TCONS_00001592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001592
Unique NameTCONS_00001592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001592 ID=TCONS_00001592|Name=TCONS_00001592|organism=Clytia hemisphaerica|type=transcript|length=1640bp
GTGAGTTAGGCGGGGTTAAGCTGTTTGGATCTACTAacaacgtgatcgtg
ataATTGTAAACAGTGTTTTCGGGTTTTCAAATGCCACGTTCATCAGAGA
CGCTGCACACAAGCTAGCAACAAAGATGGCGACGATTCTGAGTCTTGTAA
CTTTCTGTTTGTCACTGGTATTCCATGCAAATGGTTTGTCATTTACATTA
TCAGCAGGCAATAAGAAGTGCCTAAGGGAAGAAGTTCACAAAGATATCCT
TGTAACTGGCGAATACAAACTTTCAGACGCCCCTATTCAAACACATTTGA
CGGTGATTGACACAAATGGACATGTTTTGTACAAAAAGGAAGAAGCTTCC
AGAGGAAAGTTCGCTTTCACTACTGATGATTATGATATGTTTGAAGTATG
TTTCCAAAGTGAAGGAACTCACGGACAAGGAATTGATCGTGAAATTTCAT
TAGAAGTCAAAACTGGTGTAGAAGCTAAAAATTATGATGACCTTCAAAAG
ACTGAGAAATTGAAACCAATGGAATTAGAATTGAAGAAACTGGAAGATTT
ATCCGAAGCTATTGTCAACGATTTCGCTTACATGAGAGCGAGAGAAGAAC
AGATGAGAGATACTAACGAATCAACCAGCGACCGTGTCTTATACTTCAGC
GTTTTCTCCATGTTATGTTTAGTTGGGTTGGCCATGTGGCAAATCTTTTA
TCTTCGAAGATTTTTCATTGCCAAGAAGCTTATCGAAaactaaaatggaa
aaaaacgaaaacattcaaaaaagcATTCACCTACAATATCTGCTCTGTGG
AAAATATCTAATTTACATCTATTTTACTGAAATGTTTTGCGATTTAGTAT
TAAAATTAGATACCTCAACAAAAATGTAATCTATTTGACATTGTCCATCC
GTTCTCGGATTTGTCCATCCGTTCTCGGATTAAATATCTGTTTTTAAGTC
AAATCTcttaaaaaattgatgtttagaAAGAGATTTCGTTACTCCCTCTA
AATTTGTTgccttttgtttgaaaataagTGATACATTTTAAAAAGACTTT
TCTAAACTCTTAAAAATCTTCACAATGCTTAACCCTTGTTCTATAGGCTC
TTTTCTAAACATCCATTAGCTTTTTCCATTTCCTTGTTTAGAAAACAGTA
TTATATTCTATGTATTCCTTGAATAATTTtgtgttgatatttttattttg
tgtgaTATTCCAAACCAACCAAATAGGTTTTGTATATTTCAAACTAAAGa
ggaattttgcaatttttttttgggtgCTGTGTGGTGTAGTGGCATTGAGT
AGACTAGTTTTCAAATGTCAATATAGCTTGACTTCTTACATccacttctt
tctttctttctataCTGAATACATCATAACTCTTTTTAGTTTCTGAATAT
TCCCCTCGCAATTTGAACACTGTACTTTATAGTTAACAgaacaatattca
atttccaatTTTGAGTATAAATTTTTCGATTCTATGGTACAgctattttg
gtaattttttctCGACGACTTTAgaattttaacaattatttAATTTCATA
GGCTGGAAAGTAAACattgaaatttttagattttttactttctccacgca
atttttaatgaaaatacaaaCTTAAAATCCTATACGGCTA
Run BLAST on NCBI

protein sequence of TCONS_00001592-protein

>TCONS_00001592-protein ID=TCONS_00001592-protein|Name=TCONS_00001592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
ELGGVKLFGSTNNVIVIIVNSVFGFSNATFIRDAAHKLATKMATILSLVT
FCLSLVFHANGLSFTLSAGNKKCLREEVHKDILVTGEYKLSDAPIQTHLT
VIDTNGHVLYKKEEASRGKFAFTTDDYDMFEVCFQSEGTHGQGIDREISL
EVKTGVEAKNYDDLQKTEKLKPMELELKKLEDLSEAIVNDFAYMRAREEQ
MRDTNESTSDRVLYFSVFSMLCLVGLAMWQIFYLRRFFIAKKLIEN
Run BLAST on NCBI

transcript from alignment at sc0000011:646851..659145+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001592 ID=TCONS_00001592|Name=TCONS_00001592|organism=Clytia hemisphaerica|type=transcript|length=12295bp|location=Sequence derived from alignment at sc0000011:646851..659145+ (Clytia hemisphaerica)
