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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001498 ID=TCONS_00001498|Name=TCONS_00001498|organism=Clytia hemisphaerica|type=transcript|length=2176bp
AGAAAATGTTGAGCTTTTATTACCACTTGAAGCGGTTTTGACAATAAAAA
TGGAAACTAATCAACATGATACTAATCACATCGCTCTAATTAATGTTGAA
ATGAATTCAGAAAGTTTTGTACCGGAAAACCGAGAAAGCGTGGTAGATGA
GAATAACAATGGCATTGATTTGAATAATCTTGTTCATAAAAACACTCATC
ACACTTCTGCTGAAATTGATACTGTCCATACAGTAATTCATGAAGACGAA
TCTGTTAATGAAAGTGAAGATGATTGTATGCATACAGAGCCTAAAACACC
tggtaaaaattgcaaaatcaatAATTGTGATAAAACTGATGGAGTTACTG
AAAATGGGGACATTTCCAATGAGGctgaaattgatgatgatgatgatgat
ttgaGAGCTTTCATTGATGTGGACACATTTGTTTTAGCAAACGAATGTCG
TGTAGAGTTAAATGATTGTCTGCGTAATGAAAAGGACAAGACTGTTGATA
ATGGTAGTGATAATTCAATTTGTGTCGATAAAAACGAAGAAAATATGGAA
AGTTTCGTTGAGGACGAAAACGATGAAAATTTACTATCGAACCGAACCAT
ATCCAGgattaaaaaacattttacacATTTAGAAAAAGGAGGAGATGAAA
TTTCTTTTCggattgttttgaaatcaaactcgagattttattacaaaact
tgTGGCATTCAAAAAATCCATGAAAATCCACATCAATTGGATGAAATAAT
GTTTTTCGAAGAAACATCATCGCAACCGAATATTCGTTTAATCACAGAAT
TATACGCCCTAACGCAAAATCAATCACAACAATATCTCATAAACAAATAC
CCAACAATATTATTCATTTCGCAGATTCAAACCGTAGATTGCATATTCTC
ATTATTTCTACTGTACGTTCGAACGAATGTTGATTGCCAAATAGTTGGTA
CAATACTCTGCAATAACAACAACAATCAAGCGAAAGTGTTGAAAGAAGCG
TTGACCGAATTCAAAAAGATCAACAGTTTTTGGACACCCAAATATGTAGT
GATTGATCCAAACCAAGTCATCCTTAACACTGCTGAAGAAGTATTTCCAG
acTCAGAACTATTCTTTGATCCCGAAATGTGTGTTTACAATTGGGAAAAG
CATCTCTCAAATCCATTGAATGGTCTAAGAGAGCATTCAGAGCAGTTATT
TCATGACTTGAAAGCACTTCAAATGTGTTCAAAGAAAGGTCAATATCATG
ATTTGGTTCAAGAAATGAGGGATAAGAATATTTGTAATGATAGAAGCTTT
CGAGAAGAATGGCTTATGAATGCGAAGAAATGGGTTTTCTTGCCAAATAA
TCTACAAAGTCTCCTCAGAGAAGATTGGATTGTTGAATGCAAAAAACTTT
ACGAGACGACACTCGAGAAACATTCGAACGAATTGGACATCTTTGATCTA
CTGCTCCATATTACTGACATAATCCCAACGTCCAGATTCCAAAGATACTG
TCTCAAAAACAGGGAATTATACATCAATGTACAAAACTCGTTCACGCGGA
AGTCAATCCGTAAATTTGGTCTGCCTCTCTTTATGATATCTAACTGTGCA
GCAATTCTGAGTAAATATAAAAACACATCAACGCACACAACTGTTGTAAA
TATTAGCCATCGGACTTATGAAGTTGTTGATGGCGAGGAGATGTTCACAA
TCCACCTTGGTAACCAGAGAGAATTCCCATCTTGCACATGCGCAGTATGG
AAAACGTATTCTATACCTTGTAAACACATTTTCCGTGTCTTGAAGAAATA
TTCACTGGATTATGACTCTTTGAGCCCTATTTACAGGGCTAGCCCGTATT
TCgatattgatttttcatgtatggaAAAGGTGAACAAAGATACGGCGAGA
TCGATGATCACATTCATTCCATCTAaagaggatattttgaaaagcaTAAG
AAacctttgaatattttttatctttcccttttttAACGTTTAGATATTTT
