TCONS_00001641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001641
Unique NameTCONS_00001641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001641 ID=TCONS_00001641|Name=TCONS_00001641|organism=Clytia hemisphaerica|type=transcript|length=456bp
TTCAGATATTCAAGAAATGCATGACCAAACCTATCGAAAGACAAAGGGAA
GAAGAAATCTTATCATGCCTCTCTCTGATAGCATTGATGTTGAAATATGA
CGACGTTCAAAAGGATGGCTCAAAGGAGCGACTACACCACATTTGGAGCT
AtgtgtttcaatgttcattacCGGAGCAGAGTGATGCGGTGCGCTATAAC
ATGGCGGGAATGTTGTGTTTATTGGCAGAACATGCATGCTTGGAACCAAt
CAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTGAACGACTGTG
ACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAAAGCGTATTCT
TCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTGGTTTTAAAAC
TCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCACACTTATAGTG
AATATC
Run BLAST on NCBI

protein sequence of TCONS_00001641-protein

>TCONS_00001641-protein ID=TCONS_00001641-protein|Name=TCONS_00001641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
QIFKKCMTKPIERQREEEILSCLSLIALMLKYDDVQKDGSKERLHHIWSY
VFQCSLPEQSDAVRYNMAGMLCLLAEHACLEPINHYQLYYCALNLLNDCD
ADIRRHAAQEIHKAYSSNGNRKFLPSLCPGFKTLLYFSLHCFRINHTYSE
Y
Run BLAST on NCBI