GTGAGTTAGGCGGGGTTAAGCTGTTTGGATCTACTAacaacgtgatcgtg
atagtaagaaaatttaacttttaactTAATTTAACGTGATTTGGAATTTC
TTTTGCGTGATCCTTTATCTTCTTCTTTTGCTTCAAATCATCAGGGTGGT
GCCAGGACCCACTTTGACGTCGCGTTATCTCGTGATTTTGGGTCcctcaa
attcaaaattttaagttcaatCTTTGAAATGATAATCATTTTGTTTGCAA
AGCCGAATCGAACATTTTACTCCGATgtcttctttgaaattttggccgCT
ATTTGTTGCTTTTAGGATTACGCATACATTTTATAGATTGTAAACAGTGT
TTTCGGGTTTTCAAATGCCACGTTCATCAGAGACGCTGCACACAAGCTAG
CAACAAAGATGGCGACGATTCTGAGTCTTGTAACTTTCTGTTTGTCACTG
GTATTCCATGCAAATGGTTTGTCATTTACATTATCAGCAGGCAATAAGAA
GTGCCTAAGGGAAGAAGTTCACAAAGATATCCTTGTAACTGGCGAATACA
AACTTTCAGACGCCCCTATTCAAACACATTTGACGGTATGTTTTTTATAC
TCTCCACTTCTTTCACTgacaattcaattcaattcaatttcaattcaaaa
catatatttacccgAAGGAAGGGACACCAAGTTTAGAAACCTAATTACAA
ATGGTGCAACCTGTACCGTCAGACCGTAAGGAtagcttgcatcagtggag
gctaacatggatagccctcaaatgaatgacctggttggtctttaaaatat
aaacttaaattaaaacaaaaatggtagagtagagctgcaagcggagctgc
atagttccAGCAATCTCAATCatcgaacggaatcaacgatcgaaccagtc
gaaccaaatcaaacgcaatcgaccgattgaaattcgattgtcgaacgcaa
tcaaatctcaatcgaacgtcaaaattctgggaaatattcgatttggttcg
attgttgttcgactggttagatcgtcgattccgttcgattcagattgtct
ggctttatttttgcagcttcccaacatccaaactctcaaacatcacaagc
cgaatgaaattaatttcgatttcccgtagaaattatgcgatgaacaatcc
gggggtcaatgaatcgacgatcgaacgcaatcgaacatcaatcaaacaca
atcgaatatcaattgaatctgaaaattgcggtaatattcgattgagattc
gattgcgttcgacaatcaaatttcaatagaccttttttcaaagagaccag
cctgttgaataattatgtagtccagcagaaaaacaacgatacagtcatgc
ataattactgtatcatgcatattgtaataatttatGCATGGTTGTATCAT
TTTTCTTCTGCTGGACtgcataattattcaacagggtggcctctttgaaa
aaaggtctatcgattGATTGCactcgatttggtttgactggttggctggt
catattgggcgttttggagttaccaccctcgaagcagtGGGCGCCTTTGC
CATTccgcaactctgtccaccattttaaatgagttaacaatagatctGAA
AGGGCGCTCTCATCAAGAGAGAtcatttgctttggtctccggctttggga
agtagtaatgttttcgattgttttcgatggaaaatggtaagaaacttaag
tttacaagtgtcattcagtttttgctggctgatagaatggcaggatcctg
gatggtttccttAACtgtcgattgagatcgtctggatagttcatttgatt
tgttttgaaatttttctgcttttggTTGGTCAGGCTaggcatttgatggc
tatgaAAGTTTCTGTCCACTAATGCAAGTTACACGACTTCAGGGTATCAT
CTCTTTTTATTGTATCAAAATATACTGTAATTGACCTTAAAATCACAGCT
ATAGCCATCATCCACAATAGACAGTCAGGAGTTTTTGCCTAAGGACCACC
CTGTCGATTCCCCGGACGATATAtggggcaaatgtctggggaacgaaaaa
agaatatttctATCCCAGGACAAACAAACCGCGTGGCTGGAGAAAAGTGA
ACGCGTGGTCACGAGTTAACACGCGGACGACACACGGCGGTCAACTAAGT
TCATGTGAATGCATCAAAATTGACGCCCATGTAATCGCCTGATCATATAA
GTACATTGCGCAGACCGCGCGTTCAGTCCAGGGTAAGtttaaataaacca
gccgaggctggaaggtcagccaatagagcttagctagatagctttaataa
gtgggttaacagatgtaagagatgtactgaaacaNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNaatactttggtacaacactgacttttatcacatctgac
tatcgcttgagccgccatcttgaaacaccacattatgatctgttaAAACA
ACGTACGCTAAAAGtaaccaaaaagttaacccgatcggaagaaagttaag
aaatcaaagtgagatcggaaaatcggattttttttttgccgtcttatgga
agaagaagaagaaatgaattttacggatttgaatgctcagcttaggctga