TGAGGATTTCTTAGTGTACAacattttttacccttttttgaatttagtta
ccgttttttagatttttaaaaatatttttcatattttttgaaactatttt
tcatatttttcaaactatttttcatatttgttgAGTTTCgcagttttgtt
ttgattttcatttcattccatCCTTT Run BLAST on NCBI transcript from alignment at sc0000010:801784..808831- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001498 ID=TCONS_00001498|Name=TCONS_00001498|organism=Clytia hemisphaerica|type=transcript|length=7048bp|location=Sequence derived from alignment at sc0000010:801784..808831- (Clytia hemisphaerica)
AGAAAATGTTGAGCTTTTATTACCACTTGAAGCGGTTTTGACAATAAAAA
TGGAAACTAATCAACATGATACTAATCACATCGCTCTAATTAATGTTGAA
ATGAATTCAGAAAGTTTTGTACCGGAAAACCGAGAAAGCGTGGTAGATGA
GAATAACAATGGCATTGATTTGAATAATCTTGTTCATAAAAACACTCATC
ACACTTCTGCTGAAATTGATACTGTCCATACAGTAATTCATGAAGACGAA
TCTGTTAATGAAAGTGAAGATGATTGTATGCATACAGAGCCTAAAACACC
TGGTAAAAATTGCAAAATCAATAATTGTGATAAAACTGATGGAGTTACTG
AAAATGGGGACATTTCCAATGAGGCTGAAATTGATGATGATGATGATGAT
TTGAGAGCTTTCATTGATGTGGACACATTTGTTTTAGCAAACGAATGTCG
TGTAGAGTTAAATGATTGTCTGCGTAATGAAAAGGACAAGACTGTTGATA
ATGGTAGTGATAATTCAATTTGTGTCGATAAAAACGAAGAAAATATGGAA
AGTTTCGTTGAGGACGAAAACGATGAAAATTTACTATCGAACCGAACCAT
ATCCAGGATTAAAAAACATTTTACACATTTAGAAAAAGGAGGAGATGAAA
TTTCTTTTCGGATTGTTTTGAAATCAAACTCGAGATTTTATTACAAAACT
TGTGGCATTCAAAAAATCCATGAAAATCCACATCAATTGGATGAAATAAT
GTTTTTCGAAGAAACATCATCGCAACCGAATATTCGTTTAATCACAGAAT
TATACGCCCTAACGCAAAATCAATCACAACAATATCTCATAAACAAATAC
CCAACAATATTATTCATTTCGCAGATTCAAACCGTAGATTGCATATTCTC
ATTATTTCTACTGTACGTTCGAACGAATGTTGATTGCCAAATAGTTGGTA
CAATACTCTGCAATAACAACAACAATCAAGCGAAAGTGTTGAAAGAAGCG
TTGACCGAATTCAAAAAGATCAACAGTTTTTGGACACCCAAATATGTAGT
GATTGATCCAAACCAAGTCATCCTTAACACTGCTGAAGAAGTATTTCCAG
GTACAAGAATTGTTTTAATCCATTTTATAATGAATTTGTTTGCTTAACCC
TTTCGGGAAAAGTTCTTTAGCCGTACAAACCTTCGCGAGCAGAAACTTCC
GCGAATTTTGCGAATTTTGGCCCTTTTCGCGGAAGTAAATGTCTTTAGAA
AGACTAATAAGTCAAAGGACAAATGTTTCAAGCCAATCCAAGAAGTATTT
GTATTAAGTATTAAGCCATTTTTTCGTGTTTAAGTTCCNTTGTGAGTGAT
TTCTGACTGGGTGACAATGTTCGGGCATAGCTTGCATTTACCACACGGTT
TCGTGGTGTTTTGACGTGGTGGTCTTTCCAATATATCATTTCGCACGATT
TTGTTGGCGATTGTTTTTCGGTNGAATAAAAACATACTGGTGTAAAATAT
TTCGCTCTCTCTTAGAGCATCTTCAGTTTTTTTGAATAACAAAGACGTTT
AACAATTATATTTAACGACGCTAGAACGGCATTAGAATGACTTCTTCAGT
TTTTGACGTCACGGAACATCTGGTACACTTCTTTCGCGTACCCGTGGCAG
TCTTTGTTGAGACCTGATGGAGCCAGAGTTTGGAGTCTGCACATCCATTT
