TCONS_00001644-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001644-protein
Unique Name	TCONS_00001644-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	649

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001644-protein ID=TCONS_00001644-protein|Name=TCONS_00001644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp
MTETNCDEDYLFANFDTTTKEDTMEDGGGGGGGNETATETEEEYVPAPIT
SKPKKSKKSKRTGGDLDEAQVNAQNKYINELEQQNLKLKSIIKRMLGPQV
FSMVNDLQGDEEIDLVKKLENDIQSKPFAVVMFLNNDISTAHRKEINNIM
REVSEKDAKQDVLMAHKLQPQNSAIPLKAFTTNLKGKRCNPGKNQDEEPY
IVCSCQYFKSFYLDRLGVPLLEDNPNQTDVLDVPAYPQIFSKALPIVEEA
LNVRVKHMKQCFNCGGEHHLNECTEPRDHNRIRENRNKFASKGPPKINFN
MDTDELDPRFKPFKPGVISVGLEEALGISLKEQLPPYIYKMRELGYPPAW
VRPVDDDGLKVYGADGNVIENADYEEGEIKPINIPDIVEYPGFNVPPPQG
VADEYEAMGAPKFNKTNADYDARRKRAQILGYFENEHGEPLAKKLKFDDS
VSMEIDENTVDLVDGKPPLPLIDVTARPPSPEHDTEESNKESTAESQDEE
VFADGEGGEETSGKDTATEQETEDESAVTEKEDESTDADSNGKTTRLSSS
TKDIDDTTYRHWFSQAFTSSKGLTYTMYTPPPQCLQNVKMSDLPKNPVIE
IDREPWKTSNVSWYFPLYGDLAAPTGTFDNIRTLLKDTNLKRKKRKPLK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000857	XLOC_000857	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001644	TCONS_00001644	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006568	PSP_pro-rich

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006568	PSP, proline-rich	SMART	SM00581	testneu	coord: 310..361 e-value: 2.0E-12 score: 57.3
IPR006568	PSP, proline-rich	PFAM	PF04046	PSP	coord: 314..353 e-value: 9.2E-14 score: 51.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 458..551
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66

Blast

[Close]

BLAST of TCONS_00001644-protein vs. Swiss-Prot (Human)
Match: ZCHC8 (Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens GN=ZCCHC8 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 1.565e-48
Identity = 123/391 (31.46%), Postives = 202/391 (51.66%), Query Frame = 0

Query:   42 EEYVPAPITSKPKKSKKSKRTGGDLDEAQVNAQ----NKYINELEQQNLKLKSIIKRMLGPQVFSMVNDLQGDEEIDLVKKLENDIQSKPFAVVMFLNNDISTAHRKEI----NNIMREVSEKDAKQDVLMAHKLQPQNSAIPLKAFTTNLKGKRCNPGKNQDEEPYIVCSCQYFKSFYLDRLGVPLLEDNPNQTDVLDVPAYPQIFSKALPIVEEALNVRVKHMK-QCFNCGG-EHHLNECTEPRDHNRIRENRNKFASKGPPKINFNMD----TDELDPRFKPFKPGVISVGLEEALGISLKEQLPPYIYKMRELGYPPAWVR--PVDDDGLKVY-GADGNVIENADYEEGEIK-----PINIPDIVEYPGFNVPPPQGVADEYEAMGA 410
            EE +P P+ ++ K     +     + +A++  +     + I +L  +N +LK  +  +  P    +VND + D                P   ++F+NN IS  + +EI    +N+++   E+        +  L PQ S+I L+    + K +     KN  E   +V S  YF +F LD+LG PLL +NP  ++  ++P Y Q+FS  + +  + + V+ K  K  CFNCG  EH + +C  PR+  RI E R ++        N N       +E++ RF  FKPGVIS  L++ALG++ K  LPP+IY+MR+LGYPP W++   +++ GL +Y G DG    + + E GEI+       ++  +V YPGFN+  P+G+ DE+   G+
Sbjct:   20 EESIPKPVHTRFKDDDGDEEDENGVGDAELRERLRQCEETIEQLRAENQELKRKLNILTRPSGI-LVNDTKLD---------------GPILQILFMNNAISKQYHQEIEEFVSNLVKRFEEQQKNDVEKTSFNLLPQPSSIVLEE---DHKVEESCAIKNNKEAFSVVGSVLYFTNFCLDKLGQPLLNENPQLSEGWEIPKYHQVFSHIVSLEGQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQNFQQRYHAEEVEERFGRFKPGVISEELQDALGVTDK-SLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGKDGT---DGETEVGEIQQNKSVTYDLSKLVNYPGFNISTPRGIPDEWRIFGS 387

The following BLAST results are available for this feature:

BLAST of TCONS_00001644-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001644-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZCHC8	1.565e-48	31.46	Zinc finger CCHC domain-containing protein 8 OS=Ho...	[more]

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TCONS_00001644-protein (polypeptide) - C. hemisphaerica