TCONS_00001644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001644
Unique NameTCONS_00001644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001644 ID=TCONS_00001644|Name=TCONS_00001644|organism=Clytia hemisphaerica|type=transcript|length=2426bp
tttggtTTAAGATCAAAATTATAAATCAAAATGACTGAGACAAATTGTGA
TGAAGATTATCTGTTTGCAAACTTTGATACGACTACAAAAGAAGACACCA
TGGAAGATGGCGGTGGTGGAGGTGGAGGGAATGAAACAGCCACTGAAACA
GAAGAGGAATATGTGCCAGCCCCAATCACTTCAAAGCCAAAGAAATCTAA
AAAGAGTAAACGAACTGGAGGTGATTTAGACGAAGCTCAAGTTAATGCCC
AAAATAAATACATCAACGAGCTGGAAcagcaaaatttgaagttgAAATCT
ATTATTAAACGTATGTTAGGTCCACAGGTGTTTTCCATGGTGAATGATTT
ACAAGGAGATGAGGAGATAGATCTTGTAAAGAAACTGGAGAATGATATTC
AGTCAAAACCCTTTGCTGTTGTCATGTTCCTAAACAATGATATTTCAACC
GCTCATCGTAAGGAAATCAACAATATCATGCGCGAGGTCAGTGAAAAAGA
TGCCAAACAAGACGTCTTGATGGCTCATAAATTACAACCACAGAACTCTG
CTATTCCTCTAAAAGCATTTACTACTAATCTCAAAGGTAAACGTTGCAAC
CCTGGTAAAAATCAGGATGAGGAACCTTACATTGTTTGTTCATGTCAGTA
TTTTAAGAGTTTTTACTTAGATCGACTTGGTGTTCCACTGCTAGAAGATA
ACCCAAACCAAACAGATGTATTAGATGTACCAGCCTATCCACAGATTTTT
AGTAAAGCCTTACCCATTGTCGAAGAGGCTTTGAACGTGCGAGTCAAACA
CATGAAACAGTGTTTCAACTGTGGTGGCGAGCATCATTTGAATGAATGCA
CTGAACCCAGAGATCACAACCGGATACGCGAGAATCGTAACAAATTCGCC
AGTAAAGGACCTCCTAAAATCAACTTCAACATGGACACTGATGAACTAGA
TCCTCGCTTCAAACCATTCAAACCAGGGGTAATCAGTGTTGGCCTGGAAG
AGGCCCTCGGTATCTCTCTTAAAGAACAGTTACCTCCTTACATCTATAAA
ATGAGAGAGCTGGGCTATCCACCAGCTTGGGTGAGACCTGTAGATGATGA
TGGATTGAAAGTGTATGGAGCTGATGGAAATGTCATCGAAAATGCTGATT
ATGAAGAAGGAGAAATCAAACCTATCAATATCCCAGATATTGTTGAATAC
CCAGGATTCAACGTTCCTCCACCACAGGGAGTGGCTGATGAATACGAAGC
AATGGGAGCTCCTAAATTCAACAAAACAAACGCCGATTATGACGCCAGGC
GGAAACGAGCGCAAATCCTGGGATATTTCGAAAACGAGCACGGCGAACCT
CTcgccaaaaaattgaaattcgacGATTCTGTCAGTAtggaaattgatga
aaatacgGTTGATCTTGTCGACGGGAAACCACCACTTCCGCTGATTGACG
TGACCGCTCGTCCGCCATCACCGGAACATGATACGGAAGAATCAAACAAA
GAATCAACTGCTGAAAGTCAAGACGAAGAAGTGTTCGCTGATGGAGAAGG
CGGCGAAGAAACGAGTGGAAAAGACACGGCAACCGAACAAGAAACGGAAG
ACGAAAGTGCCGTGactgaaaaagaagatgaatcAACGGATGCTGATAGT
AACGGGAAAACAACGCGTCTGAGTTCTTCCACCAAGGACATCGATGATAC
AACTTACCGACATTGGTTTTCACAAGCGTTCACAAGTAGTAAAGGACTCA
CATACACGATGTATACACCTCCCCCGCAATGTTTACAAAACGTCAAAATG
TCAGACTTACCTAAAAACCCGGTCATTGAAATCGACCGTGAGCCGTGGAA
AACGTCGAATGTCAGCTGGTACTTTCCGCTTTACGGTGATCTGGCCGCCC
CCACCGGTACCTTTGATAACATACGGACATTGCTGAAAGACACGAATCTC
AAACGAAAGAAACGAAAGCCTTTGAAGTGAAAGATGTATCTTTCATGTTC
TTCGTGTTTCTAAGAGAGACAACTTCAACTTTTCCCTGCTGGAAATAAAG