ATCTTCGGCTCGTTCTCTTTCTGCAGAGGATGAAAAGTCACTTTCTAGGA
TCATCACCTCAAGGTCAGCAAANTTGGAAAGAGACCGAAAAATTCAGAGT
TGGCAGAACATTTCCATCGCGACCACTCCTTTGCTGACCTTGAGGTGATG
ATCCTAGAAAGTGACTTTTCATCCTCTGCAGAAAGAGAACGAGCCGAAGA
TAAATGGATGTGCAGACTCCAAACTCTGGCACCATCAGGTCTCAACAAAG
ACTGCCACGGGTACGCGAAAGAAGTGTACCAGATGTTCCGTGACGTCAAA
AACTGAAGAAGTCATTGTAATGCCGTTCTAGCGTCGTTAAATATAATTGT
TAAACGTCTTTGTTATTCAAAAAAACTGAAGATGCTCTAAAGGCCGGTCT
CGACTTGCGCGCGCTGCAATCGCACTTTTTGGCTTCAATCCCTTTTGCTT
GGAAAAAAGATTACGTCATAAAAATGTAGCGCGCGCACGAAAAAAAAGTT
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCGCGCCAATGGAGTTGCTTCATTTTTCTTTT
GACCAATAGCGTGGAAGCTTTTCTCGAAAAGTGCGATTGAAGCGCGCGCA
AGTGGAGACCGGCCTTAAGAGAGAGCGAAATATTTTACACCAGTATGTTT
TTATTCTGAGTTTTACTTCGTCCGCAATGCTGAATTGAAAGTTTATGCTC
GCGAAAAAAGTATTCTGACAACAGACAAGCAGACCTCAAAATTACAATAT
TAAATAAGGGTTCTTTTTTGCAATGCTCCTACACAAAATGTCCTAGGGGG
GTCAGTATGACAACGTTTTAGTGGCGCTCATCTTTTTCAGAATTTTTCGT
TATTGAAAAAACCTCCCAAAAATTCCCTAGTCTTTTTTTTCTTCGCGCTA
TTCTCAACTTCAGTTCTCAACTTCAGTTGAGCTAGAATCTGAGAATGTCT
GTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCACCAAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTAAAACTTTGGGGCAG
GCTGGAGACTTCAAAAATGGTCCGATTGGGCTGAAATTTTGCACACTTGA
TCCTTGGGCAAATCCCTGGGGGTTTTTTTTTCATTTTTTGAAAATTTTCA
TTTTTAAGGGCGTTGTCACGAGTTTTCGCCAAAACGAGGCTAAAACTTTG
GGGCAGGCTGGAGACTTCAAAAATGATCGGGTTTGGCTGAAATTTGAAAC
ACTTGTTCCTTGGGTGAATATCTGGGGGTATTTTTTTTATTTTTTGAAAA
TTTTCATTTTTAAGGGCGTGGTCACGAGTTTTCGCCAAAACGAGGCTAAA
ACTTTGGGGCAGGCTGGAGACTTCAAAAAAGGTCGGATTTGACTGAAATT
TGGCACACTTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTTATTTTT
TGAAAATTTTGATTTTTGGGGCCTGGGGACGAGGTTTTCACCAAAACGAG
GCTGGCAGCCTGGACACTTCAAAAAAGGTCGGATTTGGCTGAAATTTGGC
ACACTTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTTACTTTTTGAA
AATTTTGATTTTTGGGGCCCGGGGACGAGGTTTTCACCAAAACGAGGCTG
GCAGCCTGGACACTTCAGAAAAGGTCGGATTTGGCTGAAATTTGGCACCC
TTGTTCCTTGGGTGAATATCTGGAGGTGTTTTTTTTACTTTTTGAAAATT
TTGATTTTTGGGGCCCGGGGACGAGGTTTTCACCAAAACGAGGCTGGCAG
CCTGGACACTTCAGAAAAGGTCGGATTTGGCTGAAATTTGGCACCCTTGT
TCCTTGGGTGAATATCTGGAGGTGTTTTTTTTACTTTTTGAAAATTTTGA
TTTTTGGGGCCTGGGGACGAGGTTCAGCCAAAACGGACAAAGAATATTTG
CTACCTAATACTAAATATTTGAAATGTTACAATTGGGCCTTCTAATAACG
GGAAAATCTGAAGTTGAGCCCAGTGCGGTGCGCACGTTCGACTATCAAAA
AAAGATCTAAAATATTTACCGAATTCGAAAAGTAATCACCTTAAAATAAA
