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TCONS_00001358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001358
Unique NameTCONS_00001358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001358 ID=TCONS_00001358|Name=TCONS_00001358|organism=Clytia hemisphaerica|type=transcript|length=1607bp
CGAGGGAGACAATTTAAAACTTGCATCATTCAACGAAAACGGCAAATAAG
TTTTCAAGAGAAACTGTTGTTAGAAGCTGAGCTGTATAACCAAGTTGAAC
TATGCCTCAAAGAAGGACTGCTGTCTTCCCCGTAAACGGTCAAGGGACTC
TAGTCTATACCGTTCGTAAAAAGAGTCAATTCACCATCTACATAACACCT
GACAAACAAAAGGTACCAAAAAGCTTGGATTTTGATAGTGAATTCTCAGA
GTTTGAAGAGGAGCAAAGTTTTGATACGGAGAACTACATCTCGTTGACTG
TTGGTGAGAATTTTGCACGTTTCAAACTGAAGATGCATAAAGATGATGAA
GAGAGAGTGTTGAAAGAAGAATATGGGAAAAATATTGGAATTGAACCTAA
AGAACTGGTCACTTATTGGTTTAGTTACGACCGCGATGCACTGACCTTGA
AATACGGCAAAGGGCACGTTATGACTCAAACAACACTGTTAGAATTCCCT
TTCTTGGAAGGCAAATCGAAAGGCGAAGAAGAACACATCCGAAAGAAGTA
CAATATTTTCTTCAACGCAGaAGAGAAAAAATACGTGGTTGCCGAATCGG
AGAAAATGGTGGAGGACGTGACAGGAGGACTGGTCAAAATCGAACAGACG
TTACAATTCTATCCCAACCCTCTCGTGACTAATTTCTCACCTATCGTTAA
AGATAGCTCGAAAGTCACTTTGTTCGATCTTGATCGAGATCAATTCATGT
TTTCAAGTAGCCTACCACCTGCCTGTAAAGAACTCTACGATAATATCAAA
GGTCTTCAACTGGAGTTTCCAGAAGATCCTATTACGAAACTTTCAGACGC
CATACGGTACAGCATCAACACACCTGGAATGACTTTAtatgaaaagttga
aagaaaaggaagaacAGTTTGCTTACCTACGTGTAACACTTGGGCCTGAC
CGCCGTACCGCACCTGGTATTCCCTATGTTCTAGAGATCTGGCCTTCAGG
AAAAGGAAGCCCTATCCATAATCATGGAGGAGCATGTGCAATAATTAAAG
TGCTATTTGGTAGAATCACTTGCAACATCTACAACAAGATCACACAGCCA
CCGGAACAAACAGAAATGCAACCTTTGACCAGATTTGATCTCAATGAAGA
GCAAATGACCTGGATAGGCCCCAACTGGTATCAAACGCATCGCTTACACA
ACAACACTGATGATTTCTGCGCAACCATACAATGCTATCGATATGACTTC
AATGATGCAATTCACTGGCCCAATTTCGATTATGTGGGTTTTGTAGAAGA
CAAAGAAAAATACGAGTTGGAAGAATTCTATCCAGATAGCGATTTCACGT
TCGTTAATTTGAGACGAACTGTTCTTGACGAGtttcaaaaattcttagaa
GGATGAGTTATGATTTTAACTTTCCTGCAAAGATTGCAGTGCTTTcaagt
aaataaatattttgttagCGTTTTTTTTTCACAGTAAACAGTAAACCATG
TTACATTTTAAAACGTTATACTGTTGAACCCCCATGTAATTTGTATTTAA
TAAATTGAAAGACCTATGTGTGAATCGAAAAAAAACTTGATAATTTCaca
attaaaa
Run BLAST on NCBI

transcript from alignment at sc0000010:596149..604106+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001358 ID=TCONS_00001358|Name=TCONS_00001358|organism=Clytia hemisphaerica|type=transcript|length=7958bp|location=Sequence derived from alignment at sc0000010:596149..604106+ (Clytia hemisphaerica)
