TCONS_00001740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001740
Unique NameTCONS_00001740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001740 ID=TCONS_00001740|Name=TCONS_00001740|organism=Clytia hemisphaerica|type=transcript|length=2653bp
GGCAAAAATTAATTGTCGTCGTTGTTGCAGCCAACATTGTTAGCATAGAT
TGCACCCCCCCTGATTCTGATCAAGTTCAAATCAACAACAAGATTAATCA
TTGCCAATGATAATATGTGATCctccaagcgattttaagtaaataaaaat
ctTTCCGGCAAACATCAGAAAATGATCCGCCACATTGCCGGCAATATTCG
ATAATCGTCCGCTCACTAATAGAATTAAACCCGGCAATTTATCGGTTCAC
GAAATCAAGCAATTTTTTTCCTTCTCAAACCTATAGACGGAAACTTTCCG
GTTACCAGCCGTGAACGTCTATTTTTTGAAGGCAATTTGCCGACAATTTG
CCGGCCTTATGGATGCCGGCAGACgaagaataaaaacattctaGCATTAT
GTAATCAATATACGGTATATCACGGAACGAAAGCTGCTTGCGAATTCTTA
TAATTCCGGCTGTTCTGTGAAGTATTTTTATTATACACGAGGTTTCTCTC
GGATCAGATTCTTTCTTTACCATTTCAACTGGAGAGAAGAAACATGTTCA
TTCAATCAACAAAAGTATGAACAGAAAGTAAAAACTTCAACTTCTTGAAC
AGATAGACACACACCTTCCACAAACTTTGCTCAGAGCTTTCTTGACAGTG
AATATATTAATTTTCTGCTGAACTTGAGTGAAGAAGAGTCAAAGGAGGTA
TGTAGTTTGACTTGGGACTATTATACTGTCCAGGGTTTCGGTAGCGTGGG
AAGATCTATCCCACGTCACAGAAATCCTGCAAGCAGACGGGTAATCTATA
TCAATCTAATTACCAGTAGTAGATTTGTTATAAAAGTCAGTGCTGCTTAA
GGAAGAGCTGAGAAAGGTTTCTTGGAGCAGATTGGGCTGCTTGACAATGA
ATAGAGAGGGATTGCTTGAGCATAGAAGGTGTAATCAGAAcaatgttttg
aagaaaagaagatgAGATTGAGATGGGCTTTGAACATAGGTGTCATGGAA
ATGTCAGACGTGTATGCTAAATAAATCATAACATGGGGCTGTgggccATA
GAACAAACTTTGAAAAGATGAAGATCCTATTTTTGTGTTGGAGTGGAGAC
AAAGTCATGTGGCTGTCTAGGCTTTTTGAATGGCCGTAATGGAATAGAGT
TGTAGACAGTTGTCTAGGTGAGAAGAAGAGGAAGCATTTAGGACTCCCCC
TAGAGTTAGGTGTGCCGGCAGGAGTAAACACCCTTTGCTTTTCTAGAACC
ACCCATCTTCTCTACCAAGAGACATGAAGTCGATCAGGTGTCATGTCTCT
TCAACTTATACCTGTAGACGTGGAACATGACATGACATATCAGTGGAAGG
ATTCAAAGACTGTTATGTGCCTGAGTGAAGCCTCCAGAGGAGAGTGAGAA
GAttgagagaaagaaaaaaagatgttgaaagAAATATGTATTTTGAAAGC
AGCAGGGAAGATTAGATGGTGGGTAAATGAACATAGAAATATTCTTACAT
TAAGGTGAAGTTTTGGTGTCTGTTGTTGTGAGTAAGGTTCCGATGGTGGT
GTTATTTTTGTATACTGTGGTCGGTCATGGGATGGCATTTGACAATTCCT
CATCTTCTTCTATGATGGACCAATATTCATTAATGGTAGATCTGATGTAC
TCATCTTTGTTTCTGTATAGAATGAGAGGGAGAAGGGGTGGTCGAGGTCC
TTGATTTCGGTTGCCACCATAGAGCAAAGTGTGATGGGGTATTGACAGGG
CCTTTGCAATTTTGCGGTTAATGAGGGATAGTGGGTATCCACGAGCCAGA
AAAACTTTGGTAAGGAAACTCAGTTCTTTTGTTAGATTACGGTCATCGCT
GATTATGAGGTTGTATCGTAGTCCTTGTGAGTATATAATTCCTTCTTTGA
CATGTAGGGGGTGATTTGATTGAAAGTGAAGGAATTGAGAGCGGTCCGTG
GGTTTTCAAGATATGTTGTGGTGTTATAAAGTGTGAAATGTTAAATCGTG
ATATTGATGATAAGACTATTATAACGCAAATTATTAACAAATTTGTTGGT
