TCONS_00001801 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001801
Unique Name	TCONS_00001801
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2281

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000012:656252..663390+

transcript sequence

>TCONS_00001801 ID=TCONS_00001801|Name=TCONS_00001801|organism=Clytia hemisphaerica|type=transcript|length=2281bp
GTTTTCTGATAAGGCAGAAGAACGCTTGGCcatgacttgaaaagaCTACC
ATCTTGAAAGCTAAGGGGAATCGTACGGGACCggcaaaaaccaaaacaaa
gattgcgaattttttttcgaaatctgacaTATATGATTGATGCGCTCCTA
CAACTTTGAAATCAAATAGCACTGGTCATTCAACAAGGAAAGAGGCACAG
TCAAGTGTAAGCTCTCGATGGCAAGTAAAAAATCTAATACCAGtagTTTC
TCTGCTAAGTTGATTAATGGAGGCATAGCTGGTTCAATTGGTACATGTTG
TGTTTTCCCACTTGACTTAGCCAAAACAAGAATTCAAGATCAAAGAACAT
TCTCAAAAACAACTGGACAGGCTGCGACAAGACTCTATAAAAATGTCTTC
CATTGCATGTACATTGTTGGAAAAACTGAGGGAGTCAGAGGGCTCTACAA
AGGGCTTGGTATTAACTTATTCCTTGTAAATCCTGAGAAGGCAATTAAAT
TAGCTGTGAATGACCAATGCAGACAACACCTGGGATCAAAACAAGGATCT
ATGTTACCTTTACGGTATGAAGCTATGGCAGGTGGCTTAGCTGGAATGTG
CCAGATTTTTATAACAACACCAATGGAATTCTTAAAAATACAAATGCAAG
TTGCTGGACGAAATGCTGAGTCTGCACAAACAAGTGCTGTCAAGGTAGCA
GTTAATCTTATGCGACAAAGAGGAATTGCTGGTATTTACAAAGGAACTGG
TGCTACATTTATAAGGGATGTACCATTCTCCTGCGTCTATTTCCCATTAT
TCTCATACTTAAACTCACTGGGATACAAAGATGGTCGAAAGCCACATCCT
GTTCATTCACTGGCTTCAGGGTTAGGATCTGGCGTATTTAGCGCTGTCCT
TGTTACTCCTATGGATGTTGTCAAAACGCGATTACAAGTCTTGAAACGTA
TGGAAGGAGAACCTATCTATAACGGCTGGTCCGATGCTGTCAGTAAAATA
TACAGAAACGAGGGTCTATCTGCATTCTTCAAAGGAGCTATCACACGTGC
CATTGTGGTGGCGCCCTTGTTTGGAATAGCTCAAATGGTTTATTTTGTTG
GTTTTGCAGAGACTATTATGGAGCGTGCATCTCAACAAAGgatcaaagat
ttttcttgaaatcgaaaaatatttatccccTCGAAAGAATTCCTAAACGA
CTCAAATTTCTTTAACTATAGTTCTAAAAACGAGAATCTTCTGCCCCACA
ATCTTCAAAGGATAACtaatttctttttagtttaTGTTACGTCTCGACAG
TTgtcaaattaaaaatgaaatgatCGGTACCTTCATGCGAGAGCATTGTT
GATTTACAATCCCCTCGAAGAGAAACCCTTagttgtttttaatcaattac
tttttatattttaatatGTCATATACTTTAAGTAGATAAAATCGCTCACG
ACAATGTTAAAAATAATAgagtttttcataaaaatattgtTAATATATTA
TAGAAAATTACAATCTATAAAGGCTTTGTATCATaagaattcaaaatatt
tttactttatcgTTTtacatatacagattttttacGTAAAGGTTGATTAA
Tggtgtgtttttttcttttttttcttttgtataatttttttagtagtgta
taatatttatttggcattttattttttaaacacaCCATTAGCAACTCTCG
GAAATGAtcataattagaaatttctgtAAGGATTATAataagttttgaca
ttttctcgtaACGCTTACCAGGAAATCaaggaattttcaaaatgagattc
AAAAATTATTCTGGTTTTCTACTAGTGAACAATTATTGCTCGTTCGTAAT
GCTTTAAGTGAATAGCATTACTGGTAAGCTTTTGGAGCTCACACGATTGA
AAGCTTTTACTCTGAGAATTCGCCACCCACGCCGAgagtaaaaatattga
aaagtgaAACAGATTTATTTGGTCAGCTTAACACTGTCAAGATTCAAAAT
TGACCCCGTCTGTTTAAATAGATTTTGAGATTCCTTTCAAAACATACCTC
GGATTGCAAAACTATGAAAATTTAGTgttattttgattgtttcaatagAC
GATGGAAATCAACATTTTTTCTANACTATGAaaatttagtgtttttttta
ttgtttcaatagACGATGGAAATCAacattttttctattattttatcACA
TAttgcaaaatttgttttatactGAATTTGTTTAATGAACTATCCCAATT
TTTTGGTAcagtatttgatttttttaagcca