AGGTAACTAAAACGACTCatctaaaaactaaaaacttcaTCTTACTTACG
GAGTTTTGCAGTTTCCCCTGATGTATATCATGAGATCCTAAGGTGTATGG
TTTACCGTAATGATAATGACAGATATGTAAATTATTAGACGATTCGAATG
ATGTAACAATGATAAATGTGAGTTTCACTGTATTCTCATTCATTCTTTCG
GAACGTaggacaatagaaaaataaaatgtgtCTGGGAAGAAAGCGCAACA
AAATCCATAATGATgaaaatcctcataatttaaGCAAAATTTGGTGAACT
AAAAAACTATTAATTGCCTTGGGAATGGAACAGGGAAGCTAGGTCGTATT
GTATGAAATCTTTTTATCTGGACAAT
Run BLAST on NCBI

protein sequence of TCONS_00001644-protein

>TCONS_00001644-protein ID=TCONS_00001644-protein|Name=TCONS_00001644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp
MTETNCDEDYLFANFDTTTKEDTMEDGGGGGGGNETATETEEEYVPAPIT
SKPKKSKKSKRTGGDLDEAQVNAQNKYINELEQQNLKLKSIIKRMLGPQV
FSMVNDLQGDEEIDLVKKLENDIQSKPFAVVMFLNNDISTAHRKEINNIM
REVSEKDAKQDVLMAHKLQPQNSAIPLKAFTTNLKGKRCNPGKNQDEEPY
IVCSCQYFKSFYLDRLGVPLLEDNPNQTDVLDVPAYPQIFSKALPIVEEA
LNVRVKHMKQCFNCGGEHHLNECTEPRDHNRIRENRNKFASKGPPKINFN
MDTDELDPRFKPFKPGVISVGLEEALGISLKEQLPPYIYKMRELGYPPAW
VRPVDDDGLKVYGADGNVIENADYEEGEIKPINIPDIVEYPGFNVPPPQG
VADEYEAMGAPKFNKTNADYDARRKRAQILGYFENEHGEPLAKKLKFDDS
VSMEIDENTVDLVDGKPPLPLIDVTARPPSPEHDTEESNKESTAESQDEE
VFADGEGGEETSGKDTATEQETEDESAVTEKEDESTDADSNGKTTRLSSS
TKDIDDTTYRHWFSQAFTSSKGLTYTMYTPPPQCLQNVKMSDLPKNPVIE
IDREPWKTSNVSWYFPLYGDLAAPTGTFDNIRTLLKDTNLKRKKRKPLK
Run BLAST on NCBI

transcript from alignment at sc0000011:190366..193179-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001644 ID=TCONS_00001644|Name=TCONS_00001644|organism=Clytia hemisphaerica|type=transcript|length=2814bp|location=Sequence derived from alignment at sc0000011:190366..193179- (Clytia hemisphaerica)
TTTGGTTTAAGATCAAAATTATAAATCAAAATGACTGAGACAAATTGTGA TGAAGATTATCTGTTTGCAAACTTTGATACGACTACAAAAGAAGACACCA TGGAAGATGGCGGTGGTGGAGGTGGAGGGAATGAAACAGCCACTGAAACA GAAGAGGAATATGTGCCAGCCCCAATCACTTCAAAGCCAAAGAAATCTAA AAAGAGTAAACGAACTGGAGGTGATTTAGACGAAGCTCAAGTTAATGCCC AAAATAAATACATCAACGAGCTGGAACAGCAAAATTTGAAGTTGAAATCT ATTATTAAACGTATGTTAGGTCCACAGGTGTTTTCCATGGTGAATGATTT ACAAGGAGATGAGGAGATAGATCTTGTAAAGAAACTGGAGAATGATATTC AGTCAAAACCCTTTGCTGTTGTCATGTTCCTAAACAATGATATTTCAACC GCTCATCGTAAGGAAATCAACAATATCATGCGCGAGGTCAGTGAAAAAGA TGCCAAACAAGACGTCTTGATGGCTCATAAATTACAACCACAGAACTCTG CTATTCCTCTAAAAGCATTTACTACTAATCTCAAAGGTAAACGTTGCAAC CCTGGTAAAAATCAGGATGAGGAACCTTACATTGTTTGTTCATGTCAGTA TTTTAAGAGTTTTTACTTAGATCGACTTGGTGTTCCACTGCTAGAAGATA ACCCAAACCAAACAGATGTATTAGATGTACCAGCCTATCCACAGATTTTT