TCONS_00001688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001688
Unique NameTCONS_00001688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001688 ID=TCONS_00001688|Name=TCONS_00001688|organism=Clytia hemisphaerica|type=transcript|length=2579bp
TTTCATTCTTTTGAATTTCGTTTTAGAACAACTAacagtgaaaattttaa
atggcTTTCAATGTGGCAGATTTACAAACTTTATTTTCgttgaaaattga
agattgtCACAACAAGAAACTGGAATCATGTTTAGATATTCAAACTGAAA
GAGAAGATATTGTACCAAActtatttgatgaattttcaaaCATTGCTGAC
ACTGGCGTTTTCCAAGAACCATTCTCattaaagaaatataaaaacCTCAT
CCCAAAAAGATCCccaaagaaaaaatcaagaaagttgaaaaaggttgatg
tgaataaaaatacaaaacttcTTTCTAAAGAGAAAGTTCGAAGCTGTAGT
CCTTCATTTAGTATTGATTCAGCTGTTGATTTAAGTGCTGACAATTCACT
ACTGCATACCCAAAAATGGTTTGTTGATACTGATTTTGATGTTGATATAC
AGTCAAATTGTGATAGTGGAGTTTGCGATTTCAATATATCAGCCGATGCC
GTTATGAAAAACTTGAGTGATGatattcaattgtcaataaaaaacaatgt
tAATGCAGACGAATTCCCCGAAAAACGTTCATCAAACAAGCATGACTTTG
ATAATATTCAATCAAGTATTACAACAAACTCTTCCTGCAGTGAGAAAAGT
AAATTGAAAGCTTtgaataaaaagtcaaaaagattCAAATCTAAAAAGCC
AAGACAGTTCAAGGATTCCTTTAGAAAGCACAAAGAAAGCTATATGAAGC
TTCTTGATGAGCAGAAATGTATTGTCCAACATTCTAGGAAGGAATCACGT
TTATCCACCATTAACTCGTTATCTGATATCCTTCTTACCAACTTAGATCA
TGCAATACCAATTATTGTTGAAAAAGAAGGTCAAAATGTAGAGCACTTAG
GGAAAAGTTTAACCAAAGAAATTGAAGTCCAAACTCTAAGTAACGAGAGT
CATTTTACTGAGTCCCTCATGAATATGATCTATACACCAATGAAAGATAA
TGATGATTTACAAAGCAATCCTTTGCTTATTGATCCACCAGAATCATTTT
GTCTGCCAACTAAAGAGGTCGACGCACCTGCAAAGACTACTAACATATTG
AGTACAAGTTGTACAATCAACAGTGAAACTTTAGCTGATAAAGATGTTTC
AGGCAAACTAACAACAGTGACTTCCAGCTCAATAGATTGTCCATGTGATA
ATAATCCAGATGGAAACACTCTAGCTGGCGATAAAGATTTGTCTTGTGTC
ATTCTAGAAAACAGTGCCAATGTGAAATCATTCAACATTAAACTTTTTAC
TGAAGTAGATAAGATCATAACAAAAGAGTGTGCCACTTCACCCGTGAAAA
TGAAACCTAGAAGGCGATTCATAGTTCAAGATGATGAGGATATACCAAGT
GCTTTATTGGAAATTCTAAATGGACCACAAGAAGTTAAAAATCCTTTAAG
TACACCTGGTCAAAATACACAAATAGCTACTGCTGATGAAAATGATATAT
CAATGAAGACTGATTCTAGTTCCAAAACTGGTCATCACACTTCAATACAA
ATCTTAGATAAAAACCAGACATTTGATTCGAGTGCtccaaattcaaaaca
aagtaccttcactaaattgtccaaaaagAGTGAAAGGGTCGCATCGGACA
GTGATGGCTCNTTcactaaattgtccaaaaataGTGAAAGGGTCGCATCG
GACAGTGATGGCTCCACATGTGACACCCAAGATCTTCCACGACCATCAAA
TGATTTCTGCGTTAATTTACTCAACTTTTATTGTACTGGACTTCTTGCAA
GGAGTGATACAGCTGAAGAAAACAGATCTAGTTTTTCTGAATATTCAGAT
GATGAATAATTACATTATTCCAAACATGGATATCGGTTACCAATTTCTTT
GTGTTGGGCTTTGGTTGGTTATGTGTTATATATAAATTGATGAATCTGGC