Run BLAST on NCBI

transcript from alignment at sc0000012:656252..663390+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001801 ID=TCONS_00001801|Name=TCONS_00001801|organism=Clytia hemisphaerica|type=transcript|length=7139bp|location=Sequence derived from alignment at sc0000012:656252..663390+ (Clytia hemisphaerica)
GTTTTCTGATAAGGCAGAAGAACGCTTGGCcatgacttgaaaaggtttgt
tACGTACATGGAGACACGAGTTTGGCCTAAAAgtctattttattgttttt
atcgtTTTTCATGTCCGTTGCTTTTGTCTCCTGCGTACTCAGTACTCATA
AAATTTCCGGACCATCATTTAGAAATGTTAAAGGGAATACTGTGATTTAC
GATGACCGTACATATTAAACCAATTAACGCTTAGAAGCTGNTAGACATTG
AAAAAACGTAATTGCTCCTTTGAACTTTATTTGGCGGCCAGGATATCAga
taaaaaagactttccagAGTCCAGAGTTTTTTTTGCAAGAAATTGTGCAC
ACGCCTATTCTGGGTGTTGTGGCTCCTTCGTTTATTGTACACCAGTTTGT
ACACCCATTCACAGCGGTTTACTTGGCAGGTGAACGAACGAATGTTCGTC
CAGGTCATGTGTGAGGTCAAATGGGTAGTCAGTCCTCCAAGGTGCTGATG
GTTGCTCATTAAATGTGTAGTTGCGAATATGggcctaaaaatatttttgg
gattttttccgCTTAAACTAATTTAGACTATATAAtacgcgaaaaaaaat
ttgacgtcaatttcgagataaaagtcaaatttgaatttgaacgCTTATGC
GAAGACCCTCGTTTTCTGATAAGGCAGAAGAACGCTTGGCcatgacttga
aaaggtttgttACGTACATGGAGACACGAGTTTGGCCTAAAAgtctattt
tattgtttttatcgtTTTTCATGTCCGTTGCTTTTGTCTCCTGCGTACTC
AGTACTCATAAAATTTCCGGACCATCATTTAGAAATGTTAAAGGGAATAC
TGTGATTTACGATGACCGTACATATTAAACCAATTAACGCTTAGAAGCTG
CAAAGTTAGCaattaattaaaaatgaaataaaaagtcCGTGATTTATTAT
GATATCTcctatttaaatttttttagttaGCTTTTTATCTTTCTATCAAG
TTTGATAACACCGCGTTTTTCTTGTGTTTGTATATGTTGCAGGGGAAGTT
TCTCTCTACATCGAGTAGTTCGTGGGTATTTCCCTGTGGTTGGGTGCAAC
ATTGCTTAAAAACCACATGTCATTTActgacaattaaaaaaaaaaggata
tAGGAGCAAAGTACACAGTGACTGTGATTTGATGAGCgattataaaatta
tcattttgcTCCGTATATTGTGTTGCTTTTATTTCAATGTAACCGTCTCC
tctgtcaatcaaaaaactttcgagAAACAATTAAAATTTCATTATATTGT
TGCCATCCTGTAGCGCGGTGATTTTTGAATCGACAATGTTTGTATTCaga
ctttcactttcgttttgattcagaattttttttttgtttatatagaCTAC
CATCTTGAAAGCTAAGGGGAATCGTACGGGACCggcaaaaaccaaaacaa
agattgcgaattttttttcgaaatctgacaTATATGATTGATGCGCTCCT
ACAACTTTGAAATCAAATAGCACTGGTCATTCAACAAGGAAAGAGGCACA