AGTAAAGCCTTACCCATTGTCGAAGAGGCTTTGAACGTGCGAGTCAAACA CATGAAACAGTGTTTCAACTGTGGTGGCGAGCATCATTTGAATGAATGCA CTGAACCCAGAGATCACAACCGGATACGCGAGAATCGTAACAAATTCGCC AGTAAAGGACCTCCTAAAATCAACTTCAACATGGACACTGATGAACTAGA TCCTCGCTTCAAACCATTCAAACCAGGGGTAATCAGTGTTGGCCTGGAAG AGGCCCTCGGTATCTCTCTTAAAGAACAGTTACCTCCTTACATCTATAAA ATGAGAGAGCTGGGCTATCCACCAGCTTGGGTGAGACCTGTAGATGATGA TGGATTGAAAGTGTATGGAGCTGATGGAAATGTCATCGAAAATGCTGATT ATGAAGAAGGAGAAATCAAACCTATCAATATCCCAGATATTGTTGAATAC CCAGGATTCAACGTTCCTCCACCACAGGGTATGCCAGATTGTTATTTTCA GTTTTGATTGTTTGTTTGATTATTTTGGACAGCTGTCTACAATTATACCA GATAATACCACTATTTTAGGTTTTCATTTTCTTAGGTACCTGAGCACACA TAAAATGAAATCGTACCTTACTATTCAAAAAATGCCGAATATTATACAAT AAATCTTTATATTTCTATGGTATTTCACTATCTTTCTTGCCAAATCTTAA GAACATCGTCCCTAGAACCTAAAAAGCATAATTTACAGCCTGCAACATTT TTCCTGATCAAAACAAAGTAACAAATTCAAAACAAATACAAAAATAGTTA ACTTCGTGCTCTTCACTCACTTACGTATAAATCTTAACTTCAAACGTAAC TCTCTCTCTTCTACAGGAGTGGCTGATGAATACGAAGCAATGGGAGCTCC TAAATTCAACAAAACAAACGCCGATTATGACGCCAGGCGGAAACGAGCGC AAATCCTGGGATATTTCGAAAACGAGCACGGCGAACCTCTCGCCAAAAAA TTGAAATTCGACGATTCTGTCAGTATGGAAATTGATGAAAATACGGTTGA TCTTGTCGACGGGAAACCACCACTTCCGCTGATTGACGTGACCGCTCGTC CGCCATCACCGGAACATGATACGGAAGAATCAAACAAAGAATCAACTGCT GAAAGTCAAGACGAAGAAGTGTTCGCTGATGGAGAAGGCGGCGAAGAAAC GAGTGGAAAAGACACGGCAACCGAACAAGAAACGGAAGACGAAAGTGCCG TGACTGAAAAAGAAGATGAATCAACGGATGCTGATAGTAACGGGAAAACA ACGCGTCTGAGTTCTTCCACCAAGGACATCGATGATACAACTTACCGACA TTGGTTTTCACAAGCGTTCACAAGTAGTAAAGGACTCACATACACGATGT ATACACCTCCCCCGCAATGTTTACAAAACGTCAAAATGTCAGACTTACCT AAAAACCCGGTCATTGAAATCGACCGTGAGCCGTGGAAAACGTCGAATGT CAGCTGGTACTTTCCGCTTTACGGTGATCTGGCCGCCCCCACCGGTACCT TTGATAACATACGGACATTGCTGAAAGACACGAATCTCAAACGAAAGAAA CGAAAGCCTTTGAAGTGAAAGATGTATCTTTCATGTTCTTCGTGTTTCTA AGAGAGACAACTTCAACTTTTCCCTGCTGGAAATAAAGAGGTAACTAAAA CGACTCATCTAAAAACTAAAAACTTCATCTTACTTACGGAGTTTTGCAGT TTCCCCTGATGTATATCATGAGATCCTAAGGTGTATGGTTTACCGTAATG ATAATGACAGATATGTAAATTATTAGACGATTCGAATGATGTAACAATGA TAAATGTGAGTTTCACTGTATTCTCATTCATTCTTTCGGAACGTAGGACA ATAGAAAAATAAAATGTGTCTGGGAAGAAAGCGCAACAAAATCCATAATG ATGAAAATCCTCATAATTTAAGCAAAATTTGGTGAACTAAAAAACTATTA ATTGCCTTGGGAATGGAACAGGGAAGCTAGGTCGTATTGTATGAAATCTT TTTATCTGGACAAT

Coding sequence (CDS) from alignment at sc0000011:190366..193179-

>TCONS_00001644 ID=TCONS_00001644|Name=TCONS_00001644|organism=Clytia hemisphaerica|type=CDS|length=3900bp|location=Sequence derived from alignment at sc0000011:190366..193179- (Clytia hemisphaerica)