CCCCAGTGGCCGGTAATTTGTACAATGTTGTGTTTGCAGATGGTGCTTTG
CCTTCATTGCACTCATCCGTAGGCAAGCAATCAACAAAATATCAGTATAA
GGCTAAGTATAAAAAGGTCGTAAGTAGACCTGTAAGTATAATTTTTTGGT
AAGTGTTTCCTCGGGTAGTTAAAAAACGTCAGGTAAAGTTTATACAGTCT
TAAAAAATCCCCTCCTTGATCATGGTTTTATTAGACCGGTCGGTAAGAAC
AAAATCATAAGAACAGGTACTACACTATAAGAACAAGATACTACAATGAT
ACTTAAATGTGCGAATGTTTAAGATGCGATATAATTTAGAATTTAGAATA
ATGTCTATTtcatttttcaccattttgtagcatattttttataatttata
aaatttatttagcTATTACATATTTTGTCTATTGAGATGgttttcaaatt
aaaatctTCTAGTCATGTTGTGATGTCAAAAGGGAAAAAATATCAGCTTT
TTTGGGGccaactttctttttaattcgAAATGTATTCTACTCAACATTAG
ATTTAGTCTAAAATGAAGAACAAAACACAGCGCTGTAAATATTGTACtca
gttttgtttatattaatgtaaaaaataat
Run BLAST on NCBI

protein sequence of TCONS_00001688-protein

>TCONS_00001688-protein ID=TCONS_00001688-protein|Name=TCONS_00001688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=602bp
MAFNVADLQTLFSLKIEDCHNKKLESCLDIQTEREDIVPNLFDEFSNIAD
TGVFQEPFSLKKYKNLIPKRSPKKKSRKLKKVDVNKNTKLLSKEKVRSCS
PSFSIDSAVDLSADNSLLHTQKWFVDTDFDVDIQSNCDSGVCDFNISADA
VMKNLSDDIQLSIKNNVNADEFPEKRSSNKHDFDNIQSSITTNSSCSEKS
KLKALNKKSKRFKSKKPRQFKDSFRKHKESYMKLLDEQKCIVQHSRKESR
LSTINSLSDILLTNLDHAIPIIVEKEGQNVEHLGKSLTKEIEVQTLSNES
HFTESLMNMIYTPMKDNDDLQSNPLLIDPPESFCLPTKEVDAPAKTTNIL
STSCTINSETLADKDVSGKLTTVTSSSIDCPCDNNPDGNTLAGDKDLSCV
ILENSANVKSFNIKLFTEVDKIITKECATSPVKMKPRRRFIVQDDEDIPS
ALLEILNGPQEVKNPLSTPGQNTQIATADENDISMKTDSSSKTGHHTSIQ
ILDKNQTFDSSAPNSKQSTFTKLSKKSERVASDSDGXFTKLSKNSERVAS
DSDGSTCDTQDLPRPSNDFCVNLLNFYCTGLLARSDTAEENRSSFSEYSD
DE
Run BLAST on NCBI

transcript from alignment at sc0000011:770637..773891-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001688 ID=TCONS_00001688|Name=TCONS_00001688|organism=Clytia hemisphaerica|type=transcript|length=3255bp|location=Sequence derived from alignment at sc0000011:770637..773891- (Clytia hemisphaerica)
TTTCATTCTTTTGAATTTCGTTTTAGAACAACTAACAGTGAAAATTTTAA ATGGCTTTCAATGTGGCAGATTTACAAACTTTATTTTCGTTGAAAATTGA AGATTGTCACAACAAGAAACTGGAATCATGTTTAGATATTCAAACTGAAA GAGAAGATATTGTACCAAACTTATTTGATGAATTTTCAAACATTGCTGAC ACTGGCGTTTTCCAAGAACCATTCTCATTAAAGAAATATAAAAACCTCAT CCCAAAAAGATCCCCAAAGAAAAAATCAAGAAAGTTGAAAAAGGTTGATG TGAATAAAAATACAAAACTTCTTTCTAAAGAGAAAGTTCGAAGCTGTAGT CCTTCATTTAGTATTGATTCAGCTGTTGATTTAAGTGCTGACAATTCACT ACTGCATACCCAAAAATGGTTTGTTGATACTGATTTTGATGTTGATATAC AGTCAAATTGTGATAGTGGAGTTTGCGATTTCAATATATCAGCCGATGCC