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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001592 ID=TCONS_00001592|Name=TCONS_00001592|organism=Clytia hemisphaerica|type=transcript|length=1640bp GTGAGTTAGGCGGGGTTAAGCTGTTTGGATCTACTAacaacgtgatcgtg ataATTGTAAACAGTGTTTTCGGGTTTTCAAATGCCACGTTCATCAGAGA CGCTGCACACAAGCTAGCAACAAAGATGGCGACGATTCTGAGTCTTGTAA CTTTCTGTTTGTCACTGGTATTCCATGCAAATGGTTTGTCATTTACATTA TCAGCAGGCAATAAGAAGTGCCTAAGGGAAGAAGTTCACAAAGATATCCT TGTAACTGGCGAATACAAACTTTCAGACGCCCCTATTCAAACACATTTGA CGGTGATTGACACAAATGGACATGTTTTGTACAAAAAGGAAGAAGCTTCC AGAGGAAAGTTCGCTTTCACTACTGATGATTATGATATGTTTGAAGTATG TTTCCAAAGTGAAGGAACTCACGGACAAGGAATTGATCGTGAAATTTCAT TAGAAGTCAAAACTGGTGTAGAAGCTAAAAATTATGATGACCTTCAAAAG ACTGAGAAATTGAAACCAATGGAATTAGAATTGAAGAAACTGGAAGATTT ATCCGAAGCTATTGTCAACGATTTCGCTTACATGAGAGCGAGAGAAGAAC AGATGAGAGATACTAACGAATCAACCAGCGACCGTGTCTTATACTTCAGC GTTTTCTCCATGTTATGTTTAGTTGGGTTGGCCATGTGGCAAATCTTTTA TCTTCGAAGATTTTTCATTGCCAAGAAGCTTATCGAAaactaaaatggaa aaaaacgaaaacattcaaaaaagcATTCACCTACAATATCTGCTCTGTGG AAAATATCTAATTTACATCTATTTTACTGAAATGTTTTGCGATTTAGTAT TAAAATTAGATACCTCAACAAAAATGTAATCTATTTGACATTGTCCATCC GTTCTCGGATTTGTCCATCCGTTCTCGGATTAAATATCTGTTTTTAAGTC AAATCTcttaaaaaattgatgtttagaAAGAGATTTCGTTACTCCCTCTA AATTTGTTgccttttgtttgaaaataagTGATACATTTTAAAAAGACTTT TCTAAACTCTTAAAAATCTTCACAATGCTTAACCCTTGTTCTATAGGCTC TTTTCTAAACATCCATTAGCTTTTTCCATTTCCTTGTTTAGAAAACAGTA TTATATTCTATGTATTCCTTGAATAATTTtgtgttgatatttttattttg tgtgaTATTCCAAACCAACCAAATAGGTTTTGTATATTTCAAACTAAAGa ggaattttgcaatttttttttgggtgCTGTGTGGTGTAGTGGCATTGAGT AGACTAGTTTTCAAATGTCAATATAGCTTGACTTCTTACATccacttctt tctttctttctataCTGAATACATCATAACTCTTTTTAGTTTCTGAATAT TCCCCTCGCAATTTGAACACTGTACTTTATAGTTAACAgaacaatattca atttccaatTTTGAGTATAAATTTTTCGATTCTATGGTACAgctattttg gtaattttttctCGACGACTTTAgaattttaacaattatttAATTTCATA GGCTGGAAAGTAAACattgaaatttttagattttttactttctccacgca atttttaatgaaaatacaaaCTTAAAATCCTATACGGCTA Run BLAST on NCBI protein sequence of TCONS_00001592-protein >TCONS_00001592-protein ID=TCONS_00001592-protein|Name=TCONS_00001592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
ELGGVKLFGSTNNVIVIIVNSVFGFSNATFIRDAAHKLATKMATILSLVT FCLSLVFHANGLSFTLSAGNKKCLREEVHKDILVTGEYKLSDAPIQTHLT VIDTNGHVLYKKEEASRGKFAFTTDDYDMFEVCFQSEGTHGQGIDREISL EVKTGVEAKNYDDLQKTEKLKPMELELKKLEDLSEAIVNDFAYMRAREEQ MRDTNESTSDRVLYFSVFSMLCLVGLAMWQIFYLRRFFIAKKLIEN Run BLAST on NCBI transcript from alignment at sc0000011:646851..659145+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001592 ID=TCONS_00001592|Name=TCONS_00001592|organism=Clytia hemisphaerica|type=transcript|length=12295bp|location=Sequence derived from alignment at sc0000011:646851..659145+ (Clytia hemisphaerica) GTGAGTTAGGCGGGGTTAAGCTGTTTGGATCTACTAacaacgtgatcgtg