GAGTGGCTGATGAATACGAAGCAATGGGAGCTCCTAAATTCAACAAAACA
AACGCCGATTATGACGCCAGGCGGAAACGAGCGCAAATCCTGGGATATTT
CGAAAACGAGCACGGCGAACCTCTCGCCAAAAAATTGAAATTCGACGATT
CTGTCAGTATGGAAATTGATGAAAATACGGTTGATCTTGTCGACGGGAAA
CCACCACTTCCGCTGATTGACGTGACCGCTCGTCCGCCATCACCGGAACA
TGATACGGAAGAATCAAACAAAGAATCAACTGCTGAAAGTCAAGACGAAG
AAGTGTTCGCTGATGGAGAAGGCGGCGAAGAAACGAGTGGAAAAGACACG
GCAACCGAACAAGAAACGGAAGACGAAAGTGCCGTGACTGAAAAAGAAGA
TGAATCAACGGATGCTGATAGTAACGGGAAAACAACGCGTCTGAGTTCTT
CCACCAAGGACATCGATGATACAACTTACCGACATTGGTTTTCACAAGCG
TTCACAAGTAGTAAAGGACTCACATACACGATGTATACACCTCCCCCGCA
ATGTTTACAAAACGTCAAAATGTCAGACTTACCTAAAAACCCGGTCATTG
AAATCGACCGTGAGCCGTGGAAAACGTCGAATGTCAGCTGGTACTTTCCG
CTTTACGGTGATCTGGCCGCCCCCACCGGTACCTTTGATAACATACGGAC
ATTGCTGAAAGACACGAATCTCAAACGAAAGAAACGAAAGCCTTTGAAGT
GAATGACTGAGACAAATTGTGATGAAGATTATCTGTTTGCAAACTTTGAT
ACGACTACAAAAGAAGACACCATGGAAGATGGCGGTGGTGGAGGTGGAGG
GAATGAAACAGCCACTGAAACAGAAGAGGAATATGTGCCAGCCCCAATCA
CTTCAAAGCCAAAGAAATCTAAAAAGAGTAAACGAACTGGAGGTGATTTA
GACGAAGCTCAAGTTAATGCCCAAAATAAATACATCAACGAGCTGGAACA
GCAAAATTTGAAGTTGAAATCTATTATTAAACGTATGTTAGGTCCACAGG
TGTTTTCCATGGTGAATGATTTACAAGGAGATGAGGAGATAGATCTTGTA
AAGAAACTGGAGAATGATATTCAGTCAAAACCCTTTGCTGTTGTCATGTT
CCTAAACAATGATATTTCAACCGCTCATCGTAAGGAAATCAACAATATCA
TGCGCGAGGTCAGTGAAAAAGATGCCAAACAAGACGTCTTGATGGCTCAT
AAATTACAACCACAGAACTCTGCTATTCCTCTAAAAGCATTTACTACTAA
TCTCAAAGGTAAACGTTGCAACCCTGGTAAAAATCAGGATGAGGAACCTT
ACATTGTTTGTTCATGTCAGTATTTTAAGAGTTTTTACTTAGATCGACTT
GGTGTTCCACTGCTAGAAGATAACCCAAACCAAACAGATGTATTAGATGT
ACCAGCCTATCCACAGATTTTTAGTAAAGCCTTACCCATTGTCGAAGAGG
CTTTGAACGTGCGAGTCAAACACATGAAACAGTGTTTCAACTGTGGTGGC
GAGCATCATTTGAATGAATGCACTGAACCCAGAGATCACAACCGGATACG
CGAGAATCGTAACAAATTCGCCAGTAAAGGACCTCCTAAAATCAACTTCA
ACATGGACACTGATGAACTAGATCCTCGCTTCAAACCATTCAAACCAGGG
GTAATCAGTGTTGGCCTGGAAGAGGCCCTCGGTATCTCTCTTAAAGAACA
GTTACCTCCTTACATCTATAAAATGAGAGAGCTGGGCTATCCACCAGCTT
GGGTGAGACCTGTAGATGATGATGGATTGAAAGTGTATGGAGCTGATGGA
AATGTCATCGAAAATGCTGATTATGAAGAAGGAGAAATCAAACCTATCAA
TATCCCAGATATTGTTGAATACCCAGGATTCAACGTTCCTCCACCACAGG
GAGTGGCTGATGAATACGAAGCAATGGGAGCTCCTAAATTCAACAAAACA
AACGCCGATTATGACGCCAGGCGGAAACGAGCGCAAATCCTGGGATATTT
CGAAAACGAGCACGGCGAACCTCTCGCCAAAAAATTGAAATTCGACGATT
CTGTCAGTATGGAAATTGATGAAAATACGGTTGATCTTGTCGACGGGAAA
CCACCACTTCCGCTGATTGACGTGACCGCTCGTCCGCCATCACCGGAACA
TGATACGGAAGAATCAAACAAAGAATCAACTGCTGAAAGTCAAGACGAAG
AAGTGTTCGCTGATGGAGAAGGCGGCGAAGAAACGAGTGGAAAAGACACG