GAATAACTGAAATGCTAATGCTGTAATGCTTCATGTATTATTTTAATCGG
ATTAAATTTCGCGAGATTAGATTAAATTTTGCGAGCGAAAAAAATCGCGA
AATTTTCTGCATTTAATTTCGCGAGTCAGGAATCTCACACGTTTTCGCGA
GTTTTGATTTCGCGAAAATGGCAAAAATTTATCATATTTTCGACTGATAT
TCGTCGTCAATTTATTTTATAATTACTTTTATTTTCAGACTCAGAACTAT
TCTTTGATCCCGAAATGTGTGTTTACAATTGGGAAAAGCATCTCTCAAAT
CCATTGAATGGTCTAAGAGAGCATTCAGAGCAGTTATTTCATGACTTGAA
AGCACTTCAAATGTGTTCAAAGAAAGGTCAATATCATGATTTGGTTCAAG
AAATGAGGGATAAGAATATTTGTAATGATAGAAGCTTTCGAGAAGAATGG
CTTATGAATGCGAAGGTAAGCTCATCCAAACTAACAGATATATTTTTCAA
CTCGATTCGCTTATAGTGGTTCTCAAGATTTCTAATGCAATTTTTGCATC
TTTTGGTTTTTTGCGACCCTGACATAAAGCATTACTACTAAAAAATATAA
CCCCGAAAAGCTAGAACAGAATCTCCTTGATTTGAAGCCATTTCCTGAAC
GGTCTTTTACACGAACACTAGTGGGTTAGTAAACAGTAGCGTGATGGGTC
GACCAAAATTTGAGCAAACTGGGGTATTGGTAAACTGGTAAATTTCAAAA
GTCCCCTATTAATATTTTGAAAATACGCGAACGAATAGGGCACGAAAATA
TGTGGGTAAATTTTCTCTTTTTTTGCTGAAAACTGGCAATTCTAACGTAT
AAAAAGCAAAGGGGCGCCGAAAGTGGTGAATTTAGAGGGAGGACTTTGCA
GATCATCGGGGAAGAAAACAACCTTGTCAAACATACAGTAAAACCCATAA
AAAATGTTCTGTAAAAATCCTTCAGCCAATCAAGGGAGGTGTGAAAAGGG
CGAAAAGTAGACATGGAAAATTTAAATGTGATGCTTGATGATTTTATGAT
TTTACTTTCAGAAATGGGTTTTCTTGCCAAATAATCTACAAAGTCTCCTC
AGAGAAGATTGGATTGTTGAATGCAAAAAACTTTACGAGACGACACTCGA
GAAACATTCGAACGAATTGGACATCTTTGATCTACTGCTCCATATTACTG
ACATAATCCCAACGTCCAGATTCCAAAGGTATTAATTCTTCTTGAATTGT
AGGAGTACCGGTATGTTACTAATTCTTGATATGCGTAAGACATTTTTCTA
ACGGAAACGCCCGAAAAAAGCCGGGATTTGAGTAAGATTTATAAAGCCCG
AAGGGCTAGATGTCGTGCTTTAAGCCATCGTAGGCAAANCGCCCGAAAAA
AGCCGGGATTTGAGTAAGATTTATAAAGCCCGAAGGGCTAGATGTCGGGT
TTAAAGCCATCGTAGGCAAAAAAAATGAATATTGGGAAAAATATTGTTGC
TATTGTTTTCGAAAACCCGCGAAGCCTCTGATTGGTCAGATTGAATTTCT
ATTGTAATGTCACGTGACCTAGGGGTAGGATTTCCTACCTAACCACGGCA
CACTTTTCAGTAGAAGTACGACATCTAGTCCTTCGGGCTTTATAAATTTA
TTGATTTGACTTCTAAAACATGGTTGTCAAAATCCGGCTGTTTTCGTAAA
ACTCCCGTAAGAAAGTATGACGTCGCCTGGACTTGAAGAATGATGACCTT
TCTGTAACTGCTTAAATAAAGTGTATCGCAAGGTCACAAACTAATACAAG
AAAATAATACTGATGTCATGGTATTATGGTTGAACGAATTTCAAGAATTT
TTGTTCATTTCTTAATTCAATTCCAGGAGAAAACCACCTTTTATCTAAAT
CATCTTCGTTTTTTAGATACTGTCTCAAAAACAGGGAATTATACATCAAT
GTACAAAACTCGTTCACGCGGAAGTCAATCCGTAAATTTGGTCTGCCTCT
CTTTATGATATCTAACTGTGCAGCAATTCTGAGTAAATATAAAAACACAT
CAACGCACACAACTGTTGTAAATATTAGCCATCGGACTTATGAAGTTGTT
GATGGCGAGGAGATGTTCACAATCCACCTTGGTAACCAGAGAGAATTCCC
ATCTTGCACATGCGCAGTATGGAAAACGTATTCTATACCTTGTAAACACA
