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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001396 ID=TCONS_00001396|Name=TCONS_00001396|organism=Clytia hemisphaerica|type=transcript|length=1724bpRun BLAST on NCBI protein sequence of TCONS_00001396-protein >TCONS_00001396-protein ID=TCONS_00001396-protein|Name=TCONS_00001396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp FFQNDDFMLSASRDKSVRLWNIHQKKNLVAYKGHAYTVWDVSVNTDGTYFRun BLAST on NCBI transcript from alignment at sc0000010:1031572..1040591+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001396 ID=TCONS_00001396|Name=TCONS_00001396|organism=Clytia hemisphaerica|type=transcript|length=9020bp|location=Sequence derived from alignment at sc0000010:1031572..1040591+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000010:1031572..1040591+ >TCONS_00001396 ID=TCONS_00001396|Name=TCONS_00001396|organism=Clytia hemisphaerica|type=CDS|length=3975bp|location=Sequence derived from alignment at sc0000010:1031572..1040591+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001396 vs. Swiss-Prot (Human)
Match: TAF5L (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 6.434e-64 Identity = 106/231 (45.89%), Postives = 146/231 (63.20%), Query Frame = 2
Query: 2 FFQNDDFMLSASRDKSVRLWNIHQKKNLVAYKGHAYTVWDVSVNTDGTYFVSASLDKTLRLWNTEYACPLRILAGHGDSVDCVAFHPNGNYIASGSSDKTCRLWDLQSGQFVRVFVGHKGPIYSLAFSPDGKYLTSAGDDSEIKIWDLANGQLLNEFKAHSKTIYNLSFSNDGSMFASGGLDKTVKVWESENIFRKKTTSLFKMADECIGSYPVDNISSILDLKFSDGNLL 694
F + +LS S D S+R W++ N V Y+GHAY VWD+ ++ YF S S D+T RLW+ + PLRI AGH VDCV FHPN NY+A+GS+DKT RLW Q G VR+F GH+GP+ SLAFSP+GKYL SAG+D +K+WDLA+G L E + H+ I +L+FS D + AS +D +V+VW+ N + + E +G Y +S++L ++F NLL
Sbjct: 350 FLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNTYCSAPAD--GSSSELVGVY-TGQMSNVLSVQFMACNLL 577 The following BLAST results are available for this feature:
BLAST of TCONS_00001396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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