacaattaaaaaaaaaaggatatAGGA
GCAAAGTACACAGTGACTGTGATTTGATGAGCgattataaaattatcatt
ttgcTCCGTATATTGTGTTGCTTTTATTTCAATGTAACCGTCTCCtctgt
caatcaaaaaactttcgagAAACAATTAAAATTTCATTATATTGTTGCCA
TCCTGTAGCGCGGTGATTTTTGAATCGACAATGTTTGTATTCagactttc
actttcgttttgattcagaattttttttttgtttatatagaCTACCATCT
TGAAAGCTAAGGGGAATCGTACGGGACCggcaaaaaccaaaacaaagatt
gcgaattttttttcgaaatctgacaTATATGATTGATGCGCTCCTACAAC
TTTGAAATCAAATAGCACTGGTCATTCAACAAGGAAAGAGGCACAGTCAA
GTGTAAGCTCTCGATGGCAAGTAAAAAATCTAATACCAGGTATAATTTTC
CTTAATATTTTTCTTACCCAACGTTGCTTTACCTTTTGTATGTAATGAga
ggatttttttcagaaaactgacaattttgaaaacaagattAACATTTTAT
GTAACAACATAAACATCTCTGCCATCCCATCCGAATTTATGTGTATTTTT
TATGAATCatatgaaaaagtatttttctgaatgcaatttgatttttcatt
caGCTTCCAGCCGTTGTTCTGGTTAATTTGCATATATATATANAGGATAT
AGGAGCAAAGTACACAGTGACTGTGATTTGATGAGCgattataaaattat
cattttgcTCCGTATATTGTGTTGCTTTTATTTCAATGTAACCGTCTCCt
ctgtcaatcaaaaaactttcgagAAACAATTAAAATTTCATTATATTGTT
GCCATCCTGTAGCGCGGTGATTTTTGAATCGACAATGTTTGTATTCagac
tttcactttcgttttgattcagaattttttttttgtttatatagaCTACC
ATCTTGAAAGCTAAGGGGAATCGTACGGGACCggcaaaaaccaaaacaaa
gattgcgaattttttttcgaaatctgacaTATATGATTGATGCGCTCCTA
CAACTTTGAAATCAAATAGCACTGGTCATTCAACAAGGAAAGAGGCACAG
TCAAGTGTAAGCTCTCGATGGCAAGTAAAAAATCTAATACCAGGTATAAT
TTTCCTTAATATTTTTCTTACCCAACGTTGCTTTACCTTTTGTATGTAAT
GAgaggatttttttcagaaaactgacaattttgaaaacaagattAACATT
TTATGTAACATCATAAACATCTCTGCCATCCCATCCGAATttatgtgtat
tttttaatgaatcatatgaaaaagtatttttctgaatgCAATTTGGTTTT
TCATTCAGCTTCCAGCCGTTGTTCTGGTTAATTTGCATATATATATAATT
CTTCGATTATTAAAATGGGGAGATTAAATGAGATTAAATGCTTATGAACA
TTGTGAAAACCAGtagtttttgtcaaaaattctagatttttgtcaaaacc
cttttgaaaatgaaataaattagtTGAAAAAGAGAATcccacaaaaatta
aattacctttgaaaaaaaagtgccTTGTGAAAATTTGTGGCTtcccaagc
gatttaaagtacctgaaaatcagaCCTCCAGATTTGGTCTGGTATTACGA
GCGGTCTAGTAGCGGTCAAATTTTTAGACCGGTCCTGACTGCTCGTTGGA
CCGGTCCAGGCCATTCGTTAGACCAGTCCAGGTCGCTAGTTAATGATTTT
TAGTAACGATTACATTAAAAAATTGTTGTAGAAGGATGTCGACCGGGCGA
TCGGGGCCAGTCTGAGACCGGATGATTGGGGCCGGTCTGAGACCAGACAC
TTCGCAGCGGCACCTAAATTAACTAGACTcataccgtgagagtgggtaac
ttgcatcagtggaggctaacatgcatagccctaaaatgaatgacctggct
ggtcattaaaataaactatattcaGCTCTGCTTGCAGCTCTActctacca
tttttgttttgatttaacttgtattttaatgaccagacgggtcatttatt
tgagggctatgcatgttagcctcaactgatgcaagttacccactctcacg
gtacCTTTTAGTAAATTAAAGATCAGTCCTATATTCAtgtactttaaatc
gcttggggagtcacaattATCCATTTGACAGTAATGCAGGgctaaaattt
tgtgaaatcaCACTATTTCGCGAAATTAATTcgttttcatttttaacatt
AATTTATTCTACATTTATCAtctaattttcattaatttttttatattttt
agtagTTTCTCTGCTAAGTTGATTAATGGAGGCATAGCTGGTTCAATTGG
TACATGTTGTGTTTTCCCACTTGACTTAGCCAAAACAAGAATTCAAGATC
AAAGAACATTCTCAAAAACAACTGGACAGGCTGCGACAAGACTCTATAAA
AATGTGTAAGTGATTTTTCTCATTGTTTCTTTTCTACGTATGAAAAATTA
GTTTTGAGTCATAAATGCTCCCATTTTCTAGTTTAttctccaaaaataaa
aataacggacaaaAATAATTTCCTTATTTTTAGCTTCCATTGCATGTACA
TTGTTGGAAAAACTGAGGGAGTCAGAGGGCTCTACAAAGGTATATTTATA
TTCATATTTATATTTAATCCATTTTGAATTATAAATGTCGTAGACAATGG
GGTTACGATAACAGAACGTTCCCCTCTATCTATGGAAAGAGAACCTGGAA
AAActttgtcaaaattttaaacataactttttttctatcatTTTCAGGGC
TTGGTATTAACTTATTCCTTGTAAATCCTGAGAAGGCAATTAAATTAGCT
GTGAATGACCAATGCAGACAACACCTGGGATCAAAACAAGGGTaagaaaa
atgactttttctatACTTTCATTTGAAAGTCTTATTTCCATCAGAATGAA
ACATAAatttcatcagattttaaaacagttttcattatatttgattTTTG