AATaataaaaacttgtaaaaaaaaaacatttgtagGAAACCATTTGTGAA
TAGAGTTTATCATTGTTGAGTTTTAGGTGTGTCGTTCAGGTAGCAATGGG
ATTGGCGGTGTACGTCATACACGTCATGATAGTACCAAGTATGTCCTTTT
ACAGATGGGTTGTTAGAGACCCAGCAGAATTGGTCAAAAcgtttttttac
tttattttcattGAGTTGCGACGAATAGATAACGTGTGCAGCTAGCTCCG
GTGCACAGCCGTTTCCAAAGAAAAAGATAATTAGTTGGAACGCCTGTCTA
TCACTGTTGGGTTGAGCTCTCAAAGCTCTTTTTATATGCTGTGGCCTTGT
GTCTATTGGGAAGAAGGCGTCTCCATCTATTGTGTTAACAATTGACTGTC
TGTGTTGGCGTGAGAATGATCTTTGGATATAttggtttttggacctaccc
cggtggggtggaggtcctataaattcacctctgtccgtccgtccgttcgt
tcgttaccagcttttctcgagattgaaccATAAGGAATCttctgattttt
ggtacaaaggtgcaaaatggtggcggccaaaatgtgacggagcctgattt
tcg
Run BLAST on NCBI

transcript from alignment at sc0000011:713445..716097

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001740 ID=TCONS_00001740|Name=TCONS_00001740|organism=Clytia hemisphaerica|type=transcript|length=2653bp|location=Sequence derived from alignment at sc0000011:713445..716097 (Clytia hemisphaerica)
cgaaaatcaggctccgtcacattttggccgccaccattttgcacctttgt accaaaaatcagaaGATTCCTTATggttcaatctcgagaaaagctggtaa cgaacgaacggacggacggacagaggtgaatttataggacctccacccca ccggggtaggtccaaaaaccaaTATATCCAAAGATCATTCTCACGCCAAC ACAGACAGTCAATTGTTAACACAATAGATGGAGACGCCTTCTTCCCAATA GACACAAGGCCACAGCATATAAAAAGAGCTTTGAGAGCTCAACCCAACAG TGATAGACAGGCGTTCCAACTAATTATCTTTTTCTTTGGAAACGGCTGTG CACCGGAGCTAGCTGCACACGTTATCTATTCGTCGCAACTCaatgaaaat aaagtaaaaaaacgTTTTGACCAATTCTGCTGGGTCTCTAACAACCCATC TGTAAAAGGACATACTTGGTACTATCATGACGTGTATGACGTACACCGCC AATCCCATTGCTACCTGAACGACACACCTAAAACTCAACAATGATAAACT CTATTCACAAATGGTTTCctacaaatgttttttttttacaagtttttatt ATTACCAACAAATTTGTTAATAATTTGCGTTATAATAGTCTTATCATCAA TATCACGATTTAACATTTCACACTTTATAACACCACAACATATCTTGAAA ACCCACGGACCGCTCTCAATTCCTTCACTTTCAATCAAATCACCCCCTAC ATGTCAAAGAAGGAATTATATACTCACAAGGACTACGATACAACCTCATA ATCAGCGATGACCGTAATCTAACAAAAGAACTGAGTTTCCTTACCAAAGT TTTTCTGGCTCGTGGATACCCACTATCCCTCATTAACCGCAAAATTGCAA AGGCCCTGTCAATACCCCATCACACTTTGCTCTATGGTGGCAACCGAAAT CAAGGACCTCGACCACCCCTTCTCCCTCTCATTCTATACAGAAACAAAGA TGAGTACATCAGATCTACCATTAATGAATATTGGTCCATCATAGAAGAAG ATGAGGAATTGTCAAATGCCATCCCATGACCGACCACAGTATACAAAAAT AACACCACCATCGGAACCTTACTCACAACAACAGACACCAAAACTTCACC TTAATGTAAGAATATTTCTATGTTCATTTACCCACCATCTAATCTTCCCT GCTGCTTTCAAAATACATATTTctttcaacatctttttttctttctctca aTCTTCTCACTCTCCTCTGGAGGCTTCACTCAGGCACATAACAGTCTTTG AATCCTTCCACTGATATGTCATGTCATGTTCCACGTCTACAGGTATAAGT