CGAGGGAGACAATTTAAAACTTGCATCATTCAACGAAAACGGCAAATAAG TTTTCAAGAGAAACTGTTGTTAGAAGCTGAGCTGTATAACCAAGTTGAAC TATGCCTCAAAGAAGGACTGCTGTCTTCCCCGTAAACGGTCAAGGGACTC TAGTCTATACCGTTCGTAAAAAGAGTCAATTCACCATCTACATAACACCT GACAAACAAAAGGTACCAAAAAGCTTGGATTTTGATAGTGAATTCTCAGA GTTTGAAGAGGAGCAAAGTTTTGATACGGAGAACTACATCTCGTTGACTG TTGGTGAGAATTTTGCACGTTTCAAACTGAAGATGCATAAAGATGATGAA GAGAGAGTGTTGAAAGAAGAATATGGGAAAAATATTGGAATTGAACCTAA AGAACTGGTAAGCTGTACCAATCACATCGTTTTTTCTCGTACTTTTATTA ACTTTTAACTAATTCAATTTGTAATTCCGTTGCGAAATATTCTTTTAAAT TACAAGTCTGTATGTAACATAGTTTTTGGATACCCTACTTTCTAAGATTC CAGCAACGAACATCCCTTTCGAttgtaaaattttcatttttatcaaccCT GATGGACCTTTTTGGACCTCTCCAAGGAGACCTAAAAGTAGCCATTATAG AGTACAAACTTTACGATTTGTCTAAGCCATATAAGTACACCTGCCAATAA TGCTGGGTCATTCATTCTGACTGACTTTTAAAATTACTGATTCAGGGCTG ACTCTTTTTCCCAGAGCTATTATGTTGGATCAAATTTATACTTCAgttac ttttttttctttcttacaagTATTGCTTAAAAGCAATCGATTTTCTTTAC AATCAGATCTCATTTTTGGTTGCAGGTCACTTATTGGTTTAGTTACGACC GCGATGCACTGACCTTGAAATACGGCAAAGGGCACGTTATGACTCAAACA ACACTGTTAGAATTCCCTTTCTTGGAAGGCAAATCGAAAGGCGAAGAAGA ACACATCCGAAAGAAGTACAATATTTTCTTCAACGCAGGTTAGATTTCGA ACTCACCAATAATATTATCAATCAACTTTTGTCTACTTtgttaaaaagtt tattttaagTCTGTCCGTCTGTCTACCTGTATGTCTGTATGCCCGAGAAA acctttgactttttttttacaaatcgACACTGAGTTCGAAttattgattt tgtattttaatttttcttgaaGAGAGAAAATACGTGGTTACCGAATCAGA GAAAATAATGGAGGACGTGACAGGAGGACTGGTCAAAATCGAACAGACGT TACAATTCTATTCCAACCCTCTCGTGACTAATTTCTCACCTATCGTTAAA GATAGTTCGAAAGTCACTTTGCTTGATCTTGATCGAGATCAATTCATGTT TTCCAGTAGTCTACCACCTGCCTGTAAAGAACTCTACGATAATATTAAAG GTATATCTAGTTGACTTCCAATGTCTAATTTTTTGTGGTCTTTAGTTTCC TAATAAATAATACCATACCAGAACCCATAGTATAATTAATGTATATCGTG CTGCTCATGCTCTGTCTTTATCAAACTGCAATCACCGCATGTCAAATCTT GTTGTCGAATATGTCGTTTGCTCTTCTCTCGTTTTAAAGGCCagagtaag taagtaagtctaaGACCGCAGTCAGAAGTCTGAAGGCTTCTTTCGACAGC TATTACCCAAAGGTAAAAAGGGTGGGCGCCAATTTTTACTCCCTGGACTG CTGCACTtatccttgatccttctcttaattgctgagcatcaaacaaagaa gcatcaagtaccattttgggaatctttggtattaCCCGCTTGGGGTGGAA CCCACAACCtagcgaaccgtagccggaagctctaccactgcactacggtc gctgaaGGCCATAGgtataaatactttttggaaattaGAAATCATTGTCT TCTGCAGGTCTCCAACTGGAGTTTCCAGAAGATCCTATTACGAAACTTTC AGACGCCATACGGTACAGCATCAACACACCTGGAATGACTTTAtacgaaa agttgaaagaaaaggaagaacAGTTTGCTTACCTACGTGTAACACTCGGT CCTGACCGCCGNAGCCGGaagctctaccactgcactacggtcgctgaaGG CCATAGgtataaatactttttggaaatttgaaatcatTATCGTCTACCGC GCCTGGTATTCCCTATGTTCTAGAGATCTGGCCTTCAGGTAAGGAGATGG TTCAGTGCAGCTCGCTTTGGCAAGTTAACCGTAGTGGTAGTAACATGTTT TCAATATTTAAGAGGGAGATCATGAATCGCATTACTCGTTGATGTGTCTT GATGTATACCGGATGGTCCAAAGAAAGTTTccataaattcaaaatttatg attttcatCACAAAGTGTTAGAACAACTATCCACCGCACAAACAGATAGG GTTGATTCTACCAGCGTCGATGAAtatcaatttctgaaaattttccgATA GAGTGACTTCAGACATCGGTGGTCTCTCGCCCCTGGGAAACTATAACTAT ACTATAAAAGTAACTTAATTCNACTTTTTCAGATTATACGCTCAtatgtt ttcttcttttatattaCTAACTGCGAAATAAATTAGCATGGTCAGGGGAT