transcript from alignment at sc0000011:120074..123332-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001641 ID=TCONS_00001641|Name=TCONS_00001641|organism=Clytia hemisphaerica|type=transcript|length=3259bp|location=Sequence derived from alignment at sc0000011:120074..123332- (Clytia hemisphaerica)
TTCAGATATTCAAGAAATGCATGACCAAACCTATCGAAAGACAAAGGTAC
TTAATGTTATATTTTACAATACACCTTTTGACCGTAGCCGCCAATTGCAA
TATTTTGTCCGTTTTACCACCCTAAAACCGTCCCAGTCTTTTTTCGCACC
TATAGACAAAAGAAAAAGGATTGGATCGAGTTTAGGGTGATAATTAAATA
CTTTAATGGGATAAATTTTCGCGGGGATTAAATTTCGCGGTTGAGCTCAT
CCGCGAAATTTTAAGATTTCGCGGGGATTAAATTTCGCGGTTGAGCTCAT
CCGCGAAATTTTAAGATTTCGCGGGGATTAATTTTCGCGGATGAGGGCTT
TCCTGATTTTTCGCGGGGATTTAATTTCGCGGATTGGGGTACAAATTAAA
ATTTTTGAAAAGAATCAAAACATTGAAATAAAATTTTTTTTCAAGTAATA
AGAAGGTGTTTTGGAATAGGGCGAGGAGATATGTATTACAACTATCAAAA
GTTGAATTTGAACTTCCATGGTGCAGGGGGGGGGTCGGTACTAAAATCTC
AGACATACAGGAGTACTAAAAGGATTTTCGCTAATTTTTAACATACCCCC
ACCTATTTTTTCGAAAATGTTATTTTAGTACACATGTACTAAAATTATTT
TGAACAATTTAACATAGATACCACCCATTTTTTGCCCTTTTACGGCTTTA
AATTTACCAAAATGGGGTCATTGTTACAAACCTAGTCGAATTTAGTGCAT
CAATCTGCAAAATAATATAATTTTATTACTAAACTGTGCTGAACTGTACA
TTTAACTAAAAATTTGGAAAAGTTCTGAAAGATTTCTGCAGATTTTTTCG
GAAATTCCTGAAAAAAAAAATCAAATTTTTTCCAAAATTGTTAAAAAAAA
ACTCCATTTTGGCTGATTTTAGAACAAAATACTAAGATTTTTCAAAAATG
TCTTTAAGGTACCACCCACCCTTTTTGGTATTTTAGTACACATGGTAACT
AAAATCATTTTTGAGCTTTTTTACAGTACCACCACGTCACTAAATGTCAT
GATGTCTGAGATTTTAGTACCGACCCCCCTGCTGCAAATATTTCAAAATT
CGCGAATTGACCGTAGAAAAGATTAGGGGTAAAGGGACCCAATGATGTCA
CAGATTTTGGAAAAAAATTTAAATGAAATGTGATATCTGGAGTTTGAAAG
GGAATTGGGAGGTTGTTATAAACCCCTCATCATCAAGGATCGAAAATTTT
ATATAATATGGGCGGATAAGATGGGAGGGTTAGAGGCTTGAGTATGACTT
TAAAATTTGGCTGGATTTTTGTCAGTTGATGACGTCATCAAAACAGAAAA
AATGGGATATCTCAAGATTTAAAAAAAGTTAGAGGATTGTTGACCCCATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGGGCCTTTTTCAAATTTCCAATGGGACTTATTTTC
GCGGATGACACCCAAATCCGCGAAATCCGCGAAAATTAATCCCCGCGAAA
ATTTATCCCATTAAAGTAATACAATGGCACGCGTCTGACCGCGCGACTAC
GGTCGAAAAGGTGTATAGGCCACCAATCGTATTCATTCGAGAAAGATAAA
TTCCACATATAAACTTATCAGATCACTAGACTGCGGTTTAATGTGGGTGT
AGTAAGAACTTTTACCTGAAGCAATTTCGAAGCAAGATCTTCTCTTATAT
ATAAGTGAGTGATCTGATACTAGTTTTCTATCACTGAGTGATATATCTAC
CCTTTAGCAATTCGAATCTGACTACAGTATAGGAGAATTGTAAAAAATCG
CAAAATCTGCGCTATTCTTTTATCACAGGGAAGAAGAAATCTTATCATGC
CTCTCTCTGATAGCATTGATGTTGAAATATGACGACGTTCAAAAGGTATT
GAATCTTTTGATTGACCTTGTTTTAAAAAAAGCTGTAAAAGTTTCATTTA
ACGGAACCAACTCCATTAAAATCTGAAGTCATTACAATTATTCTCTTAGA
ACTTTTCCTCCTCTTGGGTAATGAGCGAGTGTGTGTATTTTTACTCTTGA
GGACGGTGGAGTGACTGAAACGATTTGGAAGGACCCGCAATTTTGACCCG
CAACATCGAAGACGGTAAAAGTTCTTGTTGACCGTTGTCCTCAGTTGATC
AGGATCTAGACAAATCAAAATCTAACCGACCCCGTCACAAAAAAAACATA
GACCTGCTACTTGCTCGAGGTACGCAGTTTATATTTAATTGAAATGAATA
GTTAGATTTAAAATTTACCTTTTAGGATGGCTCAAAGGAGCGACTACACC
ACATTTGGAGCTATGTGTTTCAATGTTCATTACCGGAGCAGAGTGATGCG
GTGCGCTATAACATGGCGGGAATGTTGTGTTTATTGGCAGAACATGCATG
CTTGGAACCAAGTAAGTCATTTATTTTAGTTCAAGCTGGCCAAAAATTAT
TTTAATTGATTTTAAATTTTCTATAAGAACACGAGACTCGATTTTGCTAA
AAAAAGAACAACTGGGAAAACATCAACCAATCTTAGAGACTTAACTGCCT
CCATGCTACCCTCTGAACCTCTGATATTGCTGGTTGTAATCAGTGTCAAA
AGAAAGCGTGAATGGCATAGTAGAATTGGCCGTTAAGAACAATCGAAGTT
CACATTACAGAAATTAGATTAATTTTTCTTCGTTTTTTTTTTTACTTGAT
AGTCAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTGAACGACT
GTGACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAAAGCGTAT
TCTTCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTGGTTTTAA
AACTCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCACACTTATA
GTGAATATC

