TCONS_00001623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001623
Unique NameTCONS_00001623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length943

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001623 ID=TCONS_00001623|Name=TCONS_00001623|organism=Clytia hemisphaerica|type=transcript|length=943bp
gttttttattgattctgtTGCCTTCCTTTCCTGGCTTTTCTTCTCTGATT
CGTAGGATAGCTTTAGTTTAGTTTCAATGtctattaatttttgtttggat
tttacatttttcattgggtttggaaattttctaaaaatgttttttctttt
tctgaataAAATCTTTCGCTCGCGTGGTatcttatgaaattttttaGTGT
TTGGTTTTCGTTTTGGTACATATTCCTTAATTATGTCTATGATCCAGTCT
GTGATTGTTGACAATTGGTCAGCTGTCGGTTGATCATGAAGGTCTGTCCA
CAAtttatccttcattttttccttGATTGATACCCAgtttattgtttttg
aatgGAAATTGTACGCATCAAATACTCCCTGTTGTCATGCTGATAGTGTT
GTTTCTTAAAATCATTTTGGTACTGATTTTCTTTGACATcccatttgttt
tgatattctctctctctctgtGGGTAGGTTTCGGTAtttctttttgttcc
ttttaCATGTGTTAGCTGACACATCTTATTGAAACATTCTCCTTTCCTCA
GTGAATCAAAGCacatttttgggtgaaaaaagaGACAGTTTCTACCTTTT
TGACAGCCAACTCTGGCTGTTCCGTGCTTCATGAATTTTCGACATGCTTT
TGGATGGTCGAACTTGCAGTTTCTTCCCTTTATTCCGTGCTTGCATTTTC
CTTTTACATAGTGCGCACAGGTTTTGGATATCTGTCGATTTTGGTCCGTC
AAATTGTCACTTATTTTCTCAATTGTCTCATTTGACTCTGAGTTGTCTTT
ATCACTCAGGATTGGATCACTCATATTGTCATCCTCATCTTGTTTGCCTG
CCATTGGTATTGGCTTGACAAGGTTATTAAGGTCTCTctgtcttttgttt
ttcttctttccagcTTCGCTCTTTGGGAGGTTCTCATTAGCAC
Run BLAST on NCBI

transcript from alignment at sc0000011:1004783..1006925+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001623 ID=TCONS_00001623|Name=TCONS_00001623|organism=Clytia hemisphaerica|type=transcript|length=2143bp|location=Sequence derived from alignment at sc0000011:1004783..1006925+ (Clytia hemisphaerica)
gttttttattgattctgtTGCCTTCCTTTCCTGGCTTTTCTTCTCTGATT CGTAGGATAGCTTTAGTTTAGTTTCAATGtctattaatttttgtttggat tttacatttttcattgggtttggaaattttctaaaaatgttttttctttt tctgaataAAATCTTTCGCTCGCGTGGTatcttatgaaattttttaGTGT TTGGTTTTCGTTTTGGTACATATTCCTTAATTATGTCTATGATCCAGTCT GTGATTGTTGACAATTGGTCAGCTGTCGGTTGATCATGAAGGTCTGTCCA CAAtttatccttcattttttccttGATTGATACCCAgtttattgtttttg aatgGAAATTGTACGCATCAAATACATTACGCACAACAAAGGGATCCTCC TTTTGGAAACTTGAGTGTAAATCAAAGTGAATTTTAACATTGATCATTGA GTGATGGGATATGTAATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTt tgaaaaatagctaaaaaatcCATTTCTTTGTTTGTATTCTGGTTATTCCT TTGATGGGTTTCTTGAGATCCATACTCCCTGTTGTCATGCTGATAGTGTT GTTTCTTAAAATCATTTTGGTACTGATTTTCTTTGACATcccatttgttt tgatattctctctctctctgtGGGTAGGTTTCGGTAtttctttttgttcc ttttaCATGTGTTAGCTGACACATCTTATTGAAACATTCTCCTTTCCTCA GTGAATCAAAGCacatttttgggtgaaaaaagaGACAGTTTCTACCTTTT TGACAGCCAACTCTGGCTGTTCCGTGCTTCATGAATTTTCGACATGCTTT TGGATGGTCGAACTTGCAGTTTCTTCCCTTTATTCCGTGCTTGCATTTTC CTTTTACATAGTGCGCACAGGTTTTGGATATCTGTCGATTTTGGTCCGTC AAATTGTCACTTATTTTCTCAATTGTCTCATTTGACTCTGAGTTGTCTTT ATCACTCAGGATTGGATCACTCATATTGTCATCCTCATCTTGTTTGCCTG CCATTGGTATTGGCTTGACAAGGTTATTAAGGTCTCTctgtcttttgttt ttcttctttccagcTTCGCTCTTTGGGAGGTTCTCATTAGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000844XLOC_000844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001623-exon-sc0000011-1491911889:1004783..1005157TCONS_00001623-exon-sc0000011-1491911889:1004783..1005157Clytia hemisphaericaexon
TCONS_00001623-exon-sc0000011-1510915933:1004783..1005157TCONS_00001623-exon-sc0000011-1510915933:1004783..1005157Clytia hemisphaericaexon
TCONS_00001623-exon-sc0000011-1575043694:1004783..1005157TCONS_00001623-exon-sc0000011-1575043694:1004783..1005157Clytia hemisphaericaexon
TCONS_00001623-exon-sc0000011-1491911889:1006358..1006925TCONS_00001623-exon-sc0000011-1491911889:1006358..1006925Clytia hemisphaericaexon
TCONS_00001623-exon-sc0000011-1510915933:1006358..1006925TCONS_00001623-exon-sc0000011-1510915933:1006358..1006925Clytia hemisphaericaexon
TCONS_00001623-exon-sc0000011-1575043694:1006358..1006925TCONS_00001623-exon-sc0000011-1575043694:1006358..1006925Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:1004783..1006925 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.83729 5.07793 6.09171 5.22855 10.5905 7.28155 8.03998 8.69479 4.64027 3.54665 2.38453 4.84845 3.94772 2.97525 1.65597 2.03842 1.84167 2.12084 2.4979 1.90895 3.14467 3.0612 0.820071 1.76822 5.91802 6.24894 1.78578 2.11268 2.89556 1.95526
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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