GTTATGAAAAACTTGAGTGATGATATTCAATTGTCAATAAAAAACAATGT TAATGCAGACGAATTCCCCGAAAAACGTTCATCAAACAAGCATGACTTTG ATAATATTCAATCAAGTATTACAACAAACTCTTCCTGCAGTGAGAAAAGT AAATTGAAAGCTTTGAATAAAAAGTCAAAAAGATTCAAATCTAAAAAGCC AAGACAGTTCAAGGATTCCTTTAGAAAGCACAAAGAAAGCTATATGAAGC TTCTTGATGAGCAGAAATGTATTGTCCAACATTCTAGGAAGGAATCACGT TTATCCACCATTAACTCGTTATCTGATATCCTTCTTACCAACTTAGATCA TGCAATACCAATTATTGTTGAAAAAGAAGGTCAAAATGTAGAGCACTTAG GGAAAAGTTTAACCAAAGAAATTGAAGTCCAAACTCTAAGTAACGAGAGT CATTTTACTGAGTCCCTCATGAATATGATCTATACACCAATGAAAGATAA TGATGATTTACAAAGCAATCCTTTGCTTATTGATCCACCAGAATCATTTT GTCTGCCAACTAAAGAGGTCGACGCACCTGCAAAGACTACTAACATATTG AGTACAAGTTGTACAATCAACAGTGAAACTTTAGCTGATAAAGATGTTTC AGGCAAACTAACAACAGTGACTTCCAGCTCAATAGATTGTCCATGTGATA ATAATCCAGATGGAAACACTCTAGCTGGCGATAAAGATTTGTCTTGTGTC ATTCTAGAAAACAGTGCCAATGTGAAATCATTCAACATTAAACTTTTTAC TGAAGTAGATAAGATCATAACAAAAGAGTGTGCCACTTCACCCGTGAAAA TGAAACCTAGAAGGCGATTCATAGTTCAAGATGATGAGGATATACCAAGT GCTTTATTGGAAATTCTAAATGGACCACAAGAAGTTAAAAATCCTTTAAG TACACCTGGTCAAAATACACAAATAGCTACTGCTGATGAAAATGATATAT CAATGAAGACTGATTCTAGTTCCAAAACTGGTCATCACACTTCAATACAA ATCTTAGATAAAAACCAGACATTTGATTCGAGTGCTCCAAATTCAAAACA AAGTACCTTCACTAAATTGTCCAAAAAGAGTGAAAGGGTCGCATCGGACA GTGATGGCTCNTTCACTAAATTGTCCAAAAATAGTGAAAGGGTCGCATCG GACAGTGATGGCTCCACATGTGACACCCAAGATCTTCCACGACCATCAAA TGATTTCTGCGTTAATTTACTCAACTTTTATTGTACTGGACTTCTTGCAA GGAGTGATACAGCTGAAGAAAACAGATCTAGTTTTTCTGAATATTCAGAT GATGAATAATTACATTATTCCAAACATGGATATCGGTTACCAATTTCTTT GTGTTGGGCTTTGGTTGGTTATGTGTTATATATAAATTGATGAATCTGGC CCCCAGGTAAATATACCGGCAACCTGTTTCTTAGGAACTGTTCCTTTAGA GACTTGGATAATCTTTCAAATATTTATAGTTTAAGAAAACATACAAAAAA ACTTTATTAGAACCTAACTTGTTCAAAATTCTCATTATGTATATAACTAT CTGATTAATTAGTTTGATTATTTCAATGTTTTTAGTAGGTTANTATAACT ATCTGATTAATTAGTTTGATTATTTTAATGTTTTTAGTAGGTTAAAAGCC TTCTTATTGTTTTGTTTCAGTGGCCGGTAATTTGTACAATGTTGTGTTTG CAGATGGTGGTACGTATAAAATCTATGGTAGTATCATCATTTTCAAAAAT TTCTATTAAAATTATGAACTAAAAACTTTTCAGGTGTGTCTTAAACAAAA TTAAAGAAAGTCGAAAGTTAAGTTCAAATCTTCAATTCTTATACAGACAT TTTTCGTGTTTTTCAAGTATTCATACATCTACACACTTGGTATGTATAGT TCCTTGCTTTTCCCATACCTTTAAATTTCCAAACAATGTAATATTTTGTA AACAAAACTCTTCTTAAAACCTGTTTACTTTTTTGCATAAAGAAAACTAA ACTTTTATTATACTACTATACTATAGACTAGGCATTGAAAGTTTGAATCT AAATGGTATCTGGATCTCAATTACATCATTTTTGAAATGCTCTAATAACT AAACTTTCTCCTCTCTTATAGCTTTGCCTTCATTGCACTCATCCGTAGGC AAGCAATCAACAAAATATCAGTATAAGGCTAAGTATAAAAAGGTCGTAAG