TCONS_00001641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001641
Unique NameTCONS_00001641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001641 ID=TCONS_00001641|Name=TCONS_00001641|organism=Clytia hemisphaerica|type=transcript|length=456bp
TTCAGATATTCAAGAAATGCATGACCAAACCTATCGAAAGACAAAGGGAA
GAAGAAATCTTATCATGCCTCTCTCTGATAGCATTGATGTTGAAATATGA
CGACGTTCAAAAGGATGGCTCAAAGGAGCGACTACACCACATTTGGAGCT
AtgtgtttcaatgttcattacCGGAGCAGAGTGATGCGGTGCGCTATAAC
ATGGCGGGAATGTTGTGTTTATTGGCAGAACATGCATGCTTGGAACCAAt
CAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTGAACGACTGTG
ACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAAAGCGTATTCT
TCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTGGTTTTAAAAC
TCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCACACTTATAGTG
AATATC
Run BLAST on NCBI

protein sequence of TCONS_00001641-protein

>TCONS_00001641-protein ID=TCONS_00001641-protein|Name=TCONS_00001641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
QIFKKCMTKPIERQREEEILSCLSLIALMLKYDDVQKDGSKERLHHIWSY
VFQCSLPEQSDAVRYNMAGMLCLLAEHACLEPINHYQLYYCALNLLNDCD
ADIRRHAAQEIHKAYSSNGNRKFLPSLCPGFKTLLYFSLHCFRINHTYSE
Y
Run BLAST on NCBI

