TCONS_00001498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001498
Unique NameTCONS_00001498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001498 ID=TCONS_00001498|Name=TCONS_00001498|organism=Clytia hemisphaerica|type=transcript|length=2176bp
AGAAAATGTTGAGCTTTTATTACCACTTGAAGCGGTTTTGACAATAAAAA
TGGAAACTAATCAACATGATACTAATCACATCGCTCTAATTAATGTTGAA
ATGAATTCAGAAAGTTTTGTACCGGAAAACCGAGAAAGCGTGGTAGATGA
GAATAACAATGGCATTGATTTGAATAATCTTGTTCATAAAAACACTCATC
ACACTTCTGCTGAAATTGATACTGTCCATACAGTAATTCATGAAGACGAA
TCTGTTAATGAAAGTGAAGATGATTGTATGCATACAGAGCCTAAAACACC
tggtaaaaattgcaaaatcaatAATTGTGATAAAACTGATGGAGTTACTG
AAAATGGGGACATTTCCAATGAGGctgaaattgatgatgatgatgatgat
ttgaGAGCTTTCATTGATGTGGACACATTTGTTTTAGCAAACGAATGTCG
TGTAGAGTTAAATGATTGTCTGCGTAATGAAAAGGACAAGACTGTTGATA
ATGGTAGTGATAATTCAATTTGTGTCGATAAAAACGAAGAAAATATGGAA
AGTTTCGTTGAGGACGAAAACGATGAAAATTTACTATCGAACCGAACCAT
ATCCAGgattaaaaaacattttacacATTTAGAAAAAGGAGGAGATGAAA
TTTCTTTTCggattgttttgaaatcaaactcgagattttattacaaaact
tgTGGCATTCAAAAAATCCATGAAAATCCACATCAATTGGATGAAATAAT
GTTTTTCGAAGAAACATCATCGCAACCGAATATTCGTTTAATCACAGAAT
TATACGCCCTAACGCAAAATCAATCACAACAATATCTCATAAACAAATAC
CCAACAATATTATTCATTTCGCAGATTCAAACCGTAGATTGCATATTCTC
ATTATTTCTACTGTACGTTCGAACGAATGTTGATTGCCAAATAGTTGGTA
CAATACTCTGCAATAACAACAACAATCAAGCGAAAGTGTTGAAAGAAGCG
TTGACCGAATTCAAAAAGATCAACAGTTTTTGGACACCCAAATATGTAGT
GATTGATCCAAACCAAGTCATCCTTAACACTGCTGAAGAAGTATTTCCAG
acTCAGAACTATTCTTTGATCCCGAAATGTGTGTTTACAATTGGGAAAAG
CATCTCTCAAATCCATTGAATGGTCTAAGAGAGCATTCAGAGCAGTTATT
TCATGACTTGAAAGCACTTCAAATGTGTTCAAAGAAAGGTCAATATCATG
ATTTGGTTCAAGAAATGAGGGATAAGAATATTTGTAATGATAGAAGCTTT
CGAGAAGAATGGCTTATGAATGCGAAGAAATGGGTTTTCTTGCCAAATAA
TCTACAAAGTCTCCTCAGAGAAGATTGGATTGTTGAATGCAAAAAACTTT
ACGAGACGACACTCGAGAAACATTCGAACGAATTGGACATCTTTGATCTA
CTGCTCCATATTACTGACATAATCCCAACGTCCAGATTCCAAAGATACTG
TCTCAAAAACAGGGAATTATACATCAATGTACAAAACTCGTTCACGCGGA
AGTCAATCCGTAAATTTGGTCTGCCTCTCTTTATGATATCTAACTGTGCA
GCAATTCTGAGTAAATATAAAAACACATCAACGCACACAACTGTTGTAAA
TATTAGCCATCGGACTTATGAAGTTGTTGATGGCGAGGAGATGTTCACAA
TCCACCTTGGTAACCAGAGAGAATTCCCATCTTGCACATGCGCAGTATGG
AAAACGTATTCTATACCTTGTAAACACATTTTCCGTGTCTTGAAGAAATA
TTCACTGGATTATGACTCTTTGAGCCCTATTTACAGGGCTAGCCCGTATT
TCgatattgatttttcatgtatggaAAAGGTGAACAAAGATACGGCGAGA
TCGATGATCACATTCATTCCATCTAaagaggatattttgaaaagcaTAAG
AAacctttgaatattttttatctttcccttttttAACGTTTAGATATTTT