ccaaaaagTAGTGTTAAAATCCCCGGACACGCAACAAGAAAATCCCCGTC
ATGCGCAAGATGATTGGAAGGTCAAAAATCAGcagagtaaaaaaaaatct
cctAACTAAGGTAAAAGATATCTTTTAACTAGAGAATTATCcctggcagt
tagtcacactagcgtcctgccaaaatgtgtatcaaagattaatgctgtga
TAGCGCtttatcgtttacttgactctcaagcaaaaaaatgtggcgcaaaa
cttctaaagggattcatgaaaaaataacccggcgctttttaatgaaatta
acattttcaaaaactttgagaaattccctaaaatttgagccatagatgaa
aaaatttgagccaagccaaccttgaaaactaatttgaagatcaacttccc
aactTCCCATGCAGTCTAGCAGAATGttgtcccatgtttcgaccaatcgt
ctcaagttagagcagttgactgtaacaagatgactataatgtcaagatgt
caattaatgtacgatcaaaaaagtgtgagttgtaaaaataattacctcta
ttattctgaatctgttgctcgtgtttaaaaaattaacaaatttgtaataa
aaaattatgttttgtataaggagcaattattgttatttggttcaattggt
tgagtgtgtcaaatctttcagtttagttgacactttggtatcttcatttc
GTCACAGCGAAAGAGATtgttccctgcaatgcaggttcagTCTGATTGGC
CAGATTTTGTGCCTATTACTTAGCAATACTTTTGCatgcattttgataat
ttcgatctgcacgcataatttatggaaaaagctgactctgcagaaaaaag
gaaaacaaatgaaaaatgaaaacatgcacacttttttttataagaatatc
ttctataagaatatcagggtgaaaattggccaaatcgtaagatcGTAAGA
AACTCTAGGGcgagtttcacagaatttgataataatacagtcattttgta
tttggttaacagaaaaaaactaCTTCCTTTGTCAGAGAGGAATTGAAGCT
TTGAGAAAGaaaggggggggtcggtactaaaatccaagacatatatgagt
actaaaaggttttttgacaatttttgacatacccccacctaatttttgaa
aaatgaattttagtactaaaaattttttttacagtttAGCATAGTGACCA
CCTAAATTAGGAATTCGTTTCAGAGAATGGGTCTTTAGACTTTCAATAAA
ATGCCAACTCTGGTTATTTAAGCTGGCAATGAACCTGATCTATCTCTCTA
TTCTAGATATATAAAGACTCAAAAACAGTCAAGACACTTTTGCTCTGCTC
TACTTTAGTTATTGCAaagattgattggttatttttcaccTCTAATTTAC
AGCTTGCTATTTCTTTTCTGTTCAGTTATCCATGgttctttacaaaaaca
aagcattcaactttgaaaacattttttgaaaacaaaatttcttgaagacc
ccacctaatttaggattttagtacacatggtactaaaatgctttaatgct
ttttttgtaataccaccacgtcactaaaagtcatgatgtctaaaatttta
gtactgaccccccccctggaaaGAAACGTAGTTTTAATCCAAATGTttac
tcaaaagtccaaaactctcaaattgatcatttctcatgtttgtaaaaaag
tcaagtctaaaaaagtaagaatacgttaagaatatttcaccctcaatttt
ggcactttcttaagaatacttgaccctcatccaaagtacactattctgaa
aatccacttttttattgcgtgaatgcgtgaatctcggctattttgtgcgt
gaatacgtgaatttctcttttttcccaCCAATtttgtgcagttttcccga
ttttccaatgtttccctgatttttcccgaacattttctgattttctgaaa
aatcgggttattgcgtgaaactcagggaaaatttgcgtgaatgcgtgaat
ttcattctgtgtcagactaatccaCCTGCACCAAGGCGaacacgaaaaaa
aaatttgtttccggtccaccgggtgacaaaaaaaacactcacccAGCCGG
ccgcaaaataattttttttgcttaatttcgatcccaaaactcgatttttt
aaagcactcgtaGAAGTAAAAATTATGGTCTTCTTTACCTTAAATCTGTA
GTAACTTGACAACCCtacaggcttcggcataagaaaaattcacgtgtgat
catcgcacgcctagattttgatttatagtggtctaggcgtgcgtttattc
aaatacttaattttcatcttttatattttcaattgtgttacaatatctct
aggaactggacactctctttcattttgaatatttatcttcaattgCTAAA
GGCTCCAAACTGAAATTAAGAAgggaacttttttgagaaaaaagtagacT
GAGAGAAATATttccacaattttttttttaaatcctcactttatgaatgt
ttctttttattttactcacaagtcagcatgattccttttataaaaacaaa
gctgtttacttactgaaaagtccccactttgctgaatgtttctatttatt