atagtaagaaaatttaacttttaactTAATTTAACGTGATTTGGAATTTC
TTTTGCGTGATCCTTTATCTTCTTCTTTTGCTTCAAATCATCAGGGTGGT
GCCAGGACCCACTTTGACGTCGCGTTATCTCGTGATTTTGGGTCcctcaa
attcaaaattttaagttcaatCTTTGAAATGATAATCATTTTGTTTGCAA
AGCCGAATCGAACATTTTACTCCGATgtcttctttgaaattttggccgCT
ATTTGTTGCTTTTAGGATTACGCATACATTTTATAGATTGTAAACAGTGT
TTTCGGGTTTTCAAATGCCACGTTCATCAGAGACGCTGCACACAAGCTAG
CAACAAAGATGGCGACGATTCTGAGTCTTGTAACTTTCTGTTTGTCACTG
GTATTCCATGCAAATGGTTTGTCATTTACATTATCAGCAGGCAATAAGAA
GTGCCTAAGGGAAGAAGTTCACAAAGATATCCTTGTAACTGGCGAATACA
AACTTTCAGACGCCCCTATTCAAACACATTTGACGGTATGTTTTTTATAC
TCTCCACTTCTTTCACTgacaattcaattcaattcaatttcaattcaaaa
catatatttacccgAAGGAAGGGACACCAAGTTTAGAAACCTAATTACAA
ATGGTGCAACCTGTACCGTCAGACCGTAAGGAtagcttgcatcagtggag
gctaacatggatagccctcaaatgaatgacctggttggtctttaaaatat
aaacttaaattaaaacaaaaatggtagagtagagctgcaagcggagctgc
atagttccAGCAATCTCAATCatcgaacggaatcaacgatcgaaccagtc
gaaccaaatcaaacgcaatcgaccgattgaaattcgattgtcgaacgcaa
tcaaatctcaatcgaacgtcaaaattctgggaaatattcgatttggttcg
attgttgttcgactggttagatcgtcgattccgttcgattcagattgtct
ggctttatttttgcagcttcccaacatccaaactctcaaacatcacaagc
cgaatgaaattaatttcgatttcccgtagaaattatgcgatgaacaatcc
gggggtcaatgaatcgacgatcgaacgcaatcgaacatcaatcaaacaca
atcgaatatcaattgaatctgaaaattgcggtaatattcgattgagattc
gattgcgttcgacaatcaaatttcaatagaccttttttcaaagagaccag
cctgttgaataattatgtagtccagcagaaaaacaacgatacagtcatgc
ataattactgtatcatgcatattgtaataatttatGCATGGTTGTATCAT
TTTTCTTCTGCTGGACtgcataattattcaacagggtggcctctttgaaa
aaaggtctatcgattGATTGCactcgatttggtttgactggttggctggt
catattgggcgttttggagttaccaccctcgaagcagtGGGCGCCTTTGC
CATTccgcaactctgtccaccattttaaatgagttaacaatagatctGAA
AGGGCGCTCTCATCAAGAGAGAtcatttgctttggtctccggctttggga
agtagtaatgttttcgattgttttcgatggaaaatggtaagaaacttaag
tttacaagtgtcattcagtttttgctggctgatagaatggcaggatcctg
gatggtttccttAACtgtcgattgagatcgtctggatagttcatttgatt
tgttttgaaatttttctgcttttggTTGGTCAGGCTaggcatttgatggc
tatgaAAGTTTCTGTCCACTAATGCAAGTTACACGACTTCAGGGTATCAT
CTCTTTTTATTGTATCAAAATATACTGTAATTGACCTTAAAATCACAGCT
ATAGCCATCATCCACAATAGACAGTCAGGAGTTTTTGCCTAAGGACCACC
CTGTCGATTCCCCGGACGATATAtggggcaaatgtctggggaacgaaaaa
agaatatttctATCCCAGGACAAACAAACCGCGTGGCTGGAGAAAAGTGA
ACGCGTGGTCACGAGTTAACACGCGGACGACACACGGCGGTCAACTAAGT
TCATGTGAATGCATCAAAATTGACGCCCATGTAATCGCCTGATCATATAA
GTACATTGCGCAGACCGCGCGTTCAGTCCAGGGTAAGtttaaataaacca
gccgaggctggaaggtcagccaatagagcttagctagatagctttaataa
gtgggttaacagatgtaagagatgtactgaaacaNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNaatactttggtacaacactgacttttatcacatctgac
tatcgcttgagccgccatcttgaaacaccacattatgatctgttaAAACA
ACGTACGCTAAAAGtaaccaaaaagttaacccgatcggaagaaagttaag
aaatcaaagtgagatcggaaaatcggattttttttttgccgtcttatgga