TGAGGATTTCTTAGTGTACAacattttttacccttttttgaatttagtta
ccgttttttagatttttaaaaatatttttcatattttttgaaactatttt
tcatatttttcaaactatttttcatatttgttgAGTTTCgcagttttgtt
ttgattttcatttcattccatCCTTT
Run BLAST on NCBI

transcript from alignment at sc0000010:801784..808831-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001498 ID=TCONS_00001498|Name=TCONS_00001498|organism=Clytia hemisphaerica|type=transcript|length=7048bp|location=Sequence derived from alignment at sc0000010:801784..808831- (Clytia hemisphaerica)
AGAAAATGTTGAGCTTTTATTACCACTTGAAGCGGTTTTGACAATAAAAA TGGAAACTAATCAACATGATACTAATCACATCGCTCTAATTAATGTTGAA ATGAATTCAGAAAGTTTTGTACCGGAAAACCGAGAAAGCGTGGTAGATGA GAATAACAATGGCATTGATTTGAATAATCTTGTTCATAAAAACACTCATC ACACTTCTGCTGAAATTGATACTGTCCATACAGTAATTCATGAAGACGAA TCTGTTAATGAAAGTGAAGATGATTGTATGCATACAGAGCCTAAAACACC TGGTAAAAATTGCAAAATCAATAATTGTGATAAAACTGATGGAGTTACTG AAAATGGGGACATTTCCAATGAGGCTGAAATTGATGATGATGATGATGAT TTGAGAGCTTTCATTGATGTGGACACATTTGTTTTAGCAAACGAATGTCG TGTAGAGTTAAATGATTGTCTGCGTAATGAAAAGGACAAGACTGTTGATA ATGGTAGTGATAATTCAATTTGTGTCGATAAAAACGAAGAAAATATGGAA AGTTTCGTTGAGGACGAAAACGATGAAAATTTACTATCGAACCGAACCAT ATCCAGGATTAAAAAACATTTTACACATTTAGAAAAAGGAGGAGATGAAA TTTCTTTTCGGATTGTTTTGAAATCAAACTCGAGATTTTATTACAAAACT TGTGGCATTCAAAAAATCCATGAAAATCCACATCAATTGGATGAAATAAT GTTTTTCGAAGAAACATCATCGCAACCGAATATTCGTTTAATCACAGAAT TATACGCCCTAACGCAAAATCAATCACAACAATATCTCATAAACAAATAC CCAACAATATTATTCATTTCGCAGATTCAAACCGTAGATTGCATATTCTC ATTATTTCTACTGTACGTTCGAACGAATGTTGATTGCCAAATAGTTGGTA CAATACTCTGCAATAACAACAACAATCAAGCGAAAGTGTTGAAAGAAGCG TTGACCGAATTCAAAAAGATCAACAGTTTTTGGACACCCAAATATGTAGT GATTGATCCAAACCAAGTCATCCTTAACACTGCTGAAGAAGTATTTCCAG GTACAAGAATTGTTTTAATCCATTTTATAATGAATTTGTTTGCTTAACCC TTTCGGGAAAAGTTCTTTAGCCGTACAAACCTTCGCGAGCAGAAACTTCC GCGAATTTTGCGAATTTTGGCCCTTTTCGCGGAAGTAAATGTCTTTAGAA AGACTAATAAGTCAAAGGACAAATGTTTCAAGCCAATCCAAGAAGTATTT GTATTAAGTATTAAGCCATTTTTTCGTGTTTAAGTTCCNTTGTGAGTGAT TTCTGACTGGGTGACAATGTTCGGGCATAGCTTGCATTTACCACACGGTT TCGTGGTGTTTTGACGTGGTGGTCTTTCCAATATATCATTTCGCACGATT TTGTTGGCGATTGTTTTTCGGTNGAATAAAAACATACTGGTGTAAAATAT TTCGCTCTCTCTTAGAGCATCTTCAGTTTTTTTGAATAACAAAGACGTTT AACAATTATATTTAACGACGCTAGAACGGCATTAGAATGACTTCTTCAGT TTTTGACGTCACGGAACATCTGGTACACTTCTTTCGCGTACCCGTGGCAG TCTTTGTTGAGACCTGATGGAGCCAGAGTTTGGAGTCTGCACATCCATTT ATCTTCGGCTCGTTCTCTTTCTGCAGAGGATGAAAAGTCACTTTCTAGGA TCATCACCTCAAGGTCAGCAAANTTGGAAAGAGACCGAAAAATTCAGAGT