ttactcacaagtcagcatgattccttttataaaaacaaagctgtttactt
actgaaaagtccccactttgctgaatgtttctatttattttactcacaaa
tcagcatgattcttttataaaaaccaagttgtatattaaaaaaaatattc
ttaaaagttgagttgcaagcaagaattaacaaaaacaatgcagggtttag
tttgagatgaataaaatttcatttctataacaATGATCAGGATAAAACCT
TCATTCCAAGTGATTTCTAGGCATGCATTTTACAGTGGAATATGAAATAT
CACGTGACaaatcacacgcctcaaacTGCTCAAACACTGattcacaaaag
tttttcaagcaaacaaactaaccctaaccctaacaatgCTGTAcaaaaaa
aatgcggccgggtgacgacgaaataaattttcatcctgccggtggaccgg
aaacaaaaatttttttgggttcgcccaagctctataattttagaactttg
tgaggtgaggtatttttttgtttttttctaaaattatgaactTGTATTCC
CAGGCTAGAAGCAAACTAACtgttttaaatgatcaattaggtcaATAAGA
TTGCAAAAACGAGTggagagaaaaattttgaccattttgctggtccccat
gtgaCATCATCACTTTTTGTgaggcttgaaaatgaaagtgaaaataagAA
GTTCAAATATGGCTCAAATAAAAGATATTCATCCCaaggtttcaaaaaat
atcacaacatatatctgaaaatcaatatttcagaAGCTATAAAAGAAAAT
AGctcaaaaaatgacgtcatcggcaattcaaaaatcatcaaaatcgaaaa
ttttttgtttcatttgataGAGGATGAGCTAGGGAACAAAGAGTATTACT
ACAAAAAAATCGCCTAAAAAATAGGCCCCTGTCAGCCAAattgtaattca
ttaaatttgccTGCAAAATGTTAGGTTAGGGCACACCCAGAAATCTTTAa
aagcttgagagtcaagtcaaACGCATTTCACAAAATAACGTTTTTCTTAG
CAATATTTATTGCCCTCtatcaaatgaaacaaaaaaaaaattaattgccG
ATggatgacgtcaattttttagcaatttataAATTTGATCCATGCTAGCC
TCAAAAATTAATCAGAGAAAAATCTACAGGTCAAAAGACACCCACCTAGA
TCCATTCACAGCCAGACAGGCTTTTTCCTGatatttcaccatttttgagC
AGCAATTATTTTAATTCAGCATGTAATTGAGGCCTTATAAATGGAAGGGC
TAGCTTGgtaattgaataacaaattttaGGTGGTTGAACTTTAGCAATCA
GTCCTTTAATTTTGTTTCTAGCTTTCAATTTTCATGACATTGTCTTAGGA
TTTGGAACTTGATTCAGTTAACtatcatccttgttgttgcaaacaCATCT
ATAGATGACTGatgtatttttttctaaaactaaCCTTTAACAACTCTGCA
TTGATAGAATCattattattaatattattgGGATAAGTTAAGATTTCTCC
TTGGTTCCCTCCACTTGAAAATTGTCACAAGCAATCAATTGACTGCATTC
TCTAATTCATTGTCTCTTTGCTGCTTATATAACTTAAACGACTCCCTGCA
GCAAAGAGACAATATTTGAagtttggtttttttattcaggcaccattttt
caatttctactATTCACTATAACATTTTCAGGTGATTGACACAAATGGAC
ATGTTTTGTACAAAAAGGAAGAAGCTTCCAGAGGAAAGTTCGCTTTCACT
ACTGATGATTATGATATGTTTGAAGTATGTTTCCAAAGTGAAGGTAAGCA
ACCCCGACCAACTATTACTCATTTTCTAGCTGTTATTTGCAAAGTCTTAT
TGGATATTACATATACGAGAAattaattctcaacttcagttgagctagat
aaaatctgagaatgtctgtctgtctgtctgtctgtctgtctgtctgtctg
tctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtcagtcacct
caaaactttggggcaggctggagactttaaaaatggtccgatttggctga
aattttgcacacttgatccttgggtgaatccctagttgtttttttcattt
ttaagggcgtggtcacgagttttagtCTCAAAACGTGGCTAAAACTTTAG
AGCAGGCTGGAGACCTCAAAAacggtcggatttggctgaagtTTGACACC
CTTGTTccttgggaaaatattttgggatgattttttatttttcgaaaatt
atcatttttgaggcctggggacgagtttttagcctaaacgaggctaaaac
ctatttaagaaatgctaaaattttccttaagccattaagtttacaattgg
gcctacgaattatttcaaagatactgaagttNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTTTTAtaatcaaaaagaagaaagattatAAAGATCATA
TTTGACAACGCTTCAAGCAACATAATAGTTATTTTCTTATTGACTTTACA
GGAACTCACGGACAAGGAATTGATCGTGAAATTTCATTAGAAGTCAAAAC