agaagaagaagaaatgaattttacggatttgaatgctcagcttaggctga
ccaaaaagTAGTGTTAAAATCCCCGGACACGCAACAAGAAAATCCCCGTC
ATGCGCAAGATGATTGGAAGGTCAAAAATCAGcagagtaaaaaaaaatct
cctAACTAAGGTAAAAGATATCTTTTAACTAGAGAATTATCcctggcagt
tagtcacactagcgtcctgccaaaatgtgtatcaaagattaatgctgtga
TAGCGCtttatcgtttacttgactctcaagcaaaaaaatgtggcgcaaaa
cttctaaagggattcatgaaaaaataacccggcgctttttaatgaaatta
acattttcaaaaactttgagaaattccctaaaatttgagccatagatgaa
aaaatttgagccaagccaaccttgaaaactaatttgaagatcaacttccc
aactTCCCATGCAGTCTAGCAGAATGttgtcccatgtttcgaccaatcgt
ctcaagttagagcagttgactgtaacaagatgactataatgtcaagatgt
caattaatgtacgatcaaaaaagtgtgagttgtaaaaataattacctcta
ttattctgaatctgttgctcgtgtttaaaaaattaacaaatttgtaataa
aaaattatgttttgtataaggagcaattattgttatttggttcaattggt
tgagtgtgtcaaatctttcagtttagttgacactttggtatcttcatttc
GTCACAGCGAAAGAGATtgttccctgcaatgcaggttcagTCTGATTGGC
CAGATTTTGTGCCTATTACTTAGCAATACTTTTGCatgcattttgataat
ttcgatctgcacgcataatttatggaaaaagctgactctgcagaaaaaag
gaaaacaaatgaaaaatgaaaacatgcacacttttttttataagaatatc
ttctataagaatatcagggtgaaaattggccaaatcgtaagatcGTAAGA
AACTCTAGGGcgagtttcacagaatttgataataatacagtcattttgta
tttggttaacagaaaaaaactaCTTCCTTTGTCAGAGAGGAATTGAAGCT
TTGAGAAAGaaaggggggggtcggtactaaaatccaagacatatatgagt
actaaaaggttttttgacaatttttgacatacccccacctaatttttgaa
aaatgaattttagtactaaaaattttttttacagtttAGCATAGTGACCA
CCTAAATTAGGAATTCGTTTCAGAGAATGGGTCTTTAGACTTTCAATAAA
ATGCCAACTCTGGTTATTTAAGCTGGCAATGAACCTGATCTATCTCTCTA
TTCTAGATATATAAAGACTCAAAAACAGTCAAGACACTTTTGCTCTGCTC
TACTTTAGTTATTGCAaagattgattggttatttttcaccTCTAATTTAC
AGCTTGCTATTTCTTTTCTGTTCAGTTATCCATGgttctttacaaaaaca
aagcattcaactttgaaaacattttttgaaaacaaaatttcttgaagacc
ccacctaatttaggattttagtacacatggtactaaaatgctttaatgct
ttttttgtaataccaccacgtcactaaaagtcatgatgtctaaaatttta
gtactgaccccccccctggaaaGAAACGTAGTTTTAATCCAAATGTttac
tcaaaagtccaaaactctcaaattgatcatttctcatgtttgtaaaaaag
tcaagtctaaaaaagtaagaatacgttaagaatatttcaccctcaatttt
ggcactttcttaagaatacttgaccctcatccaaagtacactattctgaa
aatccacttttttattgcgtgaatgcgtgaatctcggctattttgtgcgt
gaatacgtgaatttctcttttttcccaCCAATtttgtgcagttttcccga
ttttccaatgtttccctgatttttcccgaacattttctgattttctgaaa
aatcgggttattgcgtgaaactcagggaaaatttgcgtgaatgcgtgaat
ttcattctgtgtcagactaatccaCCTGCACCAAGGCGaacacgaaaaaa
aaatttgtttccggtccaccgggtgacaaaaaaaacactcacccAGCCGG
ccgcaaaataattttttttgcttaatttcgatcccaaaactcgatttttt
aaagcactcgtaGAAGTAAAAATTATGGTCTTCTTTACCTTAAATCTGTA
GTAACTTGACAACCCtacaggcttcggcataagaaaaattcacgtgtgat
catcgcacgcctagattttgatttatagtggtctaggcgtgcgtttattc
aaatacttaattttcatcttttatattttcaattgtgttacaatatctct
aggaactggacactctctttcattttgaatatttatcttcaattgCTAAA
GGCTCCAAACTGAAATTAAGAAgggaacttttttgagaaaaaagtagacT
GAGAGAAATATttccacaattttttttttaaatcctcactttatgaatgt
ttctttttattttactcacaagtcagcatgattccttttataaaaacaaa