TGGCAGAACATTTCCATCGCGACCACTCCTTTGCTGACCTTGAGGTGATG ATCCTAGAAAGTGACTTTTCATCCTCTGCAGAAAGAGAACGAGCCGAAGA TAAATGGATGTGCAGACTCCAAACTCTGGCACCATCAGGTCTCAACAAAG ACTGCCACGGGTACGCGAAAGAAGTGTACCAGATGTTCCGTGACGTCAAA AACTGAAGAAGTCATTGTAATGCCGTTCTAGCGTCGTTAAATATAATTGT TAAACGTCTTTGTTATTCAAAAAAACTGAAGATGCTCTAAAGGCCGGTCT CGACTTGCGCGCGCTGCAATCGCACTTTTTGGCTTCAATCCCTTTTGCTT GGAAAAAAGATTACGTCATAAAAATGTAGCGCGCGCACGAAAAAAAAGTT GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNCGCGCCAATGGAGTTGCTTCATTTTTCTTTT GACCAATAGCGTGGAAGCTTTTCTCGAAAAGTGCGATTGAAGCGCGCGCA AGTGGAGACCGGCCTTAAGAGAGAGCGAAATATTTTACACCAGTATGTTT TTATTCTGAGTTTTACTTCGTCCGCAATGCTGAATTGAAAGTTTATGCTC GCGAAAAAAGTATTCTGACAACAGACAAGCAGACCTCAAAATTACAATAT TAAATAAGGGTTCTTTTTTGCAATGCTCCTACACAAAATGTCCTAGGGGG GTCAGTATGACAACGTTTTAGTGGCGCTCATCTTTTTCAGAATTTTTCGT TATTGAAAAAACCTCCCAAAAATTCCCTAGTCTTTTTTTTCTTCGCGCTA TTCTCAACTTCAGTTCTCAACTTCAGTTGAGCTAGAATCTGAGAATGTCT GTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCACCAAAANN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTAAAACTTTGGGGCAG GCTGGAGACTTCAAAAATGGTCCGATTGGGCTGAAATTTTGCACACTTGA TCCTTGGGCAAATCCCTGGGGGTTTTTTTTTCATTTTTTGAAAATTTTCA TTTTTAAGGGCGTTGTCACGAGTTTTCGCCAAAACGAGGCTAAAACTTTG GGGCAGGCTGGAGACTTCAAAAATGATCGGGTTTGGCTGAAATTTGAAAC ACTTGTTCCTTGGGTGAATATCTGGGGGTATTTTTTTTATTTTTTGAAAA TTTTCATTTTTAAGGGCGTGGTCACGAGTTTTCGCCAAAACGAGGCTAAA ACTTTGGGGCAGGCTGGAGACTTCAAAAAAGGTCGGATTTGACTGAAATT TGGCACACTTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTTATTTTT TGAAAATTTTGATTTTTGGGGCCTGGGGACGAGGTTTTCACCAAAACGAG GCTGGCAGCCTGGACACTTCAAAAAAGGTCGGATTTGGCTGAAATTTGGC ACACTTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTTACTTTTTGAA AATTTTGATTTTTGGGGCCCGGGGACGAGGTTTTCACCAAAACGAGGCTG GCAGCCTGGACACTTCAGAAAAGGTCGGATTTGGCTGAAATTTGGCACCC TTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTTACTTTTTGAAAATT TTGATTTTTGGGGCCCGGGGACGAGGTTTTCACCAAAACGAGGCTGGCAG CCTGGACACTTCAGAAAAGGTCGGATTTGGCTGAAATTTGGCACCCTTGT TCCTTGGGTGAATATCTGGAGGTGTTTTTTTTACTTTTTGAAAATTTTGA TTTTTGGGGCCTGGGGACGAGGTTCAGCCAAAACGGACAAAGAATATTTG CTACCTAATACTAAATATTTGAAATGTTACAATTGGGCCTTCTAATAACG GGAAAATCTGAAGTTGAGCCCAGTGCGGTGCGCACGTTCGACTATCAAAA AAAGATCTAAAATATTTACCGAATTCGAAAAGTAATCACCTTAAAATAAA GAATAACTGAAATGCTAATGCTGTAATGCTTCATGTATTATTTTAATCGG ATTAAATTTCGCGAGATTAGATTAAATTTTGCGAGCGAAAAAAATCGCGA AATTTTCTGCATTTAATTTCGCGAGTCAGGAATCTCACACGTTTTCGCGA