TGTCCAGGGTTGATGAATCTATATTTGCTTTCTTTCTCAGGAAAAGGAAG CCCTATCCATAATCATGGAGGAGCATGCGCTATCATTAAAGTGCTATTTG GTAGAATCACTTGCAACATCTACAACAAGATCACACAGCCACCAGAACAA ACAGAAATGCAACCTTTGACCAGATTTGATCTCAATGAAGAGCAAATGAC CTGGATAGGCCCCAACTGGTATCAAACGCATCGCTTACACAATAACACTG ATGATTTCTGCGCAACCATACAATGCTATCGATATGACTTCAATGATGCA ATTCGCTGCCCAAATTTCCATTATGTGGGTTTTGTAGAAGGCAAAGAAAA ATATGAGTTGGAAGAATTCTATCCAGATAGCGATTTCACGTTCGTTAATT TGAGACGAACTGTTCTTGACGAGTATCAAAAATTCTTGGAAGGCTGAGTa gtgattttgattttattttttttctgtaaaagtgttgtttttaatcaaat tttatttaGCCCTCTTAGCCGAGGGTAATCTAAAAGATATTTTAGAGCTT CTACagtttaaccctatttttatcagtgGGGGTGTTTTCCATCAGCCTGG CATTTATTTGCTAATAGCTTTGTATTTGTCTGATACTTTCGTACACAAGT CGTTTCTTTTGTCAGTAATGAGTTGTGGTAGCGAACCCCAAATGAACTTT CTGGTGCGAACCCTGAAACAAGATTTTGACAAGATAGTCTACCTGCAGGC TTTTATTGGCACGGCCAGTAAAAGAGTCGCGGTATTTCAGCACGGTAAAA TAAAAAGACGCAATTGTTAAAGAGTTAACGACTTAAAAGTATCAAAGAGT TGGACAATAAAAGGCTAtttcatatttaaaaaaaaatcaaatttgtttaa TACCGATTTAGTTGTATGAAAAGAGATTCTCGAAAAACATTATCAGTGAT TCGACAAAACATACTTTCACCGAAGTTTCTTTTAAGATAATCCTATAGAG TCTGTGTAAAACATGATAAGGCAAGTGGGTAAAACGATATGAACCTTTTG TCGGGAGATGATGATTCGTATGACAATCTCGTAATTAGGAACTTATAGTA TTTTTATAGACTTAAAAAAGCTTTGTTAGTTCTATGTTGTTTTAATGATC TTTGATGTTTAGTAAattcaaacaaacaaacgaAAATACTAGTAAGGAAA TAATTCTCGTTCCAACACaatcttacacgtttttttataagaacaaacta tataagaacataaggcttcgatgaccaaaatgttaagaataagttaagaa cattttaaggcttcgcggactcaaAAACAGCCAATtacttaggaaaatgg acaaaaatacataaaaattgggggaaaataagaacatgttaaggacattt tgaaactcaaaaagttaagaacatctgaaggcttcaaaaaatttggatgt tcttataaaaaaacgtgtatctgtttgaaagaaaattagtttaCTGGTAA TAGACAAGCTCCTCTTCTTTCCTAGAAAGGTGTTTTACATTCTGcgaaaa aaaaaacctaaaaGTTTTTGCTGACTCAAACAGTGATTTGAATCTGTGAC TATCTTGTGACTATCAGCCTCTTTCCAATCCTTTATATAAAGCCGCCATA ATGTGTACgaatcttcaaaactactttactTGTAAACCGCGAGGGAGACA ATTTAAAACGTGCATCATTCAACGAAAACGGCAACTAAGTTTTCAAGAGA AACTGTTGTTAGAAGCTGAGCTGTTTAAACCAAGGTGAGCTATGCCTCGA AGAAGGACTGCTGTCTTTCCCGTAAACGGTCAAGGGACTCTAGTCTATAC CGTTCGTAAGAAGAGTCAATTCACCATCTACATAACACCTGACAAACAAA AGGTACCAAAAAGCTTAGATTTCGATAGTGAATTCTCAGAGTTTGAAGAG GAGCAAAGTTTTGATACGGAGAACTACATCTCGTTGACTGTTGGTGAGAA TTTTGCACGTTTCAAACTGAAGATGCATAAAGATGGTGAAGAGAGAGTGT TGAAAGAAGAATATGGGAAGAATATTGGAATTGAACCCAAAGAACTGGTA AGCTGTACTAATCACATCGTCTTATCTTTCGTCTAGACTTTCTCAGTCTG GTTACGTTACGTAGTTGTACTTCTATTGTTTTTACAGCTATATATCCTGT CCTATACGTAGCGTTCTTAAAGCTCGTGATTTTTCTTTAACGTTGGAATT TGTTTTTGGTTTTAGGTCAGTTATTGGTTCAGTTATGACCGCGATGCACT GACCTTGAAATACGGCAAAGGGCACGTTATGACTCAAACAACACTATTAG AGTTCCCTTTCTTGGAAGGCAAATCGAAAGGCGAAGAAGAGCACATTCGA AAGAAGTACAATATTTTCTTCAATGCAGGTTAGACTTTGAAGTCGCTAAT