TCONS_00001358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001358
Unique NameTCONS_00001358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001358 ID=TCONS_00001358|Name=TCONS_00001358|organism=Clytia hemisphaerica|type=transcript|length=1607bp
CGAGGGAGACAATTTAAAACTTGCATCATTCAACGAAAACGGCAAATAAG
TTTTCAAGAGAAACTGTTGTTAGAAGCTGAGCTGTATAACCAAGTTGAAC
TATGCCTCAAAGAAGGACTGCTGTCTTCCCCGTAAACGGTCAAGGGACTC
TAGTCTATACCGTTCGTAAAAAGAGTCAATTCACCATCTACATAACACCT
GACAAACAAAAGGTACCAAAAAGCTTGGATTTTGATAGTGAATTCTCAGA
GTTTGAAGAGGAGCAAAGTTTTGATACGGAGAACTACATCTCGTTGACTG
TTGGTGAGAATTTTGCACGTTTCAAACTGAAGATGCATAAAGATGATGAA
GAGAGAGTGTTGAAAGAAGAATATGGGAAAAATATTGGAATTGAACCTAA
AGAACTGGTCACTTATTGGTTTAGTTACGACCGCGATGCACTGACCTTGA
AATACGGCAAAGGGCACGTTATGACTCAAACAACACTGTTAGAATTCCCT
TTCTTGGAAGGCAAATCGAAAGGCGAAGAAGAACACATCCGAAAGAAGTA
CAATATTTTCTTCAACGCAGaAGAGAAAAAATACGTGGTTGCCGAATCGG
AGAAAATGGTGGAGGACGTGACAGGAGGACTGGTCAAAATCGAACAGACG
TTACAATTCTATCCCAACCCTCTCGTGACTAATTTCTCACCTATCGTTAA
AGATAGCTCGAAAGTCACTTTGTTCGATCTTGATCGAGATCAATTCATGT
TTTCAAGTAGCCTACCACCTGCCTGTAAAGAACTCTACGATAATATCAAA
GGTCTTCAACTGGAGTTTCCAGAAGATCCTATTACGAAACTTTCAGACGC
CATACGGTACAGCATCAACACACCTGGAATGACTTTAtatgaaaagttga
aagaaaaggaagaacAGTTTGCTTACCTACGTGTAACACTTGGGCCTGAC
CGCCGTACCGCACCTGGTATTCCCTATGTTCTAGAGATCTGGCCTTCAGG
AAAAGGAAGCCCTATCCATAATCATGGAGGAGCATGTGCAATAATTAAAG
TGCTATTTGGTAGAATCACTTGCAACATCTACAACAAGATCACACAGCCA
CCGGAACAAACAGAAATGCAACCTTTGACCAGATTTGATCTCAATGAAGA
GCAAATGACCTGGATAGGCCCCAACTGGTATCAAACGCATCGCTTACACA
ACAACACTGATGATTTCTGCGCAACCATACAATGCTATCGATATGACTTC
AATGATGCAATTCACTGGCCCAATTTCGATTATGTGGGTTTTGTAGAAGA
CAAAGAAAAATACGAGTTGGAAGAATTCTATCCAGATAGCGATTTCACGT
TCGTTAATTTGAGACGAACTGTTCTTGACGAGtttcaaaaattcttagaa
GGATGAGTTATGATTTTAACTTTCCTGCAAAGATTGCAGTGCTTTcaagt
aaataaatattttgttagCGTTTTTTTTTCACAGTAAACAGTAAACCATG
TTACATTTTAAAACGTTATACTGTTGAACCCCCATGTAATTTGTATTTAA
TAAATTGAAAGACCTATGTGTGAATCGAAAAAAAACTTGATAATTTCaca
attaaaa
Run BLAST on NCBI

transcript from alignment at sc0000010:596149..604106+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001358 ID=TCONS_00001358|Name=TCONS_00001358|organism=Clytia hemisphaerica|type=transcript|length=7958bp|location=Sequence derived from alignment at sc0000010:596149..604106+ (Clytia hemisphaerica)
CGAGGGAGACAATTTAAAACTTGCATCATTCAACGAAAACGGCAAATAAG
TTTTCAAGAGAAACTGTTGTTAGAAGCTGAGCTGTATAACCAAGTTGAAC
TATGCCTCAAAGAAGGACTGCTGTCTTCCCCGTAAACGGTCAAGGGACTC
TAGTCTATACCGTTCGTAAAAAGAGTCAATTCACCATCTACATAACACCT
GACAAACAAAAGGTACCAAAAAGCTTGGATTTTGATAGTGAATTCTCAGA
GTTTGAAGAGGAGCAAAGTTTTGATACGGAGAACTACATCTCGTTGACTG
TTGGTGAGAATTTTGCACGTTTCAAACTGAAGATGCATAAAGATGATGAA