GTTTTGATTTCGCGAAAATGGCAAAAATTTATCATATTTTCGACTGATAT TCGTCGTCAATTTATTTTATAATTACTTTTATTTTCAGACTCAGAACTAT TCTTTGATCCCGAAATGTGTGTTTACAATTGGGAAAAGCATCTCTCAAAT CCATTGAATGGTCTAAGAGAGCATTCAGAGCAGTTATTTCATGACTTGAA AGCACTTCAAATGTGTTCAAAGAAAGGTCAATATCATGATTTGGTTCAAG AAATGAGGGATAAGAATATTTGTAATGATAGAAGCTTTCGAGAAGAATGG CTTATGAATGCGAAGGTAAGCTCATCCAAACTAACAGATATATTTTTCAA CTCGATTCGCTTATAGTGGTTCTCAAGATTTCTAATGCAATTTTTGCATC TTTTGGTTTTTTGCGACCCTGACATAAAGCATTACTACTAAAAAATATAA CCCCGAAAAGCTAGAACAGAATCTCCTTGATTTGAAGCCATTTCCTGAAC GGTCTTTTACACGAACACTAGTGGGTTAGTAAACAGTAGCGTGATGGGTC GACCAAAATTTGAGCAAACTGGGGTATTGGTAAACTGGTAAATTTCAAAA GTCCCCTATTAATATTTTGAAAATACGCGAACGAATAGGGCACGAAAATA TGTGGGTAAATTTTCTCTTTTTTTGCTGAAAACTGGCAATTCTAACGTAT AAAAAGCAAAGGGGCGCCGAAAGTGGTGAATTTAGAGGGAGGACTTTGCA GATCATCGGGGAAGAAAACAACCTTGTCAAACATACAGTAAAACCCATAA AAAATGTTCTGTAAAAATCCTTCAGCCAATCAAGGGAGGTGTGAAAAGGG CGAAAAGTAGACATGGAAAATTTAAATGTGATGCTTGATGATTTTATGAT TTTACTTTCAGAAATGGGTTTTCTTGCCAAATAATCTACAAAGTCTCCTC AGAGAAGATTGGATTGTTGAATGCAAAAAACTTTACGAGACGACACTCGA GAAACATTCGAACGAATTGGACATCTTTGATCTACTGCTCCATATTACTG ACATAATCCCAACGTCCAGATTCCAAAGGTATTAATTCTTCTTGAATTGT AGGAGTACCGGTATGTTACTAATTCTTGATATGCGTAAGACATTTTTCTA ACGGAAACGCCCGAAAAAAGCCGGGATTTGAGTAAGATTTATAAAGCCCG AAGGGCTAGATGTCGTGCTTTAAGCCATCGTAGGCAAANCGCCCGAAAAA AGCCGGGATTTGAGTAAGATTTATAAAGCCCGAAGGGCTAGATGTCGGGT TTAAAGCCATCGTAGGCAAAAAAAATGAATATTGGGAAAAATATTGTTGC TATTGTTTTCGAAAACCCGCGAAGCCTCTGATTGGTCAGATTGAATTTCT ATTGTAATGTCACGTGACCTAGGGGTAGGATTTCCTACCTAACCACGGCA CACTTTTCAGTAGAAGTACGACATCTAGTCCTTCGGGCTTTATAAATTTA TTGATTTGACTTCTAAAACATGGTTGTCAAAATCCGGCTGTTTTCGTAAA ACTCCCGTAAGAAAGTATGACGTCGCCTGGACTTGAAGAATGATGACCTT TCTGTAACTGCTTAAATAAAGTGTATCGCAAGGTCACAAACTAATACAAG AAAATAATACTGATGTCATGGTATTATGGTTGAACGAATTTCAAGAATTT TTGTTCATTTCTTAATTCAATTCCAGGAGAAAACCACCTTTTATCTAAAT CATCTTCGTTTTTTAGATACTGTCTCAAAAACAGGGAATTATACATCAAT GTACAAAACTCGTTCACGCGGAAGTCAATCCGTAAATTTGGTCTGCCTCT CTTTATGATATCTAACTGTGCAGCAATTCTGAGTAAATATAAAAACACAT CAACGCACACAACTGTTGTAAATATTAGCCATCGGACTTATGAAGTTGTT GATGGCGAGGAGATGTTCACAATCCACCTTGGTAACCAGAGAGAATTCCC ATCTTGCACATGCGCAGTATGGAAAACGTATTCTATACCTTGTAAACACA TTTTCCGTGTCTTGAAGAAATATTCACTGGATTATGACTCTTTGAGCCCT ATTTACAGGGCTAGCCCGTATTTCGATATTGATTTTTCATGTATGGAAAA GGTGAACAAAGATACGGCGAGATCGATGATCACATTCATTCCATCTAAAG AGGATATTTTGAAAAGCATAAGAAACCTTTGAATATTTTTTATCTTTCCC