ATTCTCAATcgacttttgttttttttccctTGGTTATCAACTTCAACTAA GTTTGGGTATaaatctgtctgtctgtctgtctgtctgtctgtctgtctgt ctgtctgtctgtctgtctgtctgtctgtcttaCAATATTGTCACCGGATT TGTCGTTTTATTGGATTTCTCTCATATAATGTGTATGTCGGATGGAAATG GTTATTTAGGTGTGTGACATTGGGTTGATGGATGTTTACTAATTGGCAGT TTTTACACTAGGCTTGGATAGTGTTagttttttcttttggaaaggtgGGT TTTGGCTTTTATCAACAGTTCTGTATTGTTTTCTTCGTGTCTCTCTGTCT GTCTGTCCGTCCGAAGATTTATGGGTTGACCAATTTTCTTACCATTTGAG GCTAGGTTCGAATTattaattttatatttatttttctagaAGAGAAAAAA TACGTGGTTGCCGAATCGGAGAAAATGGTGGAGGACGTGACAGGAGGACT GGTCAAAATCGAACAGACGTTACAATTCTATCCCAACCCTCTCGTGACTA ATTTCTCACCTATCGTTAAAGATAGCTCGAAAGTCACTTTGTTCGATCTT GATCGAGATCAATTCATGTTTTCAAGTAGCCTACCACCTGCCTGTAAAGA ACTCTACGATAATATCAAAGGTACGTCTAGTTAATTTCATAACAGATCAT CTATTCTGCTCCTAAAGGGATTTGGCAAATGTGCCGATCTAACTTGGTTG TCTGTCAAAACAATTAAAACTACGTTGCTTTTTGGTTTTAATGATTATAA GATTGACATATGATTTTGGTGTGATTGCTTTGCTTTAGCCAATAACTGCG CACAAAATCTCATTCCGCAAACATGAGCAAATTATTTTATGGAACCATGC CCTTTAGAGTGAATACTTGCCATGCCATGCGTTGAGTAGTAGAATCTGCT CAGAGACTAATGTCTAGTTGACCTCTAATTTCTAACGTATTTTGATGGTC TAAAATAGACGTTACTGCTTAGAAAAATAGCCTTGACGTTTTAAATATAG GCAAGTTATTCATCAGTAGTCATTATCATCTGCNGTTGATCTCtaatttc taatatttttttggtTCATGGTCTAGAATAGACGTTACTACTTAAAAAAT CATTATCGTCTACAGGTCTTCAACTGGAGTTTCCAGAAGATCCTATTACG AAACTTTCAGACGCCATACGGTACAGCATCAACACACCTGGAATGACTTT AtatgaaaagttgaaagaaaaggaagaacAGTTTGCTTACCTACGTGTAA CACTTGGGCCTGACCGCCGTACCGCACCTGGTATTCCCTATGTTCTAGAG ATCTGGCCTTCAGGTAAGGAGATTTGATTATGTCCGGCATTGACTAGTTT ACTGTagtattaccttaagggaattaattttcgcgggacttattttcACG ACTAACTTCGACTgtaaattttcgcgaggatttaatttcgcgaattgacg aattttttcagattttcagatttttccttAGTTTGATTACGAGATTTTGT GTGTTTAGTAGAGTCTTATATCTTCATAactgaataaaaatttattcgaa ttacagagacatTCGAGAGTCATTTAAGAGAGTTTCCATTAGATCAAAAA ACTTAGAATTTTTAgcgtaaaaaaattaattttcgagaggatcaaatttt gcgaatttagCGAGAGAtgagagtttgaaaattttcgcgagagattatat ttcgcgaaaaagttgaaattcgcgaaaattcgcgaaatataatccccgcg aaaatttattcccttaaggtaccatgtttgtaatttttgatagaAAGATC GGGGACCGCCATAGAGCTTGGTGTATGTGGTTTATACTATGATTTTCATT ACATGGTATAATTATTTTGATGTATCCCTCTAACAACCCTAACTCCACAA TGGGATTTGGTTTAGGCCTACCAGGGTCCAATGTCTGTCTTTGTGAGCAC GTTAAATGTACTATGTACCAGTGTATCTCTCGCAGTACCTCTAcggcaat aaattttgaaattagccgtagatatcgggtctgtaTTTAGACTAATGTTA ACGCAATTACACCAGACATTACAAGTCAATTCTGCCATGCACTTTTTCAA ATTATACGCTCAtatgttttcttcttttatattaCTAATTGCGAAATTAG CATGATCAGGGAATTGTCCAGGGTTGATGAATCTATATTTTCTTTCTCAG GAAAAGGAAGCCCTATCCATAATCATGGAGGAGCATGTGCAATAATTAAA GTGCTATTTGGTAGAATCACTTGCAACATCTACAACAAGATCACACAGCC ACCGGAACAAACAGAAATGCAACCTTTGACCAGATTTGATCTCAATGAAG