GTCAAGTGTAAGCTCTCGATGGCAAGTAAAAAATCTAATACCAGGTATAA
TTTTCCTTAATATTTTTCTTACCCAACGTTGCTTTACCTTTTGTATGTAA
TGAgaggatttttttcagaaaactgacaattttgaaaacaagattAACAT
TTTATGTAACAACATAAACATCTCTGCCATCCCATCCGAATTTATGTGTA
TTTTTTATGAATCatatgaaaaagtatttttctgaatgcaatttgatttt
tcattcaGCTTCCAGCCGTTGTTCTGGTTAATTTGCATATATATATANAG
GATATAGGAGCAAAGTACACAGTGACTGTGATTTGATGAGCgattataaa
attatcattttgcTCCGTATATTGTGTTGCTTTTATTTCAATGTAACCGT
CTCCtctgtcaatcaaaaaactttcgagAAACAATTAAAATTTCATTATA
TTGTTGCCATCCTGTAGCGCGGTGATTTTTGAATCGACAATGTTTGTATT
Cagactttcactttcgttttgattcagaattttttttttgtttatataga
CTACCATCTTGAAAGCTAAGGGGAATCGTACGGGACCggcaaaaaccaaa
acaaagattgcgaattttttttcgaaatctgacaTATATGATTGATGCGC
TCCTACAACTTTGAAATCAAATAGCACTGGTCATTCAACAAGGAAAGAGG
CACAGTCAAGTGTAAGCTCTCGATGGCAAGTAAAAAATCTAATACCAGGT
ATAATTTTCCTTAATATTTTTCTTACCCAACGTTGCTTTACCTTTTGTAT
GTAATGAgaggatttttttcagaaaactgacaattttgaaaacaagattA
ACATTTTATGTAACATCATAAACATCTCTGCCATCCCATCCGAATttatg
tgtattttttaatgaatcatatgaaaaagtatttttctgaatgCAATTTG
GTTTTTCATTCAGCTTCCAGCCGTTGTTCTGGTTAATTTGCATATATATA
TAATTCTTCGATTATTAAAATGGGGAGATTAAATGAGATTAAATGCTTAT
GAACATTGTGAAAACCAGtagtttttgtcaaaaattctagatttttgtca
aaacccttttgaaaatgaaataaattagtTGAAAAAGAGAATcccacaaa
aattaaattacctttgaaaaaaaagtgccTTGTGAAAATTTGTGGCTtcc
caagcgatttaaagtacctgaaaatcagaCCTCCAGATTTGGTCTGGTAT
TACGAGCGGTCTAGTAGCGGTCAAATTTTTAGACCGGTCCTGACTGCTCG
TTGGACCGGTCCAGGCCATTCGTTAGACCAGTCCAGGTCGCTAGTTAATG
ATTTTTAGTAACGATTACATTAAAAAATTGTTGTAGAAGGATGTCGACCG
GGCGATCGGGGCCAGTCTGAGACCGGATGATTGGGGCCGGTCTGAGACCA
GACACTTCGCAGCGGCACCTAAATTAACTAGACTcataccgtgagagtgg
gtaacttgcatcagtggaggctaacatgcatagccctaaaatgaatgacc
tggctggtcattaaaataaactatattcaGCTCTGCTTGCAGCTCTActc
taccatttttgttttgatttaacttgtattttaatgaccagacgggtcat
ttatttgagggctatgcatgttagcctcaactgatgcaagttacccactc
tcacggtacCTTTTAGTAAATTAAAGATCAGTCCTATATTCAtgtacttt
aaatcgcttggggagtcacaattATCCATTTGACAGTAATGCAGGgctaa
aattttgtgaaatcaCACTATTTCGCGAAATTAATTcgttttcattttta