TAGATCTATGTTACCTTTACGGTATGAAGCTATGGCAGGTGGCTTAGCTG
GAATGTGCCAGGTAATAATTCTAAAAACTAaatactttctttaaaaaaat
aaacacttaatttattttttattttttaacaaatttcttTGTCCTTCTTT
TGCTCttacaatgtttttttttaattttcttatagATTTTTATAACAACA
CCAATGGAATTCTTAAAAATACAAATGCAAGTTGCTGGACGAAGtaagga
aaaattatttttaatgggTGCTACCAGGATTTGTAGCTGttctttgaatt
ttgatttcctTCACAATATCTACTCTAAAAAGTCGATCAGCATGGGTGAG
AGATTGCATTAAGGAAAAATTATGAATGAGATCCTGACGACTAGAATGCA
TGGGATtataaattgttaaaaaaagtagtcttttacatttttaaataaat
ttataaggAGGCACATTGACAGATCTCATGATGGTCAGTACTCTATTAAT
AATGCAGTAGCATCagtgttgttttgatttagaAATTCTCACCCACCTTA
TCAATTAttgattttttcttaatttattttctcaatacattttttaagaa
tttatctttttcttaaaacaatAGATGCTGAGTCTGCACAAACAAGTGCT
GTCAAGGTAGCAGTTAATCTTATGCGACAAAGAGGAATTGCTGGTATTTA
CAAAGGAACTGGTGCTACATTTATAAGGTTGCTTGTTATTCCTTTGACAT
TAtgactttttcataatttttagatcgcagctttccgaaaaaaaatgtgC
ATTTTGAGGAACAGCTAAAGATGAGCTCCCCTTTAATTGATTGAAATCAT
TATGCCATAAACATCCTTTGTCTTGAACCATTACCCGATTACATAGAGAT
TGCAACTCTGCAATTACACTTCCTTTTAATTCTTAAATAGACGTCATTTA
CAGACGATTACATTGTAACAATTTGAAATGTTTCTGAAATCATTCAAAGG
ctattacaatataattttgataTCTTTCAATTTGTAATACTCTTGTTATA
GAGGTGCGCAACTGAAATACCTTTAAAATCATTCGAAAAATTATTCCCAt
cttttttgacgaattttttatttcatttctttataGGGATGTACCATTCT
CCTGCGTCTATTTCCCATTATTCTCATACTTAAACTCACTGGTGAGTAAA
AAGTTGTACTTtgactttgtttttgtttatcttggAACACAATACAATCA
AGTCTTGTTCTACAGGAATCCTAAACTCATTCAAAACCGGTTTTTGAATG
CAAAGAATACAGAGTGCAGAGCACCTAAGTTAGCTGTCATGTTGTTGTGT
ACATAACTTTGAGATTTATTCCTTCCTGTCTCGTAACTTccttatttgtt
tttttcatgtAACTTTTTGCTCATGTGGTTTAAGAGTCGCTTACAATCAC
AGTCATAAATATCAACACTTAGAAACCTAAACTTTGTACCTAGCTAAGAG
ATATTACTCTACTTTTTTTTCAGGGATACAAAGATGGTCGAAAGCCACAT
CCTGTTCATTCACTGGCTTCAGGGTTAGGATCTGGCGTATTTAGCGCTGT
CCTTGTTACTCCTATGGATGTTGTCAAAACGCGATTACAAGTCTTGAAAC
GTATGGAAGGAGAACCTATCTATAACGGCTGGTCCGATGCTGTCAGTAAA
ATATACAGAAACGAGGGTCTATCTGCATTCTTCAAAGGAGCTATCACACG
TGCCATTGTGGTGGCGCCCTTGTTTGGAATAGCTCAAATGGTTTATTTTG
TTGGTTTTGCAGAGACTATTATGGAGCGTGCATCTCAACAAAGgatcaaa
gatttttcttgaaatcgaaaaatatttatccccTCGAAAGAATTCCTAAA
CGACTCAAATTTCTTTAACTATAGTTCTAAAAACGAGAATCTTCTGCCCC
ACAATCTTCAAAGGATAACtaatttctttttagtttaTGTTACGTCTCGA
CAGTTgtcaaattaaaaatgaaatgatCGGTACCTTCATGCGAGAGCATT
GTTGATTTACAATCCCCTCGAAGAGAAACCCTTagttgtttttaatcaat
tactttttatattttaatatGTCATATACTTTAAGTAGATAAAATCGCTC
ACGACAATGTTAAAAATAATAgagtttttcataaaaatattgtTAATATA
TTATAGAAAATTACAATCTATAAAGGCTTTGTATCATaagaattcaaaat
atttttactttatcgTTTtacatatacagattttttacGTAAAGGTTGAT
TAATggtgtgtttttttcttttttttcttttgtataatttttttagtagt
gtataatatttatttggcattttattttttaaacacaCCATTAGCAACTC
TCGGAAATGAtcataattagaaatttctgtAAGGATTATAataagttttg
acattttctcgtaACGCTTACCAGGAAATCaaggaattttcaaaatgaga
ttcAAAAATTATTCTGGTTTTCTACTAGTGAACAATTATTGCTCGTTCGT
AATGCTTTAAGTGAATAGCATTACTGGTAAGCTTTTGGAGCTCACACGAT
TGAAAGCTTTTACTCTGAGAATTCGCCACCCACGCCGAgagtaaaaatat
tgaaaagtgaAACAGATTTATTTGGTCAGCTTAACACTGTCAAGATTCAA
AATTGACCCCGTCTGTTTAAATAGATTTTGAGATTCCTTTCAAAACATAC
CTCGGATTGCAAAACTATGAAAATTTAGTgttattttgattgtttcaata
gACGATGGAAATCAACATTTTTTCTANACTATGAaaatttagtgtttttt
ttattgtttcaatagACGATGGAAATCAacattttttctattattttatc
ACATAttgcaaaatttgttttatactGAATTTGTTTAATGAACTATCCCA
ATTTTTTGGTAcagtatttgatttttttaagcca