TTTTCCGTGTCTTGAAGAAATATTCACTGGATTATGACTCTTTGAGCCCT
ATTTACAGGGCTAGCCCGTATTTCGATATTGATTTTTCATGTATGGAAAA
GGTGAACAAAGATACGGCGAGATCGATGATCACATTCATTCCATCTAAAG
AGGATATTTTGAAAAGCATAAGAAACCTTTGAATATTTTTTATCTTTCCC
TTTTTTAACGTTTAGATATTTTTGAGGATTTCTTAGTGTACAACATTTTT
TACCCTTTTTTGAATTTAGTTACCGTTTTTTAGATTTTTAAAAATATTTT
TCATATTTTTTGAAACTATTTTTCATATTTTTCAAACTATTTTTCATATT
TGTTGAGTTTCGCAGTTTTGTTTTGATTTTCATTTCATTCCATCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001498-exon-sc0000010-1575043694:807732..808831 | TCONS_00001498-exon-sc0000010-1575043694:807732..808831 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1575043694:803917..804143 | TCONS_00001498-exon-sc0000010-1575043694:803917..804143 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1575043694:803154..803320 | TCONS_00001498-exon-sc0000010-1575043694:803154..803320 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1575043694:801784..802465 | TCONS_00001498-exon-sc0000010-1575043694:801784..802465 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1510915933:807732..808831 | TCONS_00001498-exon-sc0000010-1510915933:807732..808831 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1510915933:803917..804143 | TCONS_00001498-exon-sc0000010-1510915933:803917..804143 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1510915933:803154..803320 | TCONS_00001498-exon-sc0000010-1510915933:803154..803320 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1510915933:801784..802465 | TCONS_00001498-exon-sc0000010-1510915933:801784..802465 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1491911889:807732..808831 | TCONS_00001498-exon-sc0000010-1491911889:807732..808831 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1491911889:803917..804143 | TCONS_00001498-exon-sc0000010-1491911889:803917..804143 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1491911889:803154..803320 | TCONS_00001498-exon-sc0000010-1491911889:803154..803320 | Clytia hemisphaerica | exon |
| TCONS_00001498-exon-sc0000010-1491911889:801784..802465 | TCONS_00001498-exon-sc0000010-1491911889:801784..802465 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:801784..808831 - |
Blast
The following BLAST results are available for this feature:
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