GAGAGAGTGTTGAAAGAAGAATATGGGAAAAATATTGGAATTGAACCTAA
AGAACTGGTAAGCTGTACCAATCACATCGTTTTTTCTCGTACTTTTATTA
ACTTTTAACTAATTCAATTTGTAATTCCGTTGCGAAATATTCTTTTAAAT
TACAAGTCTGTATGTAACATAGTTTTTGGATACCCTACTTTCTAAGATTC
CAGCAACGAACATCCCTTTCGAttgtaaaattttcatttttatcaaccCT
GATGGACCTTTTTGGACCTCTCCAAGGAGACCTAAAAGTAGCCATTATAG
AGTACAAACTTTACGATTTGTCTAAGCCATATAAGTACACCTGCCAATAA
TGCTGGGTCATTCATTCTGACTGACTTTTAAAATTACTGATTCAGGGCTG
ACTCTTTTTCCCAGAGCTATTATGTTGGATCAAATTTATACTTCAgttac
ttttttttctttcttacaagTATTGCTTAAAAGCAATCGATTTTCTTTAC
AATCAGATCTCATTTTTGGTTGCAGGTCACTTATTGGTTTAGTTACGACC
GCGATGCACTGACCTTGAAATACGGCAAAGGGCACGTTATGACTCAAACA
ACACTGTTAGAATTCCCTTTCTTGGAAGGCAAATCGAAAGGCGAAGAAGA
ACACATCCGAAAGAAGTACAATATTTTCTTCAACGCAGGTTAGATTTCGA
ACTCACCAATAATATTATCAATCAACTTTTGTCTACTTtgttaaaaagtt
tattttaagTCTGTCCGTCTGTCTACCTGTATGTCTGTATGCCCGAGAAA
acctttgactttttttttacaaatcgACACTGAGTTCGAAttattgattt
tgtattttaatttttcttgaaGAGAGAAAATACGTGGTTACCGAATCAGA
GAAAATAATGGAGGACGTGACAGGAGGACTGGTCAAAATCGAACAGACGT
TACAATTCTATTCCAACCCTCTCGTGACTAATTTCTCACCTATCGTTAAA
GATAGTTCGAAAGTCACTTTGCTTGATCTTGATCGAGATCAATTCATGTT
TTCCAGTAGTCTACCACCTGCCTGTAAAGAACTCTACGATAATATTAAAG
GTATATCTAGTTGACTTCCAATGTCTAATTTTTTGTGGTCTTTAGTTTCC
TAATAAATAATACCATACCAGAACCCATAGTATAATTAATGTATATCGTG
CTGCTCATGCTCTGTCTTTATCAAACTGCAATCACCGCATGTCAAATCTT
GTTGTCGAATATGTCGTTTGCTCTTCTCTCGTTTTAAAGGCCagagtaag
taagtaagtctaaGACCGCAGTCAGAAGTCTGAAGGCTTCTTTCGACAGC
TATTACCCAAAGGTAAAAAGGGTGGGCGCCAATTTTTACTCCCTGGACTG
CTGCACTtatccttgatccttctcttaattgctgagcatcaaacaaagaa
gcatcaagtaccattttgggaatctttggtattaCCCGCTTGGGGTGGAA
CCCACAACCtagcgaaccgtagccggaagctctaccactgcactacggtc
gctgaaGGCCATAGgtataaatactttttggaaattaGAAATCATTGTCT
TCTGCAGGTCTCCAACTGGAGTTTCCAGAAGATCCTATTACGAAACTTTC
AGACGCCATACGGTACAGCATCAACACACCTGGAATGACTTTAtacgaaa
agttgaaagaaaaggaagaacAGTTTGCTTACCTACGTGTAACACTCGGT
CCTGACCGCCGNAGCCGGaagctctaccactgcactacggtcgctgaaGG
CCATAGgtataaatactttttggaaatttgaaatcatTATCGTCTACCGC
GCCTGGTATTCCCTATGTTCTAGAGATCTGGCCTTCAGGTAAGGAGATGG
TTCAGTGCAGCTCGCTTTGGCAAGTTAACCGTAGTGGTAGTAACATGTTT
TCAATATTTAAGAGGGAGATCATGAATCGCATTACTCGTTGATGTGTCTT
GATGTATACCGGATGGTCCAAAGAAAGTTTccataaattcaaaatttatg
attttcatCACAAAGTGTTAGAACAACTATCCACCGCACAAACAGATAGG
GTTGATTCTACCAGCGTCGATGAAtatcaatttctgaaaattttccgATA
GAGTGACTTCAGACATCGGTGGTCTCTCGCCCCTGGGAAACTATAACTAT
ACTATAAAAGTAACTTAATTCNACTTTTTCAGATTATACGCTCAtatgtt
ttcttcttttatattaCTAACTGCGAAATAAATTAGCATGGTCAGGGGAT
TGTCCAGGGTTGATGAATCTATATTTGCTTTCTTTCTCAGGAAAAGGAAG
CCCTATCCATAATCATGGAGGAGCATGCGCTATCATTAAAGTGCTATTTG
GTAGAATCACTTGCAACATCTACAACAAGATCACACAGCCACCAGAACAA
ACAGAAATGCAACCTTTGACCAGATTTGATCTCAATGAAGAGCAAATGAC