acattAATTTATTCTACATTTATCAtctaattttcattaatttttttata
tttttagtagTTTCTCTGCTAAGTTGATTAATGGAGGCATAGCTGGTTCA
ATTGGTACATGTTGTGTTTTCCCACTTGACTTAGCCAAAACAAGAATTCA
AGATCAAAGAACATTCTCAAAAACAACTGGACAGGCTGCGACAAGACTCT
ATAAAAATGTGTAAGTGATTTTTCTCATTGTTTCTTTTCTACGTATGAAA
AATTAGTTTTGAGTCATAAATGCTCCCATTTTCTAGTTTAttctccaaaa
ataaaaataacggacaaaAATAATTTCCTTATTTTTAGCTTCCATTGCAT
GTACATTGTTGGAAAAACTGAGGGAGTCAGAGGGCTCTACAAAGGTATAT
TTATATTCATATTTATATTTAATCCATTTTGAATTATAAATGTCGTAGAC
AATGGGGTTACGATAACAGAACGTTCCCCTCTATCTATGGAAAGAGAACC
TGGAAAAActttgtcaaaattttaaacataactttttttctatcatTTTC
AGGGCTTGGTATTAACTTATTCCTTGTAAATCCTGAGAAGGCAATTAAAT
TAGCTGTGAATGACCAATGCAGACAACACCTGGGATCAAAACAAGGGTaa
gaaaaatgactttttctatACTTTCATTTGAAAGTCTTATTTCCATCAGA
ATGAAACATAAatttcatcagattttaaaacagttttcattatatttgat
tTTTGTAGATCTATGTTACCTTTACGGTATGAAGCTATGGCAGGTGGCTT
AGCTGGAATGTGCCAGGTAATAATTCTAAAAACTAaatactttctttaaa
aaaataaacacttaatttattttttattttttaacaaatttcttTGTCCT
TCTTTTGCTCttacaatgtttttttttaattttcttatagATTTTTATAA
CAACACCAATGGAATTCTTAAAAATACAAATGCAAGTTGCTGGACGAAGt
aaggaaaaattatttttaatgggTGCTACCAGGATTTGTAGCTGttcttt
gaattttgatttcctTCACAATATCTACTCTAAAAAGTCGATCAGCATGG
GTGAGAGATTGCATTAAGGAAAAATTATGAATGAGATCCTGACGACTAGA
ATGCATGGGATtataaattgttaaaaaaagtagtcttttacatttttaaa
taaatttataaggAGGCACATTGACAGATCTCATGATGGTCAGTACTCTA
TTAATAATGCAGTAGCATCagtgttgttttgatttagaAATTCTCACCCA
CCTTATCAATTAttgattttttcttaatttattttctcaatacatttttt
aagaatttatctttttcttaaaacaatAGATGCTGAGTCTGCACAAACAA
GTGCTGTCAAGGTAGCAGTTAATCTTATGCGACAAAGAGGAATTGCTGGT
ATTTACAAAGGAACTGGTGCTACATTTATAAGGTTGCTTGTTATTCCTTT
GACATTAtgactttttcataatttttagatcgcagctttccgaaaaaaaa
tgtgCATTTTGAGGAACAGCTAAAGATGAGCTCCCCTTTAATTGATTGAA
ATCATTATGCCATAAACATCCTTTGTCTTGAACCATTACCCGATTACATA
GAGATTGCAACTCTGCAATTACACTTCCTTTTAATTCTTAAATAGACGTC
ATTTACAGACGATTACATTGTAACAATTTGAAATGTTTCTGAAATCATTC
AAAGGctattacaatataattttgataTCTTTCAATTTGTAATACTCTTG
TTATAGAGGTGCGCAACTGAAATACCTTTAAAATCATTCGAAAAATTATT
CCCAtcttttttgacgaattttttatttcatttctttataGGGATGTACC
