TCONS_00001711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001711
Unique NameTCONS_00001711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length950

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001711 ID=TCONS_00001711|Name=TCONS_00001711|organism=Clytia hemisphaerica|type=transcript|length=950bp
GATTTACCAACACCTGTCATTAGACAAAGTTTTATAATCTTTTGATTAGT
ACTtttgagatattcaaattttaagttttataatgtcattgattatgaca
tcataaaGCACTTTTATAAGTAATTTTATTAACAGGCATTTCTGAAATCT
AAATCCTAATTGATGTATAAATGACCAAAGGCTCCCAGTTTTCTGCACCA
AACGTATGTCCTTTTTGGACATGCCATAAGTTACACAAGAACCTCTGTAC
TGTCATTTTGGAGATAGATGACCTCAATCAAATCAATGATTGATTAAAAA
AGGCTCTTGAATAAGACTTTAGTTTTTATGGATCGAAATTAGATCAAACT
ATGGAAAAGAATGTAGCTTTGAAAGATCATCAACAGAAAGAACAGTTCTC
CCATCTCAGTCTATCTGGTAAAGAGAGGGCAAAAACAGAACAGACTTTAA
TATGTTTGATTCGTGGTTGTATTGGGAACCAAACTGTAGTTGAACTTCGA
AATGAAACCATTGTTTGCGGTAGAATACTAAACTGTGATGGTTTTATGAA
CTTGATAATGCAGAAAGCTTTATTTCAAAAGGCAAATGGTGAagaacttt
attttgaagaagtACATATTGTTGCAAAAAATATTCGATATGTACATATT
CCTGACAAAATTGACATTCAAAATActattgaaaaacaattattCAAACT
TGGAAAAACAAGACAAACTGGATCAACAAGTAGAGGATCAAGGAGAGGTT
CTGGTAGAGCAAGAGGAAGAGGGAGGGGCTTTGGAAGAGGTTTTGGAATC
GGCAGGggagaaataaaacaaaatcctATTTAATTTCAGTAGGTAACTTT
GTATATATTgtatttatgctatttgaacattgtttttatttgaattatCT
AGAAAAATTTAGTCAGATCTTTAGttataaaattaattataaaTCTGGTA
Run BLAST on NCBI

protein sequence of TCONS_00001711-protein

>TCONS_00001711-protein ID=TCONS_00001711-protein|Name=TCONS_00001711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MEKNVALKDHQQKEQFSHLSLSGKERAKTEQTLICLIRGCIGNQTVVELR
NETIVCGRILNCDGFMNLIMQKALFQKANGEELYFEEVHIVAKNIRYVHI
PDKIDIQNTIEKQLFKLGKTRQTGSTSRGSRRGSGRARGRGRGFGRGFGI
GRGEIKQNPI
Run BLAST on NCBI

transcript from alignment at sc0000011:136687..137636

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001711 ID=TCONS_00001711|Name=TCONS_00001711|organism=Clytia hemisphaerica|type=transcript|length=950bp|location=Sequence derived from alignment at sc0000011:136687..137636 (Clytia hemisphaerica)
TACCAGAtttataattaattttataaCTAAAGATCTGACTAAATTTTTCT
AGataattcaaataaaaacaatgttcaaatagcataaatacAATATATAC
AAAGTTACCTACTGAAATTAAATaggattttgttttatttctccCCTGCC
GATTCCAAAACCTCTTCCAAAGCCCCTCCCTCTTCCTCTTGCTCTACCAG
AACCTCTCCTTGATCCTCTACTTGTTGATCCAGTTTGTCTTGTTTTTCCA
AGTTTGaataattgtttttcaatagTATTTTGAATGTCAATTTTGTCAGG
AATATGTACATATCGAATATTTTTTGCAACAATATGTacttcttcaaaat
aaagttctTCACCATTTGCCTTTTGAAATAAAGCTTTCTGCATTATCAAG
TTCATAAAACCATCACAGTTTAGTATTCTACCGCAAACAATGGTTTCATT
TCGAAGTTCAACTACAGTTTGGTTCCCAATACAACCACGAATCAAACATA
TTAAAGTCTGTTCTGTTTTTGCCCTCTCTTTACCAGATAGACTGAGATGG
GAGAACTGTTCTTTCTGTTGATGATCTTTCAAAGCTACATTCTTTTCCAT
AGTTTGATCTAATTTCGATCCATAAAAACTAAAGTCTTATTCAAGAGCCT
TTTTTAATCAATCATTGATTTGATTGAGGTCATCTATCTCCAAAATGACA
GTACAGAGGTTCTTGTGTAACTTATGGCATGTCCAAAAAGGACATACGTT
TGGTGCAGAAAACTGGGAGCCTTTGGTCATTTATACATCAATTAGGATTT
AGATTTCAGAAATGCCTGTTAATAAAATTACTTATAAAAGTGCtttatga
tgtcataatcaatgacattataaaacttaaaatttgaatatctcaaaAGT
ACTAATCAAAAGATTATAAAACTTTGTCTAATGACAGGTGTTGGTAAATC