CTGGATAGGCCCCAACTGGTATCAAACGCATCGCTTACACAATAACACTG
ATGATTTCTGCGCAACCATACAATGCTATCGATATGACTTCAATGATGCA
ATTCGCTGCCCAAATTTCCATTATGTGGGTTTTGTAGAAGGCAAAGAAAA
ATATGAGTTGGAAGAATTCTATCCAGATAGCGATTTCACGTTCGTTAATT
TGAGACGAACTGTTCTTGACGAGTATCAAAAATTCTTGGAAGGCTGAGTa
gtgattttgattttattttttttctgtaaaagtgttgtttttaatcaaat
tttatttaGCCCTCTTAGCCGAGGGTAATCTAAAAGATATTTTAGAGCTT
CTACagtttaaccctatttttatcagtgGGGGTGTTTTCCATCAGCCTGG
CATTTATTTGCTAATAGCTTTGTATTTGTCTGATACTTTCGTACACAAGT
CGTTTCTTTTGTCAGTAATGAGTTGTGGTAGCGAACCCCAAATGAACTTT
CTGGTGCGAACCCTGAAACAAGATTTTGACAAGATAGTCTACCTGCAGGC
TTTTATTGGCACGGCCAGTAAAAGAGTCGCGGTATTTCAGCACGGTAAAA
TAAAAAGACGCAATTGTTAAAGAGTTAACGACTTAAAAGTATCAAAGAGT
TGGACAATAAAAGGCTAtttcatatttaaaaaaaaatcaaatttgtttaa
TACCGATTTAGTTGTATGAAAAGAGATTCTCGAAAAACATTATCAGTGAT
TCGACAAAACATACTTTCACCGAAGTTTCTTTTAAGATAATCCTATAGAG
TCTGTGTAAAACATGATAAGGCAAGTGGGTAAAACGATATGAACCTTTTG
TCGGGAGATGATGATTCGTATGACAATCTCGTAATTAGGAACTTATAGTA
TTTTTATAGACTTAAAAAAGCTTTGTTAGTTCTATGTTGTTTTAATGATC
TTTGATGTTTAGTAAattcaaacaaacaaacgaAAATACTAGTAAGGAAA
TAATTCTCGTTCCAACACaatcttacacgtttttttataagaacaaacta
tataagaacataaggcttcgatgaccaaaatgttaagaataagttaagaa
cattttaaggcttcgcggactcaaAAACAGCCAATtacttaggaaaatgg
acaaaaatacataaaaattgggggaaaataagaacatgttaaggacattt
tgaaactcaaaaagttaagaacatctgaaggcttcaaaaaatttggatgt
tcttataaaaaaacgtgtatctgtttgaaagaaaattagtttaCTGGTAA
TAGACAAGCTCCTCTTCTTTCCTAGAAAGGTGTTTTACATTCTGcgaaaa
aaaaaacctaaaaGTTTTTGCTGACTCAAACAGTGATTTGAATCTGTGAC
TATCTTGTGACTATCAGCCTCTTTCCAATCCTTTATATAAAGCCGCCATA
ATGTGTACgaatcttcaaaactactttactTGTAAACCGCGAGGGAGACA
ATTTAAAACGTGCATCATTCAACGAAAACGGCAACTAAGTTTTCAAGAGA
AACTGTTGTTAGAAGCTGAGCTGTTTAAACCAAGGTGAGCTATGCCTCGA
AGAAGGACTGCTGTCTTTCCCGTAAACGGTCAAGGGACTCTAGTCTATAC
CGTTCGTAAGAAGAGTCAATTCACCATCTACATAACACCTGACAAACAAA
AGGTACCAAAAAGCTTAGATTTCGATAGTGAATTCTCAGAGTTTGAAGAG
GAGCAAAGTTTTGATACGGAGAACTACATCTCGTTGACTGTTGGTGAGAA
TTTTGCACGTTTCAAACTGAAGATGCATAAAGATGGTGAAGAGAGAGTGT
TGAAAGAAGAATATGGGAAGAATATTGGAATTGAACCCAAAGAACTGGTA
AGCTGTACTAATCACATCGTCTTATCTTTCGTCTAGACTTTCTCAGTCTG
GTTACGTTACGTAGTTGTACTTCTATTGTTTTTACAGCTATATATCCTGT
CCTATACGTAGCGTTCTTAAAGCTCGTGATTTTTCTTTAACGTTGGAATT
TGTTTTTGGTTTTAGGTCAGTTATTGGTTCAGTTATGACCGCGATGCACT
GACCTTGAAATACGGCAAAGGGCACGTTATGACTCAAACAACACTATTAG
AGTTCCCTTTCTTGGAAGGCAAATCGAAAGGCGAAGAAGAGCACATTCGA
AAGAAGTACAATATTTTCTTCAATGCAGGTTAGACTTTGAAGTCGCTAAT
ATTCTCAATcgacttttgttttttttccctTGGTTATCAACTTCAACTAA
GTTTGGGTATaaatctgtctgtctgtctgtctgtctgtctgtctgtctgt
ctgtctgtctgtctgtctgtctgtctgtcttaCAATATTGTCACCGGATT
TGTCGTTTTATTGGATTTCTCTCATATAATGTGTATGTCGGATGGAAATG
GTTATTTAGGTGTGTGACATTGGGTTGATGGATGTTTACTAATTGGCAGT
TTTTACACTAGGCTTGGATAGTGTTagttttttcttttggaaaggtgGGT