transcript from alignment at sc0000011:120074..123332-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001641 ID=TCONS_00001641|Name=TCONS_00001641|organism=Clytia hemisphaerica|type=transcript|length=3259bp|location=Sequence derived from alignment at sc0000011:120074..123332- (Clytia hemisphaerica)
TTCAGATATTCAAGAAATGCATGACCAAACCTATCGAAAGACAAAGGTAC TTAATGTTATATTTTACAATACACCTTTTGACCGTAGCCGCCAATTGCAA TATTTTGTCCGTTTTACCACCCTAAAACCGTCCCAGTCTTTTTTCGCACC TATAGACAAAAGAAAAAGGATTGGATCGAGTTTAGGGTGATAATTAAATA CTTTAATGGGATAAATTTTCGCGGGGATTAAATTTCGCGGTTGAGCTCAT CCGCGAAATTTTAAGATTTCGCGGGGATTAAATTTCGCGGTTGAGCTCAT CCGCGAAATTTTAAGATTTCGCGGGGATTAATTTTCGCGGATGAGGGCTT TCCTGATTTTTCGCGGGGATTTAATTTCGCGGATTGGGGTACAAATTAAA ATTTTTGAAAAGAATCAAAACATTGAAATAAAATTTTTTTTCAAGTAATA AGAAGGTGTTTTGGAATAGGGCGAGGAGATATGTATTACAACTATCAAAA GTTGAATTTGAACTTCCATGGTGCAGGGGGGGGGTCGGTACTAAAATCTC AGACATACAGGAGTACTAAAAGGATTTTCGCTAATTTTTAACATACCCCC ACCTATTTTTTCGAAAATGTTATTTTAGTACACATGTACTAAAATTATTT TGAACAATTTAACATAGATACCACCCATTTTTTGCCCTTTTACGGCTTTA AATTTACCAAAATGGGGTCATTGTTACAAACCTAGTCGAATTTAGTGCAT CAATCTGCAAAATAATATAATTTTATTACTAAACTGTGCTGAACTGTACA TTTAACTAAAAATTTGGAAAAGTTCTGAAAGATTTCTGCAGATTTTTTCG GAAATTCCTGAAAAAAAAAATCAAATTTTTTCCAAAATTGTTAAAAAAAA ACTCCATTTTGGCTGATTTTAGAACAAAATACTAAGATTTTTCAAAAATG TCTTTAAGGTACCACCCACCCTTTTTGGTATTTTAGTACACATGGTAACT AAAATCATTTTTGAGCTTTTTTACAGTACCACCACGTCACTAAATGTCAT GATGTCTGAGATTTTAGTACCGACCCCCCTGCTGCAAATATTTCAAAATT CGCGAATTGACCGTAGAAAAGATTAGGGGTAAAGGGACCCAATGATGTCA CAGATTTTGGAAAAAAATTTAAATGAAATGTGATATCTGGAGTTTGAAAG GGAATTGGGAGGTTGTTATAAACCCCTCATCATCAAGGATCGAAAATTTT ATATAATATGGGCGGATAAGATGGGAGGGTTAGAGGCTTGAGTATGACTT TAAAATTTGGCTGGATTTTTGTCAGTTGATGACGTCATCAAAACAGAAAA AATGGGATATCTCAAGATTTAAAAAAAGTTAGAGGATTGTTGACCCCATN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNTGGGCCTTTTTCAAATTTCCAATGGGACTTATTTTC GCGGATGACACCCAAATCCGCGAAATCCGCGAAAATTAATCCCCGCGAAA ATTTATCCCATTAAAGTAATACAATGGCACGCGTCTGACCGCGCGACTAC GGTCGAAAAGGTGTATAGGCCACCAATCGTATTCATTCGAGAAAGATAAA TTCCACATATAAACTTATCAGATCACTAGACTGCGGTTTAATGTGGGTGT AGTAAGAACTTTTACCTGAAGCAATTTCGAAGCAAGATCTTCTCTTATAT ATAAGTGAGTGATCTGATACTAGTTTTCTATCACTGAGTGATATATCTAC CCTTTAGCAATTCGAATCTGACTACAGTATAGGAGAATTGTAAAAAATCG CAAAATCTGCGCTATTCTTTTATCACAGGGAAGAAGAAATCTTATCATGC CTCTCTCTGATAGCATTGATGTTGAAATATGACGACGTTCAAAAGGTATT GAATCTTTTGATTGACCTTGTTTTAAAAAAAGCTGTAAAAGTTTCATTTA ACGGAACCAACTCCATTAAAATCTGAAGTCATTACAATTATTCTCTTAGA ACTTTTCCTCCTCTTGGGTAATGAGCGAGTGTGTGTATTTTTACTCTTGA GGACGGTGGAGTGACTGAAACGATTTGGAAGGACCCGCAATTTTGACCCG CAACATCGAAGACGGTAAAAGTTCTTGTTGACCGTTGTCCTCAGTTGATC AGGATCTAGACAAATCAAAATCTAACCGACCCCGTCACAAAAAAAACATA GACCTGCTACTTGCTCGAGGTACGCAGTTTATATTTAATTGAAATGAATA GTTAGATTTAAAATTTACCTTTTAGGATGGCTCAAAGGAGCGACTACACC ACATTTGGAGCTATGTGTTTCAATGTTCATTACCGGAGCAGAGTGATGCG GTGCGCTATAACATGGCGGGAATGTTGTGTTTATTGGCAGAACATGCATG CTTGGAACCAAGTAAGTCATTTATTTTAGTTCAAGCTGGCCAAAAATTAT TTTAATTGATTTTAAATTTTCTATAAGAACACGAGACTCGATTTTGCTAA AAAAAGAACAACTGGGAAAACATCAACCAATCTTAGAGACTTAACTGCCT CCATGCTACCCTCTGAACCTCTGATATTGCTGGTTGTAATCAGTGTCAAA AGAAAGCGTGAATGGCATAGTAGAATTGGCCGTTAAGAACAATCGAAGTT CACATTACAGAAATTAGATTAATTTTTCTTCGTTTTTTTTTTTACTTGAT AGTCAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTGAACGACT GTGACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAAAGCGTAT TCTTCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTGGTTTTAA AACTCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCACACTTATA GTGAATATC