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000965	XLOC_000965	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000012	supercontig	sc0000012:656857..663390 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.82815	2.08822	0.47891	2.54008	35.871	24.8017	16.6327	13.0255	0.860691	0.800788	0	0.000377626	10.2066	9.03081	6.23015	7.78342	1.7614	3.17963	6.79927	7.3643	8.71811	7.73101	3.79321	8.3857	9.33307	10.4632	5.6131	4.88033	12.5053	6.36602

Blast

[Close]

BLAST of TCONS_00001802 vs. Swiss-Prot (Human)
Match: GHC2 (Mitochondrial glutamate carrier 2 OS=Homo sapiens GN=SLC25A18 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.050e-84
Identity = 150/316 (47.47%), Postives = 200/316 (63.29%), Query Frame = 3

Query:  300 SFSAKLINGGIAGSIGTCCVFPLDLAKTRIQDQRTFSKTTGQAATRLYKNVFHCMYIVGKTEGVRGLYKGLGINLFLVNPEKAIKLAVNDQCRQHLGSKQGSMLPLRYEAMAGGLAGMCQIFITTPMEFLKIQMQVAGRNAESAQ----------------------TSAVKVAVNLMRQRGIAGIYKGTGATFIRDVPFSCVYFPLFSYLNSLGYKD-GRKPHPVHSLASGLGSGVFSAVLVTPMDVVKTRLQVLKRMEGEPIYNGWSDAVSKIYRNEGLSAFFKGAITRAIVVAPLFGIAQMVYFVGFAETIME 1178
            S +AKLINGG+AG +G  CVFP+DLAKTR+Q+Q       G+A   +YK +  C+    + EG  G+Y+G  +NL LV PEKAIKLA ND  R+ L  + G    L+ E +AG  AGMCQ+ +T PME LKIQ+Q AGR A   Q                       SA  +A  L+R +G+AG+Y+G GAT +RD+PFS +YFPLF+ LN+LG+ +   K    HS  SG  +G  +AV VTP+DV+KTR+Q LK+  GE +Y+G +D   K++  EG SAF KGA  RA+V+APLFGIAQ VYF+G  E I++
Sbjct:    7 SITAKLINGGVAGLVGVTCVFPIDLAKTRLQNQH------GKA---MYKGMIDCLMKTARAEGFFGMYRGAAVNLTLVTPEKAIKLAANDFFRRLL-MEDGMQRNLKMEMLAGCGAGMCQVVVTCPMEMLKIQLQDAGRLAVHHQGSASAPSTSRSYTTGSASTHRRPSATLIAWELLRTQGLAGLYRGLGATLLRDIPFSIIYFPLFANLNNLGFNELAGKASFAHSFVSGCVAGSIAAVAVTPLDVLKTRIQTLKKGLGEDMYSGITDCARKLWIQEGPSAFMKGAGCRALVIAPLFGIAQGVYFIGIGERILK 312

The following BLAST results are available for this feature:

BLAST of TCONS_00001802 vs. Swiss-Prot (Human)

BLAST of TCONS_00001802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GHC2	1.050e-84	47.47	Mitochondrial glutamate carrier 2 OS=Homo sapiens ...	[more]

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TCONS_00001802 (transcript) - C. hemisphaerica