ATTCTCCTGCGTCTATTTCCCATTATTCTCATACTTAAACTCACTGGTGA
GTAAAAAGTTGTACTTtgactttgtttttgtttatcttggAACACAATAC
AATCAAGTCTTGTTCTACAGGAATCCTAAACTCATTCAAAACCGGTTTTT
GAATGCAAAGAATACAGAGTGCAGAGCACCTAAGTTAGCTGTCATGTTGT
TGTGTACATAACTTTGAGATTTATTCCTTCCTGTCTCGTAACTTccttat
ttgtttttttcatgtAACTTTTTGCTCATGTGGTTTAAGAGTCGCTTACA
ATCACAGTCATAAATATCAACACTTAGAAACCTAAACTTTGTACCTAGCT
AAGAGATATTACTCTACTTTTTTTTCAGGGATACAAAGATGGTCGAAAGC
CACATCCTGTTCATTCACTGGCTTCAGGGTTAGGATCTGGCGTATTTAGC
GCTGTCCTTGTTACTCCTATGGATGTTGTCAAAACGCGATTACAAGTCTT
GAAACGTATGGAAGGAGAACCTATCTATAACGGCTGGTCCGATGCTGTCA
GTAAAATATACAGAAACGAGGGTCTATCTGCATTCTTCAAAGGAGCTATC
ACACGTGCCATTGTGGTGGCGCCCTTGTTTGGAATAGCTCAAATGGTTTA
TTTTGTTGGTTTTGCAGAGACTATTATGGAGCGTGCATCTCAACAAAGga
tcaaagatttttcttgaaatcgaaaaatatttatccccTCGAAAGAATTC
CTAAACGACTCAAATTTCTTTAACTATAGTTCTAAAAACGAGAATCTTCT
GCCCCACAATCTTCAAAGGATAACtaatttctttttagtttaTGTTACGT
CTCGACAGTTgtcaaattaaaaatgaaatgatCGGTACCTTCATGCGAGA
GCATTGTTGATTTACAATCCCCTCGAAGAGAAACCCTTagttgtttttaa
tcaattactttttatattttaatatGTCATATACTTTAAGTAGATAAAAT
CGCTCACGACAATGTTAAAAATAATAgagtttttcataaaaatattgtTA
ATATATTATAGAAAATTACAATCTATAAAGGCTTTGTATCATaagaattc
aaaatatttttactttatcgTTTtacatatacagattttttacGTAAAGG
TTGATTAATggtgtgtttttttcttttttttcttttgtataattttttta
gtagtgtataatatttatttggcattttattttttaaacacaCCATTAGC
AACTCTCGGAAATGAtcataattagaaatttctgtAAGGATTATAataag
ttttgacattttctcgtaACGCTTACCAGGAAATCaaggaattttcaaaa
tgagattcAAAAATTATTCTGGTTTTCTACTAGTGAACAATTATTGCTCG
TTCGTAATGCTTTAAGTGAATAGCATTACTGGTAAGCTTTTGGAGCTCAC
ACGATTGAAAGCTTTTACTCTGAGAATTCGCCACCCACGCCGAgagtaaa
aatattgaaaagtgaAACAGATTTATTTGGTCAGCTTAACACTGTCAAGA
TTCAAAATTGACCCCGTCTGTTTAAATAGATTTTGAGATTCCTTTCAAAA
CATACCTCGGATTGCAAAACTATGAAAATTTAGTgttattttgattgttt
caatagACGATGGAAATCAACATTTTTTCTANACTATGAaaatttagtgt
tttttttattgtttcaatagACGATGGAAATCAacattttttctattatt
ttatcACATAttgcaaaatttgttttatactGAATTTGTTTAATGAACTA
TCCCAATTTTTTGGTAcagtatttgatttttttaagcca