TGGTGTAGAAGCTAAAAATTATGATGACGTAAGTATGATGAAACCTTTTT
GGTTTGCAGGGTTAAAACAGGCCCACCAAAACCtagaaaaaatgtgtttt
tttttttcaaaaaagttaccAGAGATCTTTTTACGGACATACTGTATGAG
ATACAAGCCAGGGAGTTTCTGTAGAGCCAGAGCCAGGAAACTATGTTTCT
TAGATTCATATTTCATATTTGGCGCACCGAATAAAAGACtttcttttgta
aaagattGACTGACTTCAATTATTCGACCAAAGATTTTAAGATGTAATTT
TACTTCACTTTACAGCTTCAAAAGACTGAGAAATTGAAACCAATGGAATT
AGAATTGAAGAAACTGGAAGATTTATCCGAAGCTATTGTCAACGATTTCG
CTTACATGAGAGCGAGAGAAGAACAGATGAGAGATACTAACGGTAAGATC
GACTTTTTCTTTTACCTTATCGGCCcattttacaccggcccttattggcg
ttatctttgggctcgtggcgtaataagggccggtgttaaaAGGTCCGGCG
TAAAAAGAGCCGATAAGGTAGTTGTAAACTATAtgtaaattttctttgtt
cAGCCAAGGATCTTAAGTAGGATTCGGAGATTAATTAATAGCATTTTGTT
TCATAATTTGGAAAAGTTTGTGAAATTTTTGCTTCAGCGTACAAGCAAGG
TGAGTTAGCAAATTCAGGTAAATTCGATAAAAAGTAAGAAAACAGCCAAG
TCTCAAGAAAATTACTGTTTTTCGCAAATCGAATCATTACATTAAtcctt
tttatcttttttttaattcacaGAATCAACCAGCGACCGTGTCTTATACT
TCAGCGTTTTCTCCATGTTATGTTTAGTTGGGTTGGCCATGTGGCAAATC
TTTTATCTTCGAAGATTTTTCATTGCCAAGAAGCTTATCGAAaactaaaa
tggaaaaaaacgaaaacattcaaaaaagcATTCACCTACAATATCTGCTC
TGTGGAAAATATCTAATTTACATCTATTTTACTGAAATGTTTTGCGATTT
AGTATTAAAATTAGATACCTCAACAAAAATGTAATCTATTTGACATTGTC
CATCCGTTCTCGGATTTGTCCATCCGTTCTCGGATTAAATATCTGTTTTT
AAGTCAAATCTcttaaaaaattgatgtttagaAAGAGATTTCGTTACTCC
CTCTAAATTTGTTgccttttgtttgaaaataagTGATACATTTTAAAAAG
ACTTTTCTAAACTCTTAAAAATCTTCACAATGCTTAACCCTTGTTCTATA
GGCTCTTTTCTAAACATCCATTAGCTTTTTCCATTTCCTTGTTTAGAAAA
CAGTATTATATTCTATGTATTCCTTGAATAATTTtgtgttgatattttta
ttttgtgtgaTATTCCAAACCAACCAAATAGGTTTTGTATATTTCAAACT
AAAGaggaattttgcaatttttttttgggtgCTGTGTGGTGTAGTGGCAT
TGAGTAGACTAGTTTTCAAATGTCAATATAGCTTGACTTCTTACATccac
ttctttctttctttctataCTGAATACATCATAACTCTTTTTAGTTTCTG
AATATTCCCCTCGCAATTTGAACACTGTACTTTATAGTTAACAgaacaat
attcaatttccaatTTTGAGTATAAATTTTTCGATTCTATGGTACAgcta
ttttggtaattttttctCGACGACTTTAgaattttaacaattatttAATT
TCATAGGCTGGAAAGTAAACattgaaatttttagattttttactttctcc
acgcaatttttaatgaaaatacaaaCTTAAAATCCTATACGGCTA

Coding sequence (CDS) from alignment at sc0000011:646851..659145+

>TCONS_00001592 ID=TCONS_00001592|Name=TCONS_00001592|organism=Clytia hemisphaerica|type=CDS|length=4446bp|location=Sequence derived from alignment at sc0000011:646851..659145+ (Clytia hemisphaerica)
GAGTTAGGCGGGGTTAAGCTGTTTGGATCTACTAacaacgtgatcgtgat
aATTGTAAACAGTGTTTTCGGGTTTTCAAATGCCACGTTCATCAGAGACG
CTGCACACAAGCTAGCAACAAAGATGGCGACGATTCTGAGTCTTGTAACT
TTCTGTTTGTCACTGGTATTCCATGCAAATGGTTTGTCATTTACATTATC
AGCAGGCAATAAGAAGTGCCTAAGGGAAGAAGTTCACAAAGATATCCTTG
TAACTGGCGAATACAAACTTTCAGACGCCCCTATTCAAACACATTTGACG
GTGATTGACACAAATGGACATGTTTTGTACAAAAAGGAAGAAGCTTCCAG
AGGAAAGTTCGCTTTCACTACTGATGATTATGATATGTTTGAAGTATGTT
TCCAAAGTGAAGGAACTCACGGACAAGGAATTGATCGTGAAATTTCATTA
GAAGTCAAAACTGGTGTAGAAGCTAAAAATTATGATGACCTTCAAAAGAC