TTTGGCTTTTATCAACAGTTCTGTATTGTTTTCTTCGTGTCTCTCTGTCT
GTCTGTCCGTCCGAAGATTTATGGGTTGACCAATTTTCTTACCATTTGAG
GCTAGGTTCGAATTattaattttatatttatttttctagaAGAGAAAAAA
TACGTGGTTGCCGAATCGGAGAAAATGGTGGAGGACGTGACAGGAGGACT
GGTCAAAATCGAACAGACGTTACAATTCTATCCCAACCCTCTCGTGACTA
ATTTCTCACCTATCGTTAAAGATAGCTCGAAAGTCACTTTGTTCGATCTT
GATCGAGATCAATTCATGTTTTCAAGTAGCCTACCACCTGCCTGTAAAGA
ACTCTACGATAATATCAAAGGTACGTCTAGTTAATTTCATAACAGATCAT
CTATTCTGCTCCTAAAGGGATTTGGCAAATGTGCCGATCTAACTTGGTTG
TCTGTCAAAACAATTAAAACTACGTTGCTTTTTGGTTTTAATGATTATAA
GATTGACATATGATTTTGGTGTGATTGCTTTGCTTTAGCCAATAACTGCG
CACAAAATCTCATTCCGCAAACATGAGCAAATTATTTTATGGAACCATGC
CCTTTAGAGTGAATACTTGCCATGCCATGCGTTGAGTAGTAGAATCTGCT
CAGAGACTAATGTCTAGTTGACCTCTAATTTCTAACGTATTTTGATGGTC
TAAAATAGACGTTACTGCTTAGAAAAATAGCCTTGACGTTTTAAATATAG
GCAAGTTATTCATCAGTAGTCATTATCATCTGCNGTTGATCTCtaatttc
taatatttttttggtTCATGGTCTAGAATAGACGTTACTACTTAAAAAAT
CATTATCGTCTACAGGTCTTCAACTGGAGTTTCCAGAAGATCCTATTACG
AAACTTTCAGACGCCATACGGTACAGCATCAACACACCTGGAATGACTTT
AtatgaaaagttgaaagaaaaggaagaacAGTTTGCTTACCTACGTGTAA
CACTTGGGCCTGACCGCCGTACCGCACCTGGTATTCCCTATGTTCTAGAG
ATCTGGCCTTCAGGTAAGGAGATTTGATTATGTCCGGCATTGACTAGTTT
ACTGTagtattaccttaagggaattaattttcgcgggacttattttcACG
ACTAACTTCGACTgtaaattttcgcgaggatttaatttcgcgaattgacg
aattttttcagattttcagatttttccttAGTTTGATTACGAGATTTTGT
GTGTTTAGTAGAGTCTTATATCTTCATAactgaataaaaatttattcgaa
ttacagagacatTCGAGAGTCATTTAAGAGAGTTTCCATTAGATCAAAAA
ACTTAGAATTTTTAgcgtaaaaaaattaattttcgagaggatcaaatttt
gcgaatttagCGAGAGAtgagagtttgaaaattttcgcgagagattatat
ttcgcgaaaaagttgaaattcgcgaaaattcgcgaaatataatccccgcg
aaaatttattcccttaaggtaccatgtttgtaatttttgatagaAAGATC
GGGGACCGCCATAGAGCTTGGTGTATGTGGTTTATACTATGATTTTCATT
ACATGGTATAATTATTTTGATGTATCCCTCTAACAACCCTAACTCCACAA
TGGGATTTGGTTTAGGCCTACCAGGGTCCAATGTCTGTCTTTGTGAGCAC
GTTAAATGTACTATGTACCAGTGTATCTCTCGCAGTACCTCTAcggcaat
aaattttgaaattagccgtagatatcgggtctgtaTTTAGACTAATGTTA
ACGCAATTACACCAGACATTACAAGTCAATTCTGCCATGCACTTTTTCAA
ATTATACGCTCAtatgttttcttcttttatattaCTAATTGCGAAATTAG
CATGATCAGGGAATTGTCCAGGGTTGATGAATCTATATTTTCTTTCTCAG
GAAAAGGAAGCCCTATCCATAATCATGGAGGAGCATGTGCAATAATTAAA
GTGCTATTTGGTAGAATCACTTGCAACATCTACAACAAGATCACACAGCC
ACCGGAACAAACAGAAATGCAACCTTTGACCAGATTTGATCTCAATGAAG
AGCAAATGACCTGGATAGGCCCCAACTGGTATCAAACGCATCGCTTACAC
AACAACACTGATGATTTCTGCGCAACCATACAATGCTATCGATATGACTT
CAATGATGCAATTCACTGGCCCAATTTCGATTATGTGGGTTTTGTAGAAG
ACAAAGAAAAATACGAGTTGGAAGAATTCTATCCAGATAGCGATTTCACG
TTCGTTAATTTGAGACGAACTGTTCTTGACGAGtttcaaaaattcttaga
aGGATGAGTTATGATTTTAACTTTCCTGCAAAGATTGCAGTGCTTTcaag
taaataaatattttgttagCGTTTTTTTTTCACAGTAAACAGTAAACCAT
GTTACATTTTAAAACGTTATACTGTTGAACCCCCATGTAATTTGTATTTA