Coding sequence (CDS) from alignment at sc0000011:136687..137636

>TCONS_00001711 ID=TCONS_00001711|Name=TCONS_00001711|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0000011:136687..137636 (Clytia hemisphaerica)
TTAAATaggattttgttttatttctccCCTGCCGATTCCAAAACCTCTTC
CAAAGCCCCTCCCTCTTCCTCTTGCTCTACCAGAACCTCTCCTTGATCCT
CTACTTGTTGATCCAGTTTGTCTTGTTTTTCCAAGTTTGaataattgttt
ttcaatagTATTTTGAATGTCAATTTTGTCAGGAATATGTACATATCGAA
TATTTTTTGCAACAATATGTacttcttcaaaataaagttctTCACCATTT
GCCTTTTGAAATAAAGCTTTCTGCATTATCAAGTTCATAAAACCATCACA
GTTTAGTATTCTACCGCAAACAATGGTTTCATTTCGAAGTTCAACTACAG
TTTGGTTCCCAATACAACCACGAATCAAACATATTAAAGTCTGTTCTGTT
TTTGCCCTCTCTTTACCAGATAGACTGAGATGGGAGAACTGTTCTTTCTG
TTGATGATCTTTCAAAGCTACATTCTTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000897XLOC_000897Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001711-proteinTCONS_00001711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001711-exon-sc0000011-1491911889:136687..137636TCONS_00001711-exon-sc0000011-1491911889:136687..137636Clytia hemisphaericaexon
TCONS_00001711-exon-sc0000011-1510915933:136687..137636TCONS_00001711-exon-sc0000011-1510915933:136687..137636Clytia hemisphaericaexon
TCONS_00001711-exon-sc0000011-1575043694:136687..137636TCONS_00001711-exon-sc0000011-1575043694:136687..137636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:136687..137636 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.6562	14.4268	8.07731	6.15219	19.4991	13.3165	12.6803	12.5051	8.27094	5.74713	5.14174	7.01505	4.87187	5.02642	7.74824	7.03133	9.56057	8.36254	2.3412	2.34338	12.4987	8.19629	24.0445	18.017	8.01913	10.1389	3.21687	3.01275	10.6282	13.4273
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom
Blast
[Close]
BLAST of TCONS_00001711 vs. Swiss-Prot (Human)
Match: LSM10 (U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens GN=LSM10 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.179e-21
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 3 
Query:  405 LSLSGKERAKTEQTLICLIRGCIGNQTVVELRNETIVCGRILNCDGFMNLIMQKALFQKANGEELYFEEVHIVAKNIRYVHIPDKIDIQNTIEKQL 692
            +S S KER  +E +LI L++G  G  T V+LR+E++  GRI N D FMN+ + K  +    G ++  +++ +  +N+RYVHIPD ++I +TIE+QL
Sbjct:    3 VSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQL 98
The following BLAST results are available for this feature:
BLAST of TCONS_00001711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LSM103.179e-2141.67U7 snRNA-associated Sm-like protein LSm10 OS=Homo ... [more]
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