TAGACCTGTAAGTATAATTTTTTGGTAAGTGTTTCCTCGGGTAGTTAAAA AACGTCAGGTAAAGTTTATACAGTCTTAAAAAATCCCCTCCTTGATCATG GTTTTATTAGACCGGTCGGTAAGAACAAAATCATAAGAACAGGTACTACA CTATAAGAACAAGATACTACAATGATACTTAAATGTGCGAATGTTTAAGA TGCGATATAATTTAGAATTTAGAATAATGTCTATTTCATTTTTCACCATT TTGTAGCATATTTTTTATAATTTATAAAATTTATTTAGCTATTACATATT TTGTCTATTGAGATGGTTTTCAAATTAAAATCTTCTAGTCATGTTGTGAT GTCAAAAGGGAAAAAATATCAGCTTTTTTGGGGCCAACTTTCTTTTTAAT TCGAAATGTATTCTACTCAACATTAGATTTAGTCTAAAATGAAGAACAAA ACACAGCGCTGTAAATATTGTACTCAGTTTTGTTTATATTAATGTAAAAA ATAAT

Coding sequence (CDS) from alignment at sc0000011:770637..773891-

>TCONS_00001688 ID=TCONS_00001688|Name=TCONS_00001688|organism=Clytia hemisphaerica|type=CDS|length=1809bp|location=Sequence derived from alignment at sc0000011:770637..773891- (Clytia hemisphaerica)
ATGGCTTTCAATGTGGCAGATTTACAAACTTTATTTTCGTTGAAAATTGA
AGATTGTCACAACAAGAAACTGGAATCATGTTTAGATATTCAAACTGAAA
GAGAAGATATTGTACCAAACTTATTTGATGAATTTTCAAACATTGCTGAC
ACTGGCGTTTTCCAAGAACCATTCTCATTAAAGAAATATAAAAACCTCAT
CCCAAAAAGATCCCCAAAGAAAAAATCAAGAAAGTTGAAAAAGGTTGATG
TGAATAAAAATACAAAACTTCTTTCTAAAGAGAAAGTTCGAAGCTGTAGT
CCTTCATTTAGTATTGATTCAGCTGTTGATTTAAGTGCTGACAATTCACT
ACTGCATACCCAAAAATGGTTTGTTGATACTGATTTTGATGTTGATATAC
AGTCAAATTGTGATAGTGGAGTTTGCGATTTCAATATATCAGCCGATGCC
GTTATGAAAAACTTGAGTGATGATATTCAATTGTCAATAAAAAACAATGT
TAATGCAGACGAATTCCCCGAAAAACGTTCATCAAACAAGCATGACTTTG
ATAATATTCAATCAAGTATTACAACAAACTCTTCCTGCAGTGAGAAAAGT
AAATTGAAAGCTTTGAATAAAAAGTCAAAAAGATTCAAATCTAAAAAGCC
AAGACAGTTCAAGGATTCCTTTAGAAAGCACAAAGAAAGCTATATGAAGC
TTCTTGATGAGCAGAAATGTATTGTCCAACATTCTAGGAAGGAATCACGT
TTATCCACCATTAACTCGTTATCTGATATCCTTCTTACCAACTTAGATCA
TGCAATACCAATTATTGTTGAAAAAGAAGGTCAAAATGTAGAGCACTTAG
GGAAAAGTTTAACCAAAGAAATTGAAGTCCAAACTCTAAGTAACGAGAGT
CATTTTACTGAGTCCCTCATGAATATGATCTATACACCAATGAAAGATAA
TGATGATTTACAAAGCAATCCTTTGCTTATTGATCCACCAGAATCATTTT
GTCTGCCAACTAAAGAGGTCGACGCACCTGCAAAGACTACTAACATATTG
AGTACAAGTTGTACAATCAACAGTGAAACTTTAGCTGATAAAGATGTTTC
AGGCAAACTAACAACAGTGACTTCCAGCTCAATAGATTGTCCATGTGATA
ATAATCCAGATGGAAACACTCTAGCTGGCGATAAAGATTTGTCTTGTGTC
ATTCTAGAAAACAGTGCCAATGTGAAATCATTCAACATTAAACTTTTTAC
TGAAGTAGATAAGATCATAACAAAAGAGTGTGCCACTTCACCCGTGAAAA
TGAAACCTAGAAGGCGATTCATAGTTCAAGATGATGAGGATATACCAAGT
GCTTTATTGGAAATTCTAAATGGACCACAAGAAGTTAAAAATCCTTTAAG
TACACCTGGTCAAAATACACAAATAGCTACTGCTGATGAAAATGATATAT