GCAACCGAACAAGAAACGGAAGACGAAAGTGCCGTGACTGAAAAAGAAGA
TGAATCAACGGATGCTGATAGTAACGGGAAAACAACGCGTCTGAGTTCTT
CCACCAAGGACATCGATGATACAACTTACCGACATTGGTTTTCACAAGCG
TTCACAAGTAGTAAAGGACTCACATACACGATGTATACACCTCCCCCGCA
ATGTTTACAAAACGTCAAAATGTCAGACTTACCTAAAAACCCGGTCATTG
AAATCGACCGTGAGCCGTGGAAAACGTCGAATGTCAGCTGGTACTTTCCG
CTTTACGGTGATCTGGCCGCCCCCACCGGTACCTTTGATAACATACGGAC
ATTGCTGAAAGACACGAATCTCAAACGAAAGAAACGAAAGCCTTTGAAGT
GAATGACTGAGACAAATTGTGATGAAGATTATCTGTTTGCAAACTTTGAT
ACGACTACAAAAGAAGACACCATGGAAGATGGCGGTGGTGGAGGTGGAGG
GAATGAAACAGCCACTGAAACAGAAGAGGAATATGTGCCAGCCCCAATCA
CTTCAAAGCCAAAGAAATCTAAAAAGAGTAAACGAACTGGAGGTGATTTA
GACGAAGCTCAAGTTAATGCCCAAAATAAATACATCAACGAGCTGGAACA
GCAAAATTTGAAGTTGAAATCTATTATTAAACGTATGTTAGGTCCACAGG
TGTTTTCCATGGTGAATGATTTACAAGGAGATGAGGAGATAGATCTTGTA
AAGAAACTGGAGAATGATATTCAGTCAAAACCCTTTGCTGTTGTCATGTT
CCTAAACAATGATATTTCAACCGCTCATCGTAAGGAAATCAACAATATCA
TGCGCGAGGTCAGTGAAAAAGATGCCAAACAAGACGTCTTGATGGCTCAT
AAATTACAACCACAGAACTCTGCTATTCCTCTAAAAGCATTTACTACTAA
TCTCAAAGGTAAACGTTGCAACCCTGGTAAAAATCAGGATGAGGAACCTT
ACATTGTTTGTTCATGTCAGTATTTTAAGAGTTTTTACTTAGATCGACTT
GGTGTTCCACTGCTAGAAGATAACCCAAACCAAACAGATGTATTAGATGT
ACCAGCCTATCCACAGATTTTTAGTAAAGCCTTACCCATTGTCGAAGAGG
CTTTGAACGTGCGAGTCAAACACATGAAACAGTGTTTCAACTGTGGTGGC
GAGCATCATTTGAATGAATGCACTGAACCCAGAGATCACAACCGGATACG
CGAGAATCGTAACAAATTCGCCAGTAAAGGACCTCCTAAAATCAACTTCA
ACATGGACACTGATGAACTAGATCCTCGCTTCAAACCATTCAAACCAGGG
GTAATCAGTGTTGGCCTGGAAGAGGCCCTCGGTATCTCTCTTAAAGAACA
GTTACCTCCTTACATCTATAAAATGAGAGAGCTGGGCTATCCACCAGCTT
GGGTGAGACCTGTAGATGATGATGGATTGAAAGTGTATGGAGCTGATGGA
AATGTCATCGAAAATGCTGATTATGAAGAAGGAGAAATCAAACCTATCAA
TATCCCAGATATTGTTGAATACCCAGGATTCAACGTTCCTCCACCACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000857XLOC_000857Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001644-proteinTCONS_00001644-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001644-exon-sc0000011-1575043694:191952..193179TCONS_00001644-exon-sc0000011-1575043694:191952..193179Clytia hemisphaericaexon
TCONS_00001644-exon-sc0000011-1575043694:190366..191563TCONS_00001644-exon-sc0000011-1575043694:190366..191563Clytia hemisphaericaexon
TCONS_00001644-exon-sc0000011-1510915933:191952..193179TCONS_00001644-exon-sc0000011-1510915933:191952..193179Clytia hemisphaericaexon
TCONS_00001644-exon-sc0000011-1510915933:190366..191563TCONS_00001644-exon-sc0000011-1510915933:190366..191563Clytia hemisphaericaexon