TGAGAAATTGAAACCAATGGAATTAGAATTGAAGAAACTGGAAGATTTAT
CCGAAGCTATTGTCAACGATTTCGCTTACATGAGAGCGAGAGAAGAACAG
ATGAGAGATACTAACGAATCAACCAGCGACCGTGTCTTATACTTCAGCGT
TTTCTCCATGTTATGTTTAGTTGGGTTGGCCATGTGGCAAATCTTTTATC
TTCGAAGATTTTTCATTGCCAAGAAGCTTATCGAAaactaaGAGTTAGGC
GGGGTTAAGCTGTTTGGATCTACTAacaacgtgatcgtgataATTGTAAA
CAGTGTTTTCGGGTTTTCAAATGCCACGTTCATCAGAGACGCTGCACACA
AGCTAGCAACAAAGATGGCGACGATTCTGAGTCTTGTAACTTTCTGTTTG
TCACTGGTATTCCATGCAAATGGTTTGTCATTTACATTATCAGCAGGCAA
TAAGAAGTGCCTAAGGGAAGAAGTTCACAAAGATATCCTTGTAACTGGCG
AATACAAACTTTCAGACGCCCCTATTCAAACACATTTGACGGTGATTGAC
ACAAATGGACATGTTTTGTACAAAAAGGAAGAAGCTTCCAGAGGAAAGTT
CGCTTTCACTACTGATGATTATGATATGTTTGAAGTATGTTTCCAAAGTG
AAGGAACTCACGGACAAGGAATTGATCGTGAAATTTCATTAGAAGTCAAA
ACTGGTGTAGAAGCTAAAAATTATGATGACCTTCAAAAGACTGAGAAATT
GAAACCAATGGAATTAGAATTGAAGAAACTGGAAGATTTATCCGAAGCTA
TTGTCAACGATTTCGCTTACATGAGAGCGAGAGAAGAACAGATGAGAGAT
ACTAACGAATCAACCAGCGACCGTGTCTTATACTTCAGCGTTTTCTCCAT
GTTATGTTTAGTTGGGTTGGCCATGTGGCAAATCTTTTATCTTCGAAGAT
TTTTCATTGCCAAGAAGCTTATCGAAaactaaGAGTTAGGCGGGGTTAAG
CTGTTTGGATCTACTAacaacgtgatcgtgataATTGTAAACAGTGTTTT
CGGGTTTTCAAATGCCACGTTCATCAGAGACGCTGCACACAAGCTAGCAA
CAAAGATGGCGACGATTCTGAGTCTTGTAACTTTCTGTTTGTCACTGGTA
TTCCATGCAAATGGTTTGTCATTTACATTATCAGCAGGCAATAAGAAGTG
CCTAAGGGAAGAAGTTCACAAAGATATCCTTGTAACTGGCGAATACAAAC
TTTCAGACGCCCCTATTCAAACACATTTGACGGTGATTGACACAAATGGA
CATGTTTTGTACAAAAAGGAAGAAGCTTCCAGAGGAAAGTTCGCTTTCAC
TACTGATGATTATGATATGTTTGAAGTATGTTTCCAAAGTGAAGGAACTC
ACGGACAAGGAATTGATCGTGAAATTTCATTAGAAGTCAAAACTGGTGTA
GAAGCTAAAAATTATGATGACCTTCAAAAGACTGAGAAATTGAAACCAAT
GGAATTAGAATTGAAGAAACTGGAAGATTTATCCGAAGCTATTGTCAACG
ATTTCGCTTACATGAGAGCGAGAGAAGAACAGATGAGAGATACTAACGAA
TCAACCAGCGACCGTGTCTTATACTTCAGCGTTTTCTCCATGTTATGTTT
AGTTGGGTTGGCCATGTGGCAAATCTTTTATCTTCGAAGATTTTTCATTG
CCAAGAAGCTTATCGAAaactaaGAGTTAGGCGGGGTTAAGCTGTTTGGA
TCTACTAacaacgtgatcgtgataATTGTAAACAGTGTTTTCGGGTTTTC
AAATGCCACGTTCATCAGAGACGCTGCACACAAGCTAGCAACAAAGATGG
CGACGATTCTGAGTCTTGTAACTTTCTGTTTGTCACTGGTATTCCATGCA
AATGGTTTGTCATTTACATTATCAGCAGGCAATAAGAAGTGCCTAAGGGA
AGAAGTTCACAAAGATATCCTTGTAACTGGCGAATACAAACTTTCAGACG
CCCCTATTCAAACACATTTGACGGTGATTGACACAAATGGACATGTTTTG
TACAAAAAGGAAGAAGCTTCCAGAGGAAAGTTCGCTTTCACTACTGATGA
TTATGATATGTTTGAAGTATGTTTCCAAAGTGAAGGAACTCACGGACAAG
GAATTGATCGTGAAATTTCATTAGAAGTCAAAACTGGTGTAGAAGCTAAA
AATTATGATGACCTTCAAAAGACTGAGAAATTGAAACCAATGGAATTAGA
ATTGAAGAAACTGGAAGATTTATCCGAAGCTATTGTCAACGATTTCGCTT
ACATGAGAGCGAGAGAAGAACAGATGAGAGATACTAACGAATCAACCAGC
GACCGTGTCTTATACTTCAGCGTTTTCTCCATGTTATGTTTAGTTGGGTT
GGCCATGTGGCAAATCTTTTATCTTCGAAGATTTTTCATTGCCAAGAAGC
TTATCGAAaactaaGAGTTAGGCGGGGTTAAGCTGTTTGGATCTACTAac
aacgtgatcgtgataATTGTAAACAGTGTTTTCGGGTTTTCAAATGCCAC
GTTCATCAGAGACGCTGCACACAAGCTAGCAACAAAGATGGCGACGATTC
TGAGTCTTGTAACTTTCTGTTTGTCACTGGTATTCCATGCAAATGGTTTG