Coding sequence (CDS) from alignment at sc0000011:120074..123332-

>TCONS_00001641 ID=TCONS_00001641|Name=TCONS_00001641|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0000011:120074..123332- (Clytia hemisphaerica)
TCAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTGAACGACTGT
GACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAAAGCGTATTC
TTCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTGGTTTTAAAA
CTCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCACACTTATAGT
GAATATGATGGCTCAAAGGAGCGACTACACCACATTTGGAGCTATGTGTT
TCAATGTTCATTACCGGAGCAGAGTGATGCGGTGCGCTATAACATGGCGG
GAATGTTGTGTTTATTGGCAGAACATGCATGCTTGGAACCAAGGAAGAAG
AAATCTTATCATGCCTCTCTCTGATAGCATTGATGTTGAAATATGACGAC
GTTCAAAAGCAGATATTCAAGAAATGCATGACCAAACCTATCGAAAGACA
AAGTCAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTGAACGAC
TGTGACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAAAGCGTA
TTCTTCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTGGTTTTA
AAACTCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCACACTTAT
AGTGAATATGATGGCTCAAAGGAGCGACTACACCACATTTGGAGCTATGT
GTTTCAATGTTCATTACCGGAGCAGAGTGATGCGGTGCGCTATAACATGG
CGGGAATGTTGTGTTTATTGGCAGAACATGCATGCTTGGAACCAAGGAAG
AAGAAATCTTATCATGCCTCTCTCTGATAGCATTGATGTTGAAATATGAC
GACGTTCAAAAGCAGATATTCAAGAAATGCATGACCAAACCTATCGAAAG
ACAAAGTCAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTGAAC
GACTGTGACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAAAGC
GTATTCTTCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTGGTT
TTAAAACTCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCACACT
TATAGTGAATATGATGGCTCAAAGGAGCGACTACACCACATTTGGAGCTA
TGTGTTTCAATGTTCATTACCGGAGCAGAGTGATGCGGTGCGCTATAACA
TGGCGGGAATGTTGTGTTTATTGGCAGAACATGCATGCTTGGAACCAAGG
AAGAAGAAATCTTATCATGCCTCTCTCTGATAGCATTGATGTTGAAATAT
GACGACGTTCAAAAGCAGATATTCAAGAAATGCATGACCAAACCTATCGA
AAGACAAAGTCAATCACTACCAATTGTATTATTGTGCGTTAAACTTGTTG
AACGACTGTGACGCAGATATACGCCGTCATGCGGCGCAGGAAATCCACAA
AGCGTATTCTTCAAACGGTAACCGTAAGTTTTTGCCATCGCTTTGTCCTG
GTTTTAAAACTCTTTTATACTTCTCGCTTCATTGCTTTAGGATCAACCAC
ACTTATAGTGAATATGATGGCTCAAAGGAGCGACTACACCACATTTGGAG
CTATGTGTTTCAATGTTCATTACCGGAGCAGAGTGATGCGGTGCGCTATA
ACATGGCGGGAATGTTGTGTTTATTGGCAGAACATGCATGCTTGGAACCA
AGGAAGAAGAAATCTTATCATGCCTCTCTCTGATAGCATTGATGTTGAAA
TATGACGACGTTCAAAAGCAGATATTCAAGAAATGCATGACCAAACCTAT
CGAAAGACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000855XLOC_000855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001641-exon-sc0000011-1575043694:123287..123332TCONS_00001641-exon-sc0000011-1575043694:123287..123332Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1575043694:121088..121154TCONS_00001641-exon-sc0000011-1575043694:121088..121154Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1575043694:120572..120707TCONS_00001641-exon-sc0000011-1575043694:120572..120707Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1575043694:120074..120280TCONS_00001641-exon-sc0000011-1575043694:120074..120280Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1510915933:123287..123332TCONS_00001641-exon-sc0000011-1510915933:123287..123332Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1510915933:121088..121154TCONS_00001641-exon-sc0000011-1510915933:121088..121154Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1510915933:120572..120707TCONS_00001641-exon-sc0000011-1510915933:120572..120707Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1510915933:120074..120280TCONS_00001641-exon-sc0000011-1510915933:120074..120280Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1491911889:123287..123332TCONS_00001641-exon-sc0000011-1491911889:123287..123332Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1491911889:121088..121154TCONS_00001641-exon-sc0000011-1491911889:121088..121154Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1491911889:120572..120707TCONS_00001641-exon-sc0000011-1491911889:120572..120707Clytia hemisphaericaexon
TCONS_00001641-exon-sc0000011-1491911889:120074..120280TCONS_00001641-exon-sc0000011-1491911889:120074..120280Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001641-proteinTCONS_00001641-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:120074..123332 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43635 1.54073 0.650522 0.477325 20.7258 16.9901 9.04858 12.2746 7.98851 11.2444 8.00366 7.65279 7.92873 7.0436 8.56385 11.1159 13.3704 10.2782 4.12254 4.31394 8.61019 7.72212 11.1988 10.4808 3.85535 5.23003 5.31769 3.36307 11.6379 9.90805
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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