TTTTTTAACGTTTAGATATTTTTGAGGATTTCTTAGTGTACAACATTTTT TACCCTTTTTTGAATTTAGTTACCGTTTTTTAGATTTTTAAAAATATTTT TCATATTTTTTGAAACTATTTTTCATATTTTTCAAACTATTTTTCATATT TGTTGAGTTTCGCAGTTTTGTTTTGATTTTCATTTCATTCCATCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000762XLOC_000762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001498-exon-sc0000010-1575043694:807732..808831TCONS_00001498-exon-sc0000010-1575043694:807732..808831Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1575043694:803917..804143TCONS_00001498-exon-sc0000010-1575043694:803917..804143Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1575043694:803154..803320TCONS_00001498-exon-sc0000010-1575043694:803154..803320Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1575043694:801784..802465TCONS_00001498-exon-sc0000010-1575043694:801784..802465Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1510915933:807732..808831TCONS_00001498-exon-sc0000010-1510915933:807732..808831Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1510915933:803917..804143TCONS_00001498-exon-sc0000010-1510915933:803917..804143Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1510915933:803154..803320TCONS_00001498-exon-sc0000010-1510915933:803154..803320Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1510915933:801784..802465TCONS_00001498-exon-sc0000010-1510915933:801784..802465Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1491911889:807732..808831TCONS_00001498-exon-sc0000010-1491911889:807732..808831Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1491911889:803917..804143TCONS_00001498-exon-sc0000010-1491911889:803917..804143Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1491911889:803154..803320TCONS_00001498-exon-sc0000010-1491911889:803154..803320Clytia hemisphaericaexon
TCONS_00001498-exon-sc0000010-1491911889:801784..802465TCONS_00001498-exon-sc0000010-1491911889:801784..802465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:801784..808831 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.561641 0.499811 1.19471 0.9217 1.60493 1.23017 1.05761 1.22192 0.423257 0.565394 0 0.255199 0.165314 0.157594 0.146407 0.343084 0 0.414716 0 0 0.346267 0.333683 0.748412 0.963449 0.490971 0.19296 0 0 0.60418 0.246063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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