gctgtttacttactgaaaagtccccactttgctgaatgtttctatttatt
ttactcacaagtcagcatgattccttttataaaaacaaagctgtttactt
actgaaaagtccccactttgctgaatgtttctatttattttactcacaaa
tcagcatgattcttttataaaaaccaagttgtatattaaaaaaaatattc
ttaaaagttgagttgcaagcaagaattaacaaaaacaatgcagggtttag
tttgagatgaataaaatttcatttctataacaATGATCAGGATAAAACCT
TCATTCCAAGTGATTTCTAGGCATGCATTTTACAGTGGAATATGAAATAT
CACGTGACaaatcacacgcctcaaacTGCTCAAACACTGattcacaaaag
tttttcaagcaaacaaactaaccctaaccctaacaatgCTGTAcaaaaaa
aatgcggccgggtgacgacgaaataaattttcatcctgccggtggaccgg
aaacaaaaatttttttgggttcgcccaagctctataattttagaactttg
tgaggtgaggtatttttttgtttttttctaaaattatgaactTGTATTCC
CAGGCTAGAAGCAAACTAACtgttttaaatgatcaattaggtcaATAAGA
TTGCAAAAACGAGTggagagaaaaattttgaccattttgctggtccccat
gtgaCATCATCACTTTTTGTgaggcttgaaaatgaaagtgaaaataagAA
GTTCAAATATGGCTCAAATAAAAGATATTCATCCCaaggtttcaaaaaat
atcacaacatatatctgaaaatcaatatttcagaAGCTATAAAAGAAAAT
AGctcaaaaaatgacgtcatcggcaattcaaaaatcatcaaaatcgaaaa
ttttttgtttcatttgataGAGGATGAGCTAGGGAACAAAGAGTATTACT
ACAAAAAAATCGCCTAAAAAATAGGCCCCTGTCAGCCAAattgtaattca
ttaaatttgccTGCAAAATGTTAGGTTAGGGCACACCCAGAAATCTTTAa
aagcttgagagtcaagtcaaACGCATTTCACAAAATAACGTTTTTCTTAG
CAATATTTATTGCCCTCtatcaaatgaaacaaaaaaaaaattaattgccG
ATggatgacgtcaattttttagcaatttataAATTTGATCCATGCTAGCC
TCAAAAATTAATCAGAGAAAAATCTACAGGTCAAAAGACACCCACCTAGA
TCCATTCACAGCCAGACAGGCTTTTTCCTGatatttcaccatttttgagC
AGCAATTATTTTAATTCAGCATGTAATTGAGGCCTTATAAATGGAAGGGC
TAGCTTGgtaattgaataacaaattttaGGTGGTTGAACTTTAGCAATCA
GTCCTTTAATTTTGTTTCTAGCTTTCAATTTTCATGACATTGTCTTAGGA
TTTGGAACTTGATTCAGTTAACtatcatccttgttgttgcaaacaCATCT
ATAGATGACTGatgtatttttttctaaaactaaCCTTTAACAACTCTGCA
TTGATAGAATCattattattaatattattgGGATAAGTTAAGATTTCTCC
TTGGTTCCCTCCACTTGAAAATTGTCACAAGCAATCAATTGACTGCATTC
TCTAATTCATTGTCTCTTTGCTGCTTATATAACTTAAACGACTCCCTGCA
GCAAAGAGACAATATTTGAagtttggtttttttattcaggcaccattttt
caatttctactATTCACTATAACATTTTCAGGTGATTGACACAAATGGAC
ATGTTTTGTACAAAAAGGAAGAAGCTTCCAGAGGAAAGTTCGCTTTCACT
ACTGATGATTATGATATGTTTGAAGTATGTTTCCAAAGTGAAGGTAAGCA
ACCCCGACCAACTATTACTCATTTTCTAGCTGTTATTTGCAAAGTCTTAT
TGGATATTACATATACGAGAAattaattctcaacttcagttgagctagat
aaaatctgagaatgtctgtctgtctgtctgtctgtctgtctgtctgtctg
tctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtcagtcacct
caaaactttggggcaggctggagactttaaaaatggtccgatttggctga
aattttgcacacttgatccttgggtgaatccctagttgtttttttcattt
ttaagggcgtggtcacgagttttagtCTCAAAACGTGGCTAAAACTTTAG
AGCAGGCTGGAGACCTCAAAAacggtcggatttggctgaagtTTGACACC
CTTGTTccttgggaaaatattttgggatgattttttatttttcgaaaatt
atcatttttgaggcctggggacgagtttttagcctaaacgaggctaaaac
ctatttaagaaatgctaaaattttccttaagccattaagtttacaattgg
gcctacgaattatttcaaagatactgaagttNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNTTTTTTAtaatcaaaaagaagaaagattatAAAGATCATA