TCATTTACATTATCAGCAGGCAATAAGAAGTGCCTAAGGGAAGAAGTTCA
CAAAGATATCCTTGTAACTGGCGAATACAAACTTTCAGACGCCCCTATTC
AAACACATTTGACGGTGATTGACACAAATGGACATGTTTTGTACAAAAAG
GAAGAAGCTTCCAGAGGAAAGTTCGCTTTCACTACTGATGATTATGATAT
GTTTGAAGTATGTTTCCAAAGTGAAGGAACTCACGGACAAGGAATTGATC
GTGAAATTTCATTAGAAGTCAAAACTGGTGTAGAAGCTAAAAATTATGAT
GACCTTCAAAAGACTGAGAAATTGAAACCAATGGAATTAGAATTGAAGAA
ACTGGAAGATTTATCCGAAGCTATTGTCAACGATTTCGCTTACATGAGAG
CGAGAGAAGAACAGATGAGAGATACTAACGAATCAACCAGCGACCGTGTC
TTATACTTCAGCGTTTTCTCCATGTTATGTTTAGTTGGGTTGGCCATGTG
GCAAATCTTTTATCTTCGAAGATTTTTCATTGCCAAGAAGCTTATCGAAa
actaaGAGTTAGGCGGGGTTAAGCTGTTTGGATCTACTAacaacgtgatc
gtgataATTGTAAACAGTGTTTTCGGGTTTTCAAATGCCACGTTCATCAG
AGACGCTGCACACAAGCTAGCAACAAAGATGGCGACGATTCTGAGTCTTG
TAACTTTCTGTTTGTCACTGGTATTCCATGCAAATGGTTTGTCATTTACA
TTATCAGCAGGCAATAAGAAGTGCCTAAGGGAAGAAGTTCACAAAGATAT
CCTTGTAACTGGCGAATACAAACTTTCAGACGCCCCTATTCAAACACATT
TGACGGTGATTGACACAAATGGACATGTTTTGTACAAAAAGGAAGAAGCT
TCCAGAGGAAAGTTCGCTTTCACTACTGATGATTATGATATGTTTGAAGT
ATGTTTCCAAAGTGAAGGAACTCACGGACAAGGAATTGATCGTGAAATTT
CATTAGAAGTCAAAACTGGTGTAGAAGCTAAAAATTATGATGACCTTCAA
AAGACTGAGAAATTGAAACCAATGGAATTAGAATTGAAGAAACTGGAAGA
TTTATCCGAAGCTATTGTCAACGATTTCGCTTACATGAGAGCGAGAGAAG
AACAGATGAGAGATACTAACGAATCAACCAGCGACCGTGTCTTATACTTC
AGCGTTTTCTCCATGTTATGTTTAGTTGGGTTGGCCATGTGGCAAATCTT
TTATCTTCGAAGATTTTTCATTGCCAAGAAGCTTATCGAAaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000831XLOC_000831Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001592-proteinTCONS_00001592-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001592-exon-sc0000011-1491911889:646851..646903TCONS_00001592-exon-sc0000011-1491911889:646851..646903Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1510915933:646851..646903TCONS_00001592-exon-sc0000011-1510915933:646851..646903Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1575043694:646851..646903TCONS_00001592-exon-sc0000011-1575043694:646851..646903Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1491911889:647187..647435TCONS_00001592-exon-sc0000011-1491911889:647187..647435Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1510915933:647187..647435TCONS_00001592-exon-sc0000011-1510915933:647187..647435Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1575043694:647187..647435TCONS_00001592-exon-sc0000011-1575043694:647187..647435Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1491911889:655832..655943TCONS_00001592-exon-sc0000011-1491911889:655832..655943Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1510915933:655832..655943TCONS_00001592-exon-sc0000011-1510915933:655832..655943Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1575043694:655832..655943TCONS_00001592-exon-