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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001623 ID=TCONS_00001623|Name=TCONS_00001623|organism=Clytia hemisphaerica|type=transcript|length=943bp
gttttttattgattctgtTGCCTTCCTTTCCTGGCTTTTCTTCTCTGATT
CGTAGGATAGCTTTAGTTTAGTTTCAATGtctattaatttttgtttggat
tttacatttttcattgggtttggaaattttctaaaaatgttttttctttt
tctgaataAAATCTTTCGCTCGCGTGGTatcttatgaaattttttaGTGT
TTGGTTTTCGTTTTGGTACATATTCCTTAATTATGTCTATGATCCAGTCT
GTGATTGTTGACAATTGGTCAGCTGTCGGTTGATCATGAAGGTCTGTCCA
CAAtttatccttcattttttccttGATTGATACCCAgtttattgtttttg
aatgGAAATTGTACGCATCAAATACTCCCTGTTGTCATGCTGATAGTGTT
GTTTCTTAAAATCATTTTGGTACTGATTTTCTTTGACATcccatttgttt
tgatattctctctctctctgtGGGTAGGTTTCGGTAtttctttttgttcc
ttttaCATGTGTTAGCTGACACATCTTATTGAAACATTCTCCTTTCCTCA
GTGAATCAAAGCacatttttgggtgaaaaaagaGACAGTTTCTACCTTTT
TGACAGCCAACTCTGGCTGTTCCGTGCTTCATGAATTTTCGACATGCTTT
TGGATGGTCGAACTTGCAGTTTCTTCCCTTTATTCCGTGCTTGCATTTTC
CTTTTACATAGTGCGCACAGGTTTTGGATATCTGTCGATTTTGGTCCGTC
AAATTGTCACTTATTTTCTCAATTGTCTCATTTGACTCTGAGTTGTCTTT
ATCACTCAGGATTGGATCACTCATATTGTCATCCTCATCTTGTTTGCCTG
CCATTGGTATTGGCTTGACAAGGTTATTAAGGTCTCTctgtcttttgttt
ttcttctttccagcTTCGCTCTTTGGGAGGTTCTCATTAGCAC Run BLAST on NCBI transcript from alignment at sc0000011:1004783..1006925+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001623 ID=TCONS_00001623|Name=TCONS_00001623|organism=Clytia hemisphaerica|type=transcript|length=2143bp|location=Sequence derived from alignment at sc0000011:1004783..1006925+ (Clytia hemisphaerica)
gttttttattgattctgtTGCCTTCCTTTCCTGGCTTTTCTTCTCTGATT
CGTAGGATAGCTTTAGTTTAGTTTCAATGtctattaatttttgtttggat
tttacatttttcattgggtttggaaattttctaaaaatgttttttctttt
tctgaataAAATCTTTCGCTCGCGTGGTatcttatgaaattttttaGTGT
TTGGTTTTCGTTTTGGTACATATTCCTTAATTATGTCTATGATCCAGTCT
GTGATTGTTGACAATTGGTCAGCTGTCGGTTGATCATGAAGGTCTGTCCA
CAAtttatccttcattttttccttGATTGATACCCAgtttattgtttttg
aatgGAAATTGTACGCATCAAATACATTACGCACAACAAAGGGATCCTCC
TTTTGGAAACTTGAGTGTAAATCAAAGTGAATTTTAACATTGATCATTGA
GTGATGGGATATGTAATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTt
tgaaaaatagctaaaaaatcCATTTCTTTGTTTGTATTCTGGTTATTCCT
TTGATGGGTTTCTTGAGATCCATACTCCCTGTTGTCATGCTGATAGTGTT
GTTTCTTAAAATCATTTTGGTACTGATTTTCTTTGACATcccatttgttt
tgatattctctctctctctgtGGGTAGGTTTCGGTAtttctttttgttcc
ttttaCATGTGTTAGCTGACACATCTTATTGAAACATTCTCCTTTCCTCA
GTGAATCAAAGCacatttttgggtgaaaaaagaGACAGTTTCTACCTTTT
TGACAGCCAACTCTGGCTGTTCCGTGCTTCATGAATTTTCGACATGCTTT
TGGATGGTCGAACTTGCAGTTTCTTCCCTTTATTCCGTGCTTGCATTTTC
CTTTTACATAGTGCGCACAGGTTTTGGATATCTGTCGATTTTGGTCCGTC
AAATTGTCACTTATTTTCTCAATTGTCTCATTTGACTCTGAGTTGTCTTT
ATCACTCAGGATTGGATCACTCATATTGTCATCCTCATCTTGTTTGCCTG
CCATTGGTATTGGCTTGACAAGGTTATTAAGGTCTCTctgtcttttgttt
ttcttctttccagcTTCGCTCTTTGGGAGGTTCTCATTAGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001623-exon-sc0000011-1491911889:1004783..1005157 | TCONS_00001623-exon-sc0000011-1491911889:1004783..1005157 | Clytia hemisphaerica | exon |
| TCONS_00001623-exon-sc0000011-1510915933:1004783..1005157 | TCONS_00001623-exon-sc0000011-1510915933:1004783..1005157 | Clytia hemisphaerica | exon |
| TCONS_00001623-exon-sc0000011-1575043694:1004783..1005157 | TCONS_00001623-exon-sc0000011-1575043694:1004783..1005157 | Clytia hemisphaerica | exon |
| TCONS_00001623-exon-sc0000011-1491911889:1006358..1006925 | TCONS_00001623-exon-sc0000011-1491911889:1006358..1006925 | Clytia hemisphaerica | exon |
| TCONS_00001623-exon-sc0000011-1510915933:1006358..1006925 | TCONS_00001623-exon-sc0000011-1510915933:1006358..1006925 | Clytia hemisphaerica | exon |
| TCONS_00001623-exon-sc0000011-1575043694:1006358..1006925 | TCONS_00001623-exon-sc0000011-1575043694:1006358..1006925 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:1004783..1006925 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000571 | Znf_CCCH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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