CAATGAAGACTGATTCTAGTTCCAAAACTGGTCATCACACTTCAATACAA
ATCTTAGATAAAAACCAGACATTTGATTCGAGTGCTCCAAATTCAAAACA
AAGTACCTTCACTAAATTGTCCAAAAAGAGTGAAAGGGTCGCATCGGACA
GTGATGGCTCNTTCACTAAATTGTCCAAAAATAGTGAAAGGGTCGCATCG
GACAGTGATGGCTCCACATGTGACACCCAAGATCTTCCACGACCATCAAA
TGATTTCTGCGTTAATTTACTCAACTTTTATTGTACTGGACTTCTTGCAA
GGAGTGATACAGCTGAAGAAAACAGATCTAGTTTTTCTGAATATTCAGAT
GATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000880XLOC_000880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001688-exon-sc0000011-1575043694:771936..773891TCONS_00001688-exon-sc0000011-1575043694:771936..773891Clytia hemisphaericaexon
TCONS_00001688-exon-sc0000011-1575043694:771633..771671TCONS_00001688-exon-sc0000011-1575043694:771633..771671Clytia hemisphaericaexon
TCONS_00001688-exon-sc0000011-1575043694:770637..771220TCONS_00001688-exon-sc0000011-1575043694:770637..771220Clytia hemisphaericaexon
TCONS_00001688-exon-sc0000011-1510915933:771936..773891TCONS_00001688-exon-sc0000011-1510915933:771936..773891Clytia hemisphaericaexon
TCONS_00001688-exon-sc0000011-1510915933:771633..771671TCONS_00001688-exon-sc0000011-1510915933:771633..771671Clytia hemisphaericaexon
TCONS_00001688-exon-sc0000011-1510915933:770637..771220TCONS_00001688-exon-sc0000011-1510915933:770637..771220Clytia hemisphaericaexon
TCONS_00001688-exon-sc0000011-1491911889:771936..773891TCONS_00001688-exon-sc0000011-1491911889:771936..773891Clytia hemisphaericaexon
TCONS_00001688-exon-sc0000011-1491911889:771633..771671TCONS_00001688-exon-sc0000011-1491911889:771633..771671Clytia hemisphaericaexon
TCONS_00001688-exon-sc0000011-1491911889:770637..771220TCONS_00001688-exon-sc0000011-1491911889:770637..771220Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001688-proteinTCONS_00001688-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:770637..773891 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20944 2.77847 0.0402947 9.00484e-10 2.46413 0.0121143 1.90191 1.58343e-07 3.04887 1.98018 0.000772258 1.67591 1.40581 0.000312122 9.96914e-09 0.662642 0.00719944 3.4858 0.573143 0.00015284 0.00011491 0.00522512 0.000615387 0.104264 3.29374 4.82225 0.0658853 0 0.198134 0.178911
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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