TTTGACAACGCTTCAAGCAACATAATAGTTATTTTCTTATTGACTTTACA
GGAACTCACGGACAAGGAATTGATCGTGAAATTTCATTAGAAGTCAAAAC
TGGTGTAGAAGCTAAAAATTATGATGACGTAAGTATGATGAAACCTTTTT
GGTTTGCAGGGTTAAAACAGGCCCACCAAAACCtagaaaaaatgtgtttt
tttttttcaaaaaagttaccAGAGATCTTTTTACGGACATACTGTATGAG
ATACAAGCCAGGGAGTTTCTGTAGAGCCAGAGCCAGGAAACTATGTTTCT
TAGATTCATATTTCATATTTGGCGCACCGAATAAAAGACtttcttttgta
aaagattGACTGACTTCAATTATTCGACCAAAGATTTTAAGATGTAATTT
TACTTCACTTTACAGCTTCAAAAGACTGAGAAATTGAAACCAATGGAATT
AGAATTGAAGAAACTGGAAGATTTATCCGAAGCTATTGTCAACGATTTCG
CTTACATGAGAGCGAGAGAAGAACAGATGAGAGATACTAACGGTAAGATC
GACTTTTTCTTTTACCTTATCGGCCcattttacaccggcccttattggcg
ttatctttgggctcgtggcgtaataagggccggtgttaaaAGGTCCGGCG
TAAAAAGAGCCGATAAGGTAGTTGTAAACTATAtgtaaattttctttgtt
cAGCCAAGGATCTTAAGTAGGATTCGGAGATTAATTAATAGCATTTTGTT
TCATAATTTGGAAAAGTTTGTGAAATTTTTGCTTCAGCGTACAAGCAAGG
TGAGTTAGCAAATTCAGGTAAATTCGATAAAAAGTAAGAAAACAGCCAAG
TCTCAAGAAAATTACTGTTTTTCGCAAATCGAATCATTACATTAAtcctt
tttatcttttttttaattcacaGAATCAACCAGCGACCGTGTCTTATACT
TCAGCGTTTTCTCCATGTTATGTTTAGTTGGGTTGGCCATGTGGCAAATC
TTTTATCTTCGAAGATTTTTCATTGCCAAGAAGCTTATCGAAaactaaaa
tggaaaaaaacgaaaacattcaaaaaagcATTCACCTACAATATCTGCTC
TGTGGAAAATATCTAATTTACATCTATTTTACTGAAATGTTTTGCGATTT
AGTATTAAAATTAGATACCTCAACAAAAATGTAATCTATTTGACATTGTC
CATCCGTTCTCGGATTTGTCCATCCGTTCTCGGATTAAATATCTGTTTTT
AAGTCAAATCTcttaaaaaattgatgtttagaAAGAGATTTCGTTACTCC
CTCTAAATTTGTTgccttttgtttgaaaataagTGATACATTTTAAAAAG
ACTTTTCTAAACTCTTAAAAATCTTCACAATGCTTAACCCTTGTTCTATA
GGCTCTTTTCTAAACATCCATTAGCTTTTTCCATTTCCTTGTTTAGAAAA
CAGTATTATATTCTATGTATTCCTTGAATAATTTtgtgttgatattttta
ttttgtgtgaTATTCCAAACCAACCAAATAGGTTTTGTATATTTCAAACT
AAAGaggaattttgcaatttttttttgggtgCTGTGTGGTGTAGTGGCAT
TGAGTAGACTAGTTTTCAAATGTCAATATAGCTTGACTTCTTACATccac
ttctttctttctttctataCTGAATACATCATAACTCTTTTTAGTTTCTG
AATATTCCCCTCGCAATTTGAACACTGTACTTTATAGTTAACAgaacaat
attcaatttccaatTTTGAGTATAAATTTTTCGATTCTATGGTACAgcta
ttttggtaattttttctCGACGACTTTAgaattttaacaattatttAATT
TCATAGGCTGGAAAGTAAACattgaaatttttagattttttactttctcc
acgcaatttttaatgaaaatacaaaCTTAAAATCCTATACGGCTA Coding sequence (CDS) from alignment at sc0000011:646851..659145+ >TCONS_00001592 ID=TCONS_00001592|Name=TCONS_00001592|organism=Clytia hemisphaerica|type=CDS|length=4446bp|location=Sequence derived from alignment at sc0000011:646851..659145+ (Clytia hemisphaerica) GAGTTAGGCGGGGTTAAGCTGTTTGGATCTACTAacaacgtgatcgtgat aATTGTAAACAGTGTTTTCGGGTTTTCAAATGCCACGTTCATCAGAGACG CTGCACACAAGCTAGCAACAAAGATGGCGACGATTCTGAGTCTTGTAACT TTCTGTTTGTCACTGGTATTCCATGCAAATGGTTTGTCATTTACATTATC AGCAGGCAATAAGAAGTGCCTAAGGGAAGAAGTTCACAAAGATATCCTTG TAACTGGCGAATACAAACTTTCAGACGCCCCTATTCAAACACATTTGACG GTGATTGACACAAATGGACATGTTTTGTACAAAAAGGAAGAAGCTTCCAG