TGAAGAGACATGACACCTGATCGACTTCATGTCTCTTGGTAGAGAAGATG GGTGGTTCTAGAAAAGCAAAGGGTGTTTACTCCTGCCGGCACACCTAACT CTAGGGGGAGTCCTAAATGCTTCCTCTTCTTCTCACCTAGACAACTGTCT ACAACTCTATTCCATTACGGCCATTCAAAAAGCCTAGACAGCCACATGAC TTTGTCTCCACTCCAACACAAAAATAGGATCTTCATCTTTTCAAAGTTTG TTCTATggcccACAGCCCCATGTTATGATTTATTTAGCATACACGTCTGA CATTTCCATGACACCTATGTTCAAAGCCCATCTCAATCTcatcttctttt cttcaaaacattgTTCTGATTACACCTTCTATGCTCAAGCAATCCCTCTC TATTCATTGTCAAGCAGCCCAATCTGCTCCAAGAAACCTTTCTCAGCTCT TCCTTAAGCAGCACTGACTTTTATAACAAATCTACTACTGGTAATTAGAT TGATATAGATTACCCGTCTGCTTGCAGGATTTCTGTGACGTGGGATAGAT CTTCCCACGCTACCGAAACCCTGGACAGTATAATAGTCCCAAGTCAAACT ACATACCTCCTTTGACTCTTCTTCACTCAAGTTCAGCAGAAAATTAATAT ATTCACTGTCAAGAAAGCTCTGAGCAAAGTTTGTGGAAGGTGTGTGTCTA TCTGTTCAAGAAGTTGAAGTTTTTACTTTCTGTTCATACTTTTGTTGATT GAATGAACATGTTTCTTCTCTCCAGTTGAAATGGTAAAGAAAGAATCTGA TCCGAGAGAAACCTCGTGTATAATAAAAATACTTCACAGAACAGCCGGAA TTATAAGAATTCGCAAGCAGCTTTCGTTCCGTGATATACCGTATATTGAT TACATAATGCtagaatgtttttattcttcGTCTGCCGGCATCCATAAGGC CGGCAAATTGTCGGCAAATTGCCTTCAAAAAATAGACGTTCACGGCTGGT AACCGGAAAGTTTCCGTCTATAGGTTTGAGAAGGAAAAAAATTGCTTGAT TTCGTGAACCGATAAATTGCCGGGTTTAATTCTATTAGTGAGCGGACGAT TATCGAATATTGCCGGCAATGTGGCGGATCATTTTCTGATGTTTGCCGGA AagatttttatttacttaaaatcgcttggagGATCACATATTATCATTGG CAATGATTAATCTTGTTGTTGATTTGAACTTGATCAGAATCAGGGGGGGT GCAATCTATGCTAACAATGTTGGCTGCAACAACGACGACAATTAATTTTT GCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000926XLOC_000926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001740-exon-sc0000011-1491911889:713445..716097TCONS_00001740-exon-sc0000011-1491911889:713445..716097Clytia hemisphaericaexon
TCONS_00001740-exon-sc0000011-1510915933:713445..716097TCONS_00001740-exon-sc0000011-1510915933:713445..716097Clytia hemisphaericaexon
TCONS_00001740-exon-sc0000011-1575043694:713445..716097TCONS_00001740-exon-sc0000011-1575043694:713445..716097Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:713445..716097 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.322251 0.257354 0.540478 0.870747 1.17183 1.20123 0.55051 0.700095 0.34323 0.336773 0.182555 0.637047 0.375942 0.301019 0.190812 0.335409 0.255588 0.212553 0.205835 0.278554 0.276321 0.209765 0.036844 0.101837 0.863036 0.592872 0.211348 0.191705 0.203749 0.130368
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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