ATAAATTGAAAGACCTATGTGTGAATCGAAAAAAAACTTGATAATTTCac
aattaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000729XLOC_000729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001358-exon-sc0000010-1491911889:596149..596555TCONS_00001358-exon-sc0000010-1491911889:596149..596555Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1510915933:596149..596555TCONS_00001358-exon-sc0000010-1510915933:596149..596555Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1575043694:596149..596555TCONS_00001358-exon-sc0000010-1575043694:596149..596555Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1491911889:597024..597186TCONS_00001358-exon-sc0000010-1491911889:597024..597186Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1510915933:597024..597186TCONS_00001358-exon-sc0000010-1510915933:597024..597186Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1575043694:597024..597186TCONS_00001358-exon-sc0000010-1575043694:597024..597186Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1491911889:601688..601918TCONS_00001358-exon-sc0000010-1491911889:601688..601918Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1510915933:601688..601918TCONS_00001358-exon-sc0000010-1510915933:601688..601918Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1575043694:601688..601918TCONS_00001358-exon-sc0000010-1575043694:601688..601918Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1491911889:602414..602611TCONS_00001358-exon-sc0000010-1491911889:602414..602611Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1510915933:602414..602611TCONS_00001358-exon-sc0000010-1510915933:602414..602611Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1575043694:602414..602611TCONS_00001358-exon-sc0000010-1575043694:602414..602611Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1491911889:603499..604106TCONS_00001358-exon-sc0000010-1491911889:603499..604106Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1510915933:603499..604106TCONS_00001358-exon-sc0000010-1510915933:603499..604106Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1575043694:603499..604106TCONS_00001358-exon-sc0000010-1575043694:603499..604106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:596149..604106 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.222858	0	0.416103	0	0	0.246715	0.359454	6.50873	13.2132	3.92777	1.706	2.32498	2.68732	10.0411	1.16752	25.7382	18.9752	40.3368	43.4503	1.72128	2.11611	2.70167	6.60817	37.6546	74.2194	12.8259	23.7743	23.999	10.3097
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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