AGGAAAGTTCGCTTTCACTACTGATGATTATGATATGTTTGAAGTATGTT TCCAAAGTGAAGGAACTCACGGACAAGGAATTGATCGTGAAATTTCATTA GAAGTCAAAACTGGTGTAGAAGCTAAAAATTATGATGACCTTCAAAAGAC TGAGAAATTGAAACCAATGGAATTAGAATTGAAGAAACTGGAAGATTTAT CCGAAGCTATTGTCAACGATTTCGCTTACATGAGAGCGAGAGAAGAACAG ATGAGAGATACTAACGAATCAACCAGCGACCGTGTCTTATACTTCAGCGT TTTCTCCATGTTATGTTTAGTTGGGTTGGCCATGTGGCAAATCTTTTATC TTCGAAGATTTTTCATTGCCAAGAAGCTTATCGAAaactaaGAGTTAGGC GGGGTTAAGCTGTTTGGATCTACTAacaacgtgatcgtgataATTGTAAA CAGTGTTTTCGGGTTTTCAAATGCCACGTTCATCAGAGACGCTGCACACA AGCTAGCAACAAAGATGGCGACGATTCTGAGTCTTGTAACTTTCTGTTTG TCACTGGTATTCCATGCAAATGGTTTGTCATTTACATTATCAGCAGGCAA TAAGAAGTGCCTAAGGGAAGAAGTTCACAAAGATATCCTTGTAACTGGCG AATACAAACTTTCAGACGCCCCTATTCAAACACATTTGACGGTGATTGAC ACAAATGGACATGTTTTGTACAAAAAGGAAGAAGCTTCCAGAGGAAAGTT CGCTTTCACTACTGATGATTATGATATGTTTGAAGTATGTTTCCAAAGTG AAGGAACTCACGGACAAGGAATTGATCGTGAAATTTCATTAGAAGTCAAA ACTGGTGTAGAAGCTAAAAATTATGATGACCTTCAAAAGACTGAGAAATT GAAACCAATGGAATTAGAATTGAAGAAACTGGAAGATTTATCCGAAGCTA TTGTCAACGATTTCGCTTACATGAGAGCGAGAGAAGAACAGATGAGAGAT ACTAACGAATCAACCAGCGACCGTGTCTTATACTTCAGCGTTTTCTCCAT GTTATGTTTAGTTGGGTTGGCCATGTGGCAAATCTTTTATCTTCGAAGAT TTTTCATTGCCAAGAAGCTTATCGAAaactaaGAGTTAGGCGGGGTTAAG CTGTTTGGATCTACTAacaacgtgatcgtgataATTGTAAACAGTGTTTT CGGGTTTTCAAATGCCACGTTCATCAGAGACGCTGCACACAAGCTAGCAA CAAAGATGGCGACGATTCTGAGTCTTGTAACTTTCTGTTTGTCACTGGTA TTCCATGCAAATGGTTTGTCATTTACATTATCAGCAGGCAATAAGAAGTG CCTAAGGGAAGAAGTTCACAAAGATATCCTTGTAACTGGCGAATACAAAC TTTCAGACGCCCCTATTCAAACACATTTGACGGTGATTGACACAAATGGA CATGTTTTGTACAAAAAGGAAGAAGCTTCCAGAGGAAAGTTCGCTTTCAC TACTGATGATTATGATATGTTTGAAGTATGTTTCCAAAGTGAAGGAACTC ACGGACAAGGAATTGATCGTGAAATTTCATTAGAAGTCAAAACTGGTGTA GAAGCTAAAAATTATGATGACCTTCAAAAGACTGAGAAATTGAAACCAAT GGAATTAGAATTGAAGAAACTGGAAGATTTATCCGAAGCTATTGTCAACG ATTTCGCTTACATGAGAGCGAGAGAAGAACAGATGAGAGATACTAACGAA TCAACCAGCGACCGTGTCTTATACTTCAGCGTTTTCTCCATGTTATGTTT AGTTGGGTTGGCCATGTGGCAAATCTTTTATCTTCGAAGATTTTTCATTG CCAAGAAGCTTATCGAAaactaaGAGTTAGGCGGGGTTAAGCTGTTTGGA TCTACTAacaacgtgatcgtgataATTGTAAACAGTGTTTTCGGGTTTTC AAATGCCACGTTCATCAGAGACGCTGCACACAAGCTAGCAACAAAGATGG CGACGATTCTGAGTCTTGTAACTTTCTGTTTGTCACTGGTATTCCATGCA AATGGTTTGTCATTTACATTATCAGCAGGCAATAAGAAGTGCCTAAGGGA AGAAGTTCACAAAGATATCCTTGTAACTGGCGAATACAAACTTTCAGACG CCCCTATTCAAACACATTTGACGGTGATTGACACAAATGGACATGTTTTG TACAAAAAGGAAGAAGCTTCCAGAGGAAAGTTCGCTTTCACTACTGATGA TTATGATATGTTTGAAGTATGTTTCCAAAGTGAAGGAACTCACGGACAAG GAATTGATCGTGAAATTTCATTAGAAGTCAAAACTGGTGTAGAAGCTAAA AATTATGATGACCTTCAAAAGACTGAGAAATTGAAACCAATGGAATTAGA ATTGAAGAAACTGGAAGATTTATCCGAAGCTATTGTCAACGATTTCGCTT ACATGAGAGCGAGAGAAGAACAGATGAGAGATACTAACGAATCAACCAGC GACCGTGTCTTATACTTCAGCGTTTTCTCCATGTTATGTTTAGTTGGGTT GGCCATGTGGCAAATCTTTTATCTTCGAAGATTTTTCATTGCCAAGAAGC