TCONS_00001640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001640
Unique NameTCONS_00001640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length925

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001640 ID=TCONS_00001640|Name=TCONS_00001640|organism=Clytia hemisphaerica|type=transcript|length=925bp
GCGATAGCCTGATAGCCTAGATACCATCCACCTGTCCGCTCaattcaaaa
gagatttttagATTAAATTTTAGGTTATATTCGAACTCGGTTGGGCTGCT
CtacttttcaaaatggtaggcTATTTCAGCATTGTCAGGGTCCAAGGAAA
GGTGTGTCAGCACAATTAAAAGTCATCAAATTTAAGTTTTGCACAACATA
CAAACGCCTTGTCATCATCGTCAGCATTCAGGTATAGCACTATATATTGC
ATTTTTCATTTACTATTTTTCATCATTAAATTATATTCACAAATCAAAGT
GACTGACAAAAAAGCAAGTGGAGGTACCAGcagtaaaaaagaaataaaaa
aagcatcaaaagccagcaaaacaaaaaacaagatGGGTAAAGAACAAGCA
AGGAAATTTGTTGAAGAGGCTATTGCCAAAGACAAAGTTgttgtattttc
aaagacataTTGTCCATACTGTAAAATGGCAAAGGGAAGTCTTGATAAAG
TTGGAGCAAAATATGTTGTCATTGAATTAGACAATCGTAATGACGGTGGT
GCAATCCAGGATGCTTTAGCAGAAATCACAGGTGCTCGAACTgTTCCACG
GGTTTTCATCAGCGGAAAATGTATTGGTGGTGGATCAGAAACCCAGAATT
TGGAAAAATCAGGACAACTTGCTACAATGGTTGCATAAGTTTTTAATTTa
gcattattttttattttagaaaattatttataGTTAAATTTTAGTTAATT
AAGAGTCTTATCAGAATTGTTGTTTAGGCAATCGTCAACGGTCTATTGAA
TAGGTGATTACTACAGCATAAATCTATCTAATCTATCTATCTAATGATAG
ACTTTCAATTATATCAATTATTATTTATATAAACTACGAAGatcaatatt
attttgtttttttctaaattaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00001640-protein

>TCONS_00001640-protein ID=TCONS_00001640-protein|Name=TCONS_00001640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MGKEQARKFVEEAIAKDKVVVFSKTYCPYCKMAKGSLDKVGAKYVVIELD
NRNDGGAIQDALAEITGARTVPRVFISGKCIGGGSETQNLEKSGQLATMV
A
Run BLAST on NCBI

transcript from alignment at sc0000011:99953..101653-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001640 ID=TCONS_00001640|Name=TCONS_00001640|organism=Clytia hemisphaerica|type=transcript|length=1701bp|location=Sequence derived from alignment at sc0000011:99953..101653- (Clytia hemisphaerica)
GCGATAGCCTGATAGCCTAGATACCATCCACCTGTCCGCTCAATTCAAAA
GAGATTTTTAGATTAAATTTTAGGTTATATTCGAACTCGGTTGGGCTGCT
CTACTTTTCAAAATGGTAGGCTATTTCAGCATTGTCAGGGTCCAAGGAAA
GGTGTGTCAGCACAATTAAAAGTCATCAAATTTAAGTTTTGCACAACATA
CAAACGCCTTGTCATCATCGTCAGCATTCAGGTATAGCACTATATATTGC
ATTTTTCATTTACTATTTTTCATCATTAAATTATATTCACAAATCAAAGT
GACTGACAAAAAAGCAAGTGGAGGTACCAGCAGTAAAAAAGAAATAAAAA
AAGCATCAAAAGCCAGCAAAACAAAAAACAAGATGGGTAAAGAACAAGCA
AGGAAATTTGTTGAAGAGGCTATTGCCAAAGACAAAGTTGTTGTATTTTC
AAAGACATATTGTCCATACTGTAAAATGGCAAAGGGAAGTCTTGATAAAG
TTGGAGCAAAATATGTTGTCATTGAATTAGACAATCGTAATGACGGTGGT
GCAATCCAGGATGCTTTAGCAGAAATCACAGGTGCTCGAACTGTAAGTAG
ACTTCATTTATGTTTAGTTTAGTTTCTTGTTTGTTCTTGAACGAACAAGA
TTCTTATAAAAGAAAAAGAATTACAATTAATTGTTGTAACTGACTAGCTA
TATATAGGGGTTAAATTGAGTAGTGGTAAATTAGAACAGCAAAGCCAGTC
AGGCACATCCTGGCAAATGAACGGGGTATTTTTCACTTGCAATTGGTGGC
AAATGCAAGGGGTCGAAAACAAAAGTGATGTAATAGCTCTGAATACCCCA
CGCACGCAATTGAACCGGGTTGGAAATATTTTGCTTCATTTCAAAGAACT
GCATAGATGAAATTTTCTTCCATGGGTCAATTTTGTCTTCAAAGATTGAA
GAAACTTTTAACGAAAAAATAAAGTTTCCAGTTTTCTTCCTTTTTTCCCG
TTTTCTCAGTTTGAAGTTCATTTTTATTCATTTTCACGCTTTGAGCCTGA
GACGTCCTATCTCATTTACACTGGGTGACGAATACCCCATGCAAATACTC
ACCCCGTTCATTTGCAAGGATGCGCCTGACTGAAAGTGATCTGTTGTGCA
ATGTTTAAAAGTAAAGAAAATCTAATGGCTTATTTTTAAGATTGTTTTCA
TACCTCTCTAACTATGAAATAAAATTGGATTGAAAATTAACACAAAAAAA
TATTATGATCTGGTGTTCTGAGCCCAAACACCAAATGAAATTACCCCTTG
CTTTTTGCAACCCAATTGACAGTACAATAAAAAATATTTGTTTAGTATAA
TAGAAATTATTTTTCTAGGTTCCACGGGTTTTCATCAGCGGAAAATGTAT
TGGTGGTGGATCAGAAACCCAGAATTTGGAAAAATCAGGACAACTTGCTA
CAATGGTTGCATAAGTTTTTAATTTAGCATTATTTTTTATTTTAGAAAAT
TATTTATAGTTAAATTTTAGTTAATTAAGAGTCTTATCAGAATTGTTGTT
TAGGCAATCGTCAACGGTCTATTGAATAGGTGATTACTACAGCATAAATC
TATCTAATCTATCTATCTAATGATAGACTTTCAATTATATCAATTATTAT
TTATATAAACTACGAAGATCAATATTATTTTGTTTTTTTCTAAATTAAAA
A