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000965	XLOC_000965	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000012	supercontig	sc0000012:656252..663390 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.9881e-09	0.717259	1.51839e-07	4.07913e-07	0	0	0	0	0	0	0	0	0.000885186	1.35442	4.69777e-05	0.000110446	1.07015	0.571521	0.0011719	0.0214753	0.0208097	0.0301793	6.48828	6.35579	1.79137e-09	2.42226e-07	0.171555	1.27377e-08	0.00496992	1.79187

Blast

[Close]

BLAST of TCONS_00001801 vs. Swiss-Prot (Human)
Match: GHC2 (Mitochondrial glutamate carrier 2 OS=Homo sapiens GN=SLC25A18 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.132e-84
Identity = 150/316 (47.47%), Postives = 200/316 (63.29%), Query Frame = 2

Query:  245 SFSAKLINGGIAGSIGTCCVFPLDLAKTRIQDQRTFSKTTGQAATRLYKNVFHCMYIVGKTEGVRGLYKGLGINLFLVNPEKAIKLAVNDQCRQHLGSKQGSMLPLRYEAMAGGLAGMCQIFITTPMEFLKIQMQVAGRNAESAQ----------------------TSAVKVAVNLMRQRGIAGIYKGTGATFIRDVPFSCVYFPLFSYLNSLGYKD-GRKPHPVHSLASGLGSGVFSAVLVTPMDVVKTRLQVLKRMEGEPIYNGWSDAVSKIYRNEGLSAFFKGAITRAIVVAPLFGIAQMVYFVGFAETIME 1123
            S +AKLINGG+AG +G  CVFP+DLAKTR+Q+Q       G+A   +YK +  C+    + EG  G+Y+G  +NL LV PEKAIKLA ND  R+ L  + G    L+ E +AG  AGMCQ+ +T PME LKIQ+Q AGR A   Q                       SA  +A  L+R +G+AG+Y+G GAT +RD+PFS +YFPLF+ LN+LG+ +   K    HS  SG  +G  +AV VTP+DV+KTR+Q LK+  GE +Y+G +D   K++  EG SAF KGA  RA+V+APLFGIAQ VYF+G  E I++
Sbjct:    7 SITAKLINGGVAGLVGVTCVFPIDLAKTRLQNQH------GKA---MYKGMIDCLMKTARAEGFFGMYRGAAVNLTLVTPEKAIKLAANDFFRRLL-MEDGMQRNLKMEMLAGCGAGMCQVVVTCPMEMLKIQLQDAGRLAVHHQGSASAPSTSRSYTTGSASTHRRPSATLIAWELLRTQGLAGLYRGLGATLLRDIPFSIIYFPLFANLNNLGFNELAGKASFAHSFVSGCVAGSIAAVAVTPLDVLKTRIQTLKKGLGEDMYSGITDCARKLWIQEGPSAFMKGAGCRALVIAPLFGIAQGVYFIGIGERILK 312

The following BLAST results are available for this feature:

BLAST of TCONS_00001801 vs. Swiss-Prot (Human)

BLAST of TCONS_00001801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GHC2	1.132e-84	47.47	Mitochondrial glutamate carrier 2 OS=Homo sapiens ...	[more]

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TCONS_00001801 (transcript) - C. hemisphaerica