TTATCGAAaactaaGAGTTAGGCGGGGTTAAGCTGTTTGGATCTACTAac aacgtgatcgtgataATTGTAAACAGTGTTTTCGGGTTTTCAAATGCCAC GTTCATCAGAGACGCTGCACACAAGCTAGCAACAAAGATGGCGACGATTC TGAGTCTTGTAACTTTCTGTTTGTCACTGGTATTCCATGCAAATGGTTTG TCATTTACATTATCAGCAGGCAATAAGAAGTGCCTAAGGGAAGAAGTTCA CAAAGATATCCTTGTAACTGGCGAATACAAACTTTCAGACGCCCCTATTC AAACACATTTGACGGTGATTGACACAAATGGACATGTTTTGTACAAAAAG GAAGAAGCTTCCAGAGGAAAGTTCGCTTTCACTACTGATGATTATGATAT GTTTGAAGTATGTTTCCAAAGTGAAGGAACTCACGGACAAGGAATTGATC GTGAAATTTCATTAGAAGTCAAAACTGGTGTAGAAGCTAAAAATTATGAT GACCTTCAAAAGACTGAGAAATTGAAACCAATGGAATTAGAATTGAAGAA ACTGGAAGATTTATCCGAAGCTATTGTCAACGATTTCGCTTACATGAGAG CGAGAGAAGAACAGATGAGAGATACTAACGAATCAACCAGCGACCGTGTC TTATACTTCAGCGTTTTCTCCATGTTATGTTTAGTTGGGTTGGCCATGTG GCAAATCTTTTATCTTCGAAGATTTTTCATTGCCAAGAAGCTTATCGAAa actaaGAGTTAGGCGGGGTTAAGCTGTTTGGATCTACTAacaacgtgatc gtgataATTGTAAACAGTGTTTTCGGGTTTTCAAATGCCACGTTCATCAG AGACGCTGCACACAAGCTAGCAACAAAGATGGCGACGATTCTGAGTCTTG TAACTTTCTGTTTGTCACTGGTATTCCATGCAAATGGTTTGTCATTTACA TTATCAGCAGGCAATAAGAAGTGCCTAAGGGAAGAAGTTCACAAAGATAT CCTTGTAACTGGCGAATACAAACTTTCAGACGCCCCTATTCAAACACATT TGACGGTGATTGACACAAATGGACATGTTTTGTACAAAAAGGAAGAAGCT TCCAGAGGAAAGTTCGCTTTCACTACTGATGATTATGATATGTTTGAAGT ATGTTTCCAAAGTGAAGGAACTCACGGACAAGGAATTGATCGTGAAATTT CATTAGAAGTCAAAACTGGTGTAGAAGCTAAAAATTATGATGACCTTCAA AAGACTGAGAAATTGAAACCAATGGAATTAGAATTGAAGAAACTGGAAGA TTTATCCGAAGCTATTGTCAACGATTTCGCTTACATGAGAGCGAGAGAAG AACAGATGAGAGATACTAACGAATCAACCAGCGACCGTGTCTTATACTTC AGCGTTTTCTCCATGTTATGTTTAGTTGGGTTGGCCATGTGGCAAATCTT TTATCTTCGAAGATTTTTCATTGCCAAGAAGCTTATCGAAaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001592-exon-sc0000011-1491911889:646851..646903 | TCONS_00001592-exon-sc0000011-1491911889:646851..646903 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1510915933:646851..646903 | TCONS_00001592-exon-sc0000011-1510915933:646851..646903 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1575043694:646851..646903 | TCONS_00001592-exon-sc0000011-1575043694:646851..646903 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1491911889:647187..647435 | TCONS_00001592-exon-sc0000011-1491911889:647187..647435 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1510915933:647187..647435 | TCONS_00001592-exon-sc0000011-1510915933:647187..647435 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1575043694:647187..647435 | TCONS_00001592-exon-sc0000011-1575043694:647187..647435 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1491911889:655832..655943 | TCONS_00001592-exon-sc0000011-1491911889:655832..655943 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1510915933:655832..655943 | TCONS_00001592-exon-sc0000011-1510915933:655832..655943 