Coding sequence (CDS) from alignment at sc0000011:99953..101653-

>TCONS_00001640 ID=TCONS_00001640|Name=TCONS_00001640|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0000011:99953..101653- (Clytia hemisphaerica)
GTTCCACGGGTTTTCATCAGCGGAAAATGTATTGGTGGTGGATCAGAAAC
CCAGAATTTGGAAAAATCAGGACAACTTGCTACAATGGTTGCATAAATGG
GTAAAGAACAAGCAAGGAAATTTGTTGAAGAGGCTATTGCCAAAGACAAA
GTTGTTGTATTTTCAAAGACATATTGTCCATACTGTAAAATGGCAAAGGG
AAGTCTTGATAAAGTTGGAGCAAAATATGTTGTCATTGAATTAGACAATC
GTAATGACGGTGGTGCAATCCAGGATGCTTTAGCAGAAATCACAGGTGCT
CGAACTGTTCCACGGGTTTTCATCAGCGGAAAATGTATTGGTGGTGGATC
AGAAACCCAGAATTTGGAAAAATCAGGACAACTTGCTACAATGGTTGCAT
AAATGGGTAAAGAACAAGCAAGGAAATTTGTTGAAGAGGCTATTGCCAAA
GACAAAGTTGTTGTATTTTCAAAGACATATTGTCCATACTGTAAAATGGC
AAAGGGAAGTCTTGATAAAGTTGGAGCAAAATATGTTGTCATTGAATTAG
ACAATCGTAATGACGGTGGTGCAATCCAGGATGCTTTAGCAGAAATCACA
GGTGCTCGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000854XLOC_000854Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001640-proteinTCONS_00001640-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001640-exon-sc0000011-1575043694:101062..101653TCONS_00001640-exon-sc0000011-1575043694:101062..101653Clytia hemisphaericaexon
TCONS_00001640-exon-sc0000011-1575043694:99953..100285TCONS_00001640-exon-sc0000011-1575043694:99953..100285Clytia hemisphaericaexon
TCONS_00001640-exon-sc0000011-1510915933:101062..101653TCONS_00001640-exon-sc0000011-1510915933:101062..101653Clytia hemisphaericaexon
TCONS_00001640-exon-sc0000011-1510915933:99953..100285TCONS_00001640-exon-sc0000011-1510915933:99953..100285Clytia hemisphaericaexon
TCONS_00001640-exon-sc0000011-1491911889:101062..101653TCONS_00001640-exon-sc0000011-1491911889:101062..101653Clytia hemisphaericaexon
TCONS_00001640-exon-sc0000011-1491911889:99953..100285TCONS_00001640-exon-sc0000011-1491911889:99953..100285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:99953..101653 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
290.542	300.641	49.7156	27.7354	82.7178	59.7012	94.347	99.1576	90.72	132.291	97.839	48.9252	46.8318	34.206	55.6286	72.706	100.283	103.328	30.9046	70.5214	73.8358	71.2748	124.818	123.298	62.014	99.8241	158.392	138.862	138.99	104.723
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014025Glutaredoxin_subgr
IPR011899Glutaredoxin_euk/vir
IPR002109Glutaredoxin
IPR011767GLR_AS
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron carrier activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00001640 vs. Swiss-Prot (Human)
Match: GLRX2 (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.071e-22
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 2 
Query:  410 VEEAIAKDKVVVFSKTYCPYCKMAKGSLDKVGAKYVVIELDNRNDGGAIQDALAEITGARTVPRVFISGKCIGGGSETQNLEKSGQLATMV 682
            ++E I+ + VV+FSKT C YC MAK     +   Y V+ELD    G   QDAL ++TG RTVPR+F++G  IGG ++T  L K G+L  +V
Sbjct:   60 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150
The following BLAST results are available for this feature:
BLAST of TCONS_00001640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLRX27.071e-2246.15Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
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