TCONS_00001644-exon-sc0000011-1491911889:191952..193179TCONS_00001644-exon-sc0000011-1491911889:191952..193179Clytia hemisphaericaexon
TCONS_00001644-exon-sc0000011-1491911889:190366..191563TCONS_00001644-exon-sc0000011-1491911889:190366..191563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:190366..193179 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.80142 8.48915 2.79032 1.64857 65.777 49.1982 26.6431 28.2944 14.2268 17.9729 11.8029 7.53495 6.93912 6.47687 8.19629 8.23029 16.2537 9.78885 2.65373 3.16856 8.1848 9.0788 25.0087 20.4845 14.4495 19.9187 4.47632 3.48926 16.6604 18.6754
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006568PSP_pro-rich
Blast
BLAST of TCONS_00001644 vs. Swiss-Prot (Human)
Match: ZCHC8 (Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens GN=ZCCHC8 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 1.363e-46
Identity = 117/351 (33.33%), Postives = 185/351 (52.71%), Query Frame = 1
Query:  262 INELEQQNLKLKSIIKRMLGPQVFSMVNDLQGDEEIDLVKKLENDIQSKPFAVVMFLNNDISTAHRKEI----NNIMREVSEKDAKQDVLMAHKLQPQNSAIPLKAFTTNLKGKRCNPGKNQDEEPYIVCSCQYFKSFYLDRLGVPLLEDNPNQTDVLDVPAYPQIFSKALPIVEEALNVRVKHMK-QCFNCGG-EHHLNECTEPRDHNRIRENRNKFASKGPPKINFNMD----TDELDPRFKPFKPGVISVGLEEALGISLKEQLPPYIYKMRELGYPPAWVR--PVDDDGLKVY-GADGNVIENADYEEGEIK-----PINIPDIVEYPGFNVPPPQGVADEYEAMGA 1260
            I +L  +N +LK  +  +  P    +VND + D                P   ++F+NN IS  + +EI    +N+++   E+        +  L PQ S+I L+    + K +     KN  E   +V S  YF +F LD+LG PLL +NP  ++  ++P Y Q+FS  + +  + + V+ K  K  CFNCG  EH + +C  PR+  RI E R ++        N N       +E++ RF  FKPGVIS  L++ALG++ K  LPP+IY+MR+LGYPP W++   +++ GL +Y G DG    + + E GEI+       ++  +V YPGFN+  P+G+ DE+   G+
Sbjct:   60 IEQLRAENQELKRKLNILTRPSGI-LVNDTKLD---------------GPILQILFMNNAISKQYHQEIEEFVSNLVKRFEEQQKNDVEKTSFNLLPQPSSIVLEE---DHKVEESCAIKNNKEAFSVVGSVLYFTNFCLDKLGQPLLNENPQLSEGWEIPKYHQVFSHIVSLEGQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDK-SLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGT---DGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGS 387          
The following BLAST results are available for this feature:
BLAST of TCONS_00001644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZCHC81.363e-4633.33Zinc finger CCHC domain-containing protein 8 OS=Ho... [more]
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