Coding sequence (CDS) from alignment at sc0000011:120074..123332-

>TCONS_00001641 ID=TCONS_00001641|Name=TCONS_00001641|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0000011:120074..123332- (Clytia hemisphaerica)
TCAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTGAACGACTGT
GACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAAAGCGTATTC
TTCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTGGTTTTAAAA
CTCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCACACTTATAGT
GAATATGATGGCTCAAAGGAGCGACTACACCACATTTGGAGCTATGTGTT
TCAATGTTCATTACCGGAGCAGAGTGATGCGGTGCGCTATAACATGGCGG
GAATGTTGTGTTTATTGGCAGAACATGCATGCTTGGAACCAAGGAAGAAG
AAATCTTATCATGCCTCTCTCTGATAGCATTGATGTTGAAATATGACGAC
GTTCAAAAGCAGATATTCAAGAAATGCATGACCAAACCTATCGAAAGACA
AAGTCAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTGAACGAC
TGTGACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAAAGCGTA
TTCTTCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTGGTTTTA
AAACTCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCACACTTAT
AGTGAATATGATGGCTCAAAGGAGCGACTACACCACATTTGGAGCTATGT
GTTTCAATGTTCATTACCGGAGCAGAGTGATGCGGTGCGCTATAACATGG
CGGGAATGTTGTGTTTATTGGCAGAACATGCATGCTTGGAACCAAGGAAG
AAGAAATCTTATCATGCCTCTCTCTGATAGCATTGATGTTGAAATATGAC
GACGTTCAAAAGCAGATATTCAAGAAATGCATGACCAAACCTATCGAAAG
ACAAAGTCAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTGAAC
GACTGTGACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAAAGC
GTATTCTTCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTGGTT
TTAAAACTCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCACACT
TATAGTGAATATGATGGCTCAAAGGAGCGACTACACCACATTTGGAGCTA
TGTGTTTCAATGTTCATTACCGGAGCAGAGTGATGCGGTGCGCTATAACA
TGGCGGGAATGTTGTGTTTATTGGCAGAACATGCATGCTTGGAACCAAGG
AAGAAGAAATCTTATCATGCCTCTCTCTGATAGCATTGATGTTGAAATAT
GACGACGTTCAAAAGCAGATATTCAAGAAATGCATGACCAAACCTATCGA
AAGACAAAGTCAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTG
AACGACTGTGACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAA
AGCGTATTCTTCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTG
GTTTTAAAACTCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCAC
ACTTATAGTGAATATGATGGCTCAAAGGAGCGACTACACCACATTTGGAG
CTATGTGTTTCAATGTTCATTACCGGAGCAGAGTGATGCGGTGCGCTATA
ACATGGCGGGAATGTTGTGTTTATTGGCAGAACATGCATGCTTGGAACCA
AGGAAGAAGAAATCTTATCATGCCTCTCTCTGATAGCATTGATGTTGAAA
TATGACGACGTTCAAAAGCAGATATTCAAGAAATGCATGACCAAACCTAT
CGAAAGACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000855XLOC_000855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001641-exon-sc0000011-1575043694:123287..123332TCONS_00001641-exon-sc0000011-1575043694:123287..123332Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1575043694:121088..121154TCONS_00001641-exon-sc0000011-1575043694:121088..121154Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1575043694:120572..120707TCONS_00001641-exon-sc0000011-1575043694:120572..120707Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1575043694:120074..120280TCONS_00001641-exon-sc0000011-1575043694:120074..120280Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1510915933:123287..123332TCONS_00001641-exon-sc0000011-1510915933:123287..123332Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1510915933:121088..121154TCONS_00001641-exon-sc0000011-1510915933:121088..121154Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1510915933:120572..120707TCONS_00001641-exon-sc0000011-1510915933:120572..120707Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1510915933:120074..120280TCONS_00001641-exon-sc0000011-1510915933:120074..120280Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1491911889:123287..123332TCONS_00001641-exon-sc0000011-1491911889:123287..123332Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1491911889:121088..121154TCONS_00001641-exon-sc0000011-1491911889:121088..121154Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1491911889:120572..120707TCONS_00001641-exon-sc0000011-1491911889:120572..120707Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1491911889:120074..120280TCONS_00001641-exon-sc0000011-1491911889:120074..120280Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001641-proteinTCONS_00001641-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:120074..123332 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43635	1.54073	0.650522	0.477325	20.7258	16.9901	9.04858	12.2746	7.98851	11.2444	8.00366	7.65279	7.92873	7.0436	8.56385	11.1159	13.3704	10.2782	4.12254	4.31394	8.61019	7.72212	11.1988	10.4808	3.85535	5.23003	5.31769	3.36307	11.6379	9.90805
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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