sc0000011-1575043694:655832..655943Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1491911889:657252..657328TCONS_00001592-exon-sc0000011-1491911889:657252..657328Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1510915933:657252..657328TCONS_00001592-exon-sc0000011-1510915933:657252..657328Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1575043694:657252..657328TCONS_00001592-exon-sc0000011-1575043694:657252..657328Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1491911889:657616..657742TCONS_00001592-exon-sc0000011-1491911889:657616..657742Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1510915933:657616..657742TCONS_00001592-exon-sc0000011-1510915933:657616..657742Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1575043694:657616..657742TCONS_00001592-exon-sc0000011-1575043694:657616..657742Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1491911889:658124..659145TCONS_00001592-exon-sc0000011-1491911889:658124..659145Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1510915933:658124..659145TCONS_00001592-exon-sc0000011-1510915933:658124..659145Clytia hemisphaericaexon
TCONS_00001592-exon-sc0000011-1575043694:658124..659145TCONS_00001592-exon-sc0000011-1575043694:658124..659145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:646851..659145 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
133.68	132.946	136.004	138.826	117.72	91.6503	263.027	267.281	152.302	161.22	102.707	113.054	57.611	52.0384	75.4855	92.3988	67.5968	68.7123	27.6198	54.2742	51.0813	52.7193	76.9501	76.0579	46.6354	52.7151	56.1939	37.3689	95.238	68.4358
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00001592 vs. Swiss-Prot (Human)
Match: TMEDA (Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.505e-69
Identity = 122/190 (64.21%), Postives = 160/190 (84.21%), Query Frame = 3 
Query:  183 GLSFTLSAGNKKCLREEVHKDILVTGEYKLSDAP-----IQTHLTVIDTNGHVLYKKEEASRGKFAFTTDDYDMFEVCFQSEGTHGQGIDREISLEVKTGVEAKNYDDLQXXXXXXXXXXXXXXXXXXXXAIVNDFAYMRAREEQMRDTNESTSDRVLYFSVFSMLCLVGLAMWQIFYLRRFFIAKKLIE 737
             +SF L   ++KCLREE+HKD+LVTG Y++SD       +++HL + D+ GH+LY KE+A++GKFAFTT+DYDMFEVCF+S+GT G+  D+ + L++K GVEAKNY+++ K EKLKP+E+EL++LEDLSE+IVNDFAYM+ REE+MRDTNEST+ RVLYFS+FSM CL+GLA WQ+FYLRRFF AKKLIE
Sbjct:   31 AISFHLPINSRKCLREEIHKDLLVTGAYEISDQSGGAGGLRSHLKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGT-GRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
The following BLAST results are available for this feature:
BLAST of TCONS_00001592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMEDA1.505e-6964.21Transmembrane emp24 domain-containing protein 10 O... [more]
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