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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001682 ID=TCONS_00001682|Name=TCONS_00001682|organism=Clytia hemisphaerica|type=transcript|length=3317bpRun BLAST on NCBI protein sequence of TCONS_00001682-protein >TCONS_00001682-protein ID=TCONS_00001682-protein|Name=TCONS_00001682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=757bp MSWLSDFTSKAENLLTKFDQTAAQTLNESGIQDTLHNVTQPAPTTASPSYRun BLAST on NCBI transcript from alignment at sc0000011:592890..624504- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001682 ID=TCONS_00001682|Name=TCONS_00001682|organism=Clytia hemisphaerica|type=transcript|length=31615bp|location=Sequence derived from alignment at sc0000011:592890..624504- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000011:592890..624504- >TCONS_00001682 ID=TCONS_00001682|Name=TCONS_00001682|organism=Clytia hemisphaerica|type=CDS|length=36384bp|location=Sequence derived from alignment at sc0000011:592890..624504- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001682 vs. Swiss-Prot (Human)
Match: GOGA5 (Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3) HSP 1 Score: 309.686 bits (792), Expect = 1.413e-90 Identity = 265/769 (34.46%), Postives = 412/769 (53.58%), Query Frame = 2
Query: 65 MSWLSDFTSKAENLLTKFDQTAAQTL----NESGIQDTLHNVTQPAPTTASPSYEQESPVTTASSKEYQNASHLFGGTQNERKSLPTNPASTSTYTPVASVSTTTRPPVLTNKPLQQVXXXXXXXXXXXXXXXXXXLKKEEDMLFEFLNSNPPPATAIKGHTRNLSGPKTSTPRRPSATTASTIPVSQTTTTVSTRPEG--------PAIDTVPPLSAKPSISPVNIDTVDAVPVIEKPTTTTQKEPLIHQMNSKESKDGESR-VSSXXXXXXXXXXXXQSLHEELATLSSKLKEQQKETEKYRTRYENRRNQQNEDYERVRAGFENREADLNEALKAKDSQLAVLRVRIQETDAELQGKTKSLEDVQKQNEQLLRDHSEASGVQGTVMSNLRQKMXXXXXXXXXXXXXXSSMKNELLNVNTKLETEQQQYAVNIKDLHSKQTQGKDKTRELEMRVKVAEDSAENSQKELKEYKDKAARILQAKEKLIASLRQGSDSTSDVSPTLLS-ELEELRQDRDMVRDELQQNKYKMEQLRQEYLDLDMLHKNDSDDNQDKIETLQSSLQDEVQKRQTAEEDMKRYIQELHFTREEIHSLKKSQISKNQEYEAEVKRLQNQVNVKASSSSSQEELENRIRTLTDSLIHKQTVVEALSTEKNSLNLQLERLEKQYKDIQNSLIKRNKSTDIEDGTGEAKLLPMNTIMPKQITGNV-----RWRSTVNEIDKFSIRLGVFLRRYPIARLMVIFYMLLLHLWVTFVILTYTPEIHNHD 2314
MSW D KAE+LL + DQ AA L N S I + T+ Y Q P +T ++ N R T A T A+V +R PV + P++ S +S + R S + ++++LF+FLNS+ T + K TP S+ T+S V+ + TT+ T E A ++ + S N+ + A P PT + DG+S +S+L LEN LL+NE+QSL++E+A+L + KE Q+E K R R E + N + +R+ G + DL EA+ AKDSQLAVL+VR+QE D L +T++LE +Q + ++++D SE + +Q + ++++ E + L++E+ M++E K+E E+Q A I K + K + EL+ +VK+ + + E+S++EL +YK KA RILQ+KEKLI SL++GS S T S ELEELR +++M R+E+Q+ ++ QLR E D++ N+++ +++++ L + + +Q E +++R QE H+ E+++ K + S+ ++ + E+++L+NQ+ K S+SSQ ELENR+ LT++LI KQT++E+LSTEKNSL QLERLE+Q S + GE L ++ N+ + R + ID+FSIRLG+FLRRYPIAR+ VI YM LLHLWV V+LTYTPE+H HD
Sbjct: 1 MSWFVDLAGKAEDLLNRVDQGAATALSRKDNASNIYSKNTDYTELHQQNTDLIY-QTGPKST----------YISSAADNIRNQKATILAGT------ANVKVGSRTPVEASHPVENASVPRPSSHFVRRKKS----EPDDELLFDFLNSSQKEPTG----RVEIRKEKGKTPVFQSSQTSSVSSVNPSVTTIKTIEENSFGSQTHEAASNSDSSHEGQEESSKENVSSNAACP-DHTPTP---------------NDDGKSHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVE-KWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGIDNGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVLLTYTPEMH-HD 726 The following BLAST results are available for this feature:
BLAST of TCONS_00001682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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