TCONS_00001711-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001711-protein
Unique NameTCONS_00001711-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length160

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001711-protein ID=TCONS_00001711-protein|Name=TCONS_00001711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MEKNVALKDHQQKEQFSHLSLSGKERAKTEQTLICLIRGCIGNQTVVELR
NETIVCGRILNCDGFMNLIMQKALFQKANGEELYFEEVHIVAKNIRYVHI
PDKIDIQNTIEKQLFKLGKTRQTGSTSRGSRRGSGRARGRGRGFGRGFGI
GRGEIKQNPI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000897XLOC_000897Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001711TCONS_00001711Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 37..99
e-value: 1.6E-7
score: 30.8
NoneNo IPR availableGENE3D2.30.30.100coord: 35..140
e-value: 6.7E-12
score: 44.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..152
NoneNo IPR availableCDDcd01733LSm10coord: 24..101
e-value: 4.21056E-30
score: 105.315
IPR010920LSM domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 34..153

Blast
[Close]
BLAST of TCONS_00001711-protein vs. Swiss-Prot (Human)
Match: LSM10 (U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens GN=LSM10 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.595e-24
Identity = 43/111 (38.74%), Postives = 70/111 (63.06%), Query Frame = 0 
Query:   19 LSLSGKERAKTEQTLICLIRGCIGNQTVVELRNETIVCGRILNCDGFMNLIMQKALFQKANGEELYFEEVHIVAKNIRYVHIPDKIDIQNTIEKQLFKLGKTRQTGSTSRG 129
            +S S KER  +E +LI L++G  G  T V+LR+E++  GRI N D FMN+ + K  +    G ++  +++ +  +N+RYVHIPD ++I +TIE+QL  + + R  G   +G
Sbjct:    3 VSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQG 113
The following BLAST results are available for this feature:
BLAST of TCONS_00001711-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LSM104.595e-2438.74U7 snRNA-associated Sm-like protein LSm10 OS=Homo ... [more]
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