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1575043694:655832..655943 | TCONS_00001592-exon-sc0000011-1575043694:655832..655943 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1491911889:657252..657328 | TCONS_00001592-exon-sc0000011-1491911889:657252..657328 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1510915933:657252..657328 | TCONS_00001592-exon-sc0000011-1510915933:657252..657328 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1575043694:657252..657328 | TCONS_00001592-exon-sc0000011-1575043694:657252..657328 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1491911889:657616..657742 | TCONS_00001592-exon-sc0000011-1491911889:657616..657742 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1510915933:657616..657742 | TCONS_00001592-exon-sc0000011-1510915933:657616..657742 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1575043694:657616..657742 | TCONS_00001592-exon-sc0000011-1575043694:657616..657742 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1491911889:658124..659145 | TCONS_00001592-exon-sc0000011-1491911889:658124..659145 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1510915933:658124..659145 | TCONS_00001592-exon-sc0000011-1510915933:658124..659145 | Clytia hemisphaerica | exon |
TCONS_00001592-exon-sc0000011-1575043694:658124..659145 | TCONS_00001592-exon-sc0000011-1575043694:658124..659145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000011 | supercontig | sc0000011:646851..659145 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR009038 | GOLD_dom |
Vocabulary: Biological Process
Term | Definition |
GO:0006810 | transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006810 |
transport |
cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00001592 vs. Swiss-Prot (Human)
Match: TMEDA (Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2) HSP 1 Score: 226.098 bits (575), Expect = 1.505e-69 Identity = 122/190 (64.21%), Postives = 160/190 (84.21%), Query Frame = 3
Query: 183 GLSFTLSAGNKKCLREEVHKDILVTGEYKLSDAP-----IQTHLTVIDTNGHVLYKKEEASRGKFAFTTDDYDMFEVCFQSEGTHGQGIDREISLEVKTGVEAKNYDDLQXXXXXXXXXXXXXXXXXXXXAIVNDFAYMRAREEQMRDTNESTSDRVLYFSVFSMLCLVGLAMWQIFYLRRFFIAKKLIE 737
+SF L ++KCLREE+HKD+LVTG Y++SD +++HL + D+ GH+LY KE+A++GKFAFTT+DYDMFEVCF+S+GT G+ D+ + L++K GVEAKNY+++ K EKLKP+E+EL++LEDLSE+IVNDFAYM+ REE+MRDTNEST+ RVLYFS+FSM CL+GLA WQ+FYLRRFF AKKLIE
Sbjct: 31 AISFHLPINSRKCLREEIHKDLLVTGAYEISDQSGGAGGLRSHLKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGT-GRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 219
The following BLAST results are available for this feature:
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