AGCAAATGACCTGGATAGGCCCCAACTGGTATCAAACGCATCGCTTACAC AACAACACTGATGATTTCTGCGCAACCATACAATGCTATCGATATGACTT CAATGATGCAATTCACTGGCCCAATTTCGATTATGTGGGTTTTGTAGAAG ACAAAGAAAAATACGAGTTGGAAGAATTCTATCCAGATAGCGATTTCACG TTCGTTAATTTGAGACGAACTGTTCTTGACGAGtttcaaaaattcttaga aGGATGAGTTATGATTTTAACTTTCCTGCAAAGATTGCAGTGCTTTcaag taaataaatattttgttagCGTTTTTTTTTCACAGTAAACAGTAAACCAT GTTACATTTTAAAACGTTATACTGTTGAACCCCCATGTAATTTGTATTTA ATAAATTGAAAGACCTATGTGTGAATCGAAAAAAAACTTGATAATTTCac aattaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000729XLOC_000729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001358-exon-sc0000010-1491911889:596149..596555TCONS_00001358-exon-sc0000010-1491911889:596149..596555Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1510915933:596149..596555TCONS_00001358-exon-sc0000010-1510915933:596149..596555Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1575043694:596149..596555TCONS_00001358-exon-sc0000010-1575043694:596149..596555Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1491911889:597024..597186TCONS_00001358-exon-sc0000010-1491911889:597024..597186Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1510915933:597024..597186TCONS_00001358-exon-sc0000010-1510915933:597024..597186Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1575043694:597024..597186TCONS_00001358-exon-sc0000010-1575043694:597024..597186Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1491911889:601688..601918TCONS_00001358-exon-sc0000010-1491911889:601688..601918Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1510915933:601688..601918TCONS_00001358-exon-sc0000010-1510915933:601688..601918Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1575043694:601688..601918TCONS_00001358-exon-sc0000010-1575043694:601688..601918Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1491911889:602414..602611TCONS_00001358-exon-sc0000010-1491911889:602414..602611Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1510915933:602414..602611TCONS_00001358-exon-sc0000010-1510915933:602414..602611Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1575043694:602414..602611TCONS_00001358-exon-sc0000010-1575043694:602414..602611Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1491911889:603499..604106TCONS_00001358-exon-sc0000010-1491911889:603499..604106Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1510915933:603499..604106TCONS_00001358-exon-sc0000010-1510915933:603499..604106Clytia hemisphaericaexon
TCONS_00001358-exon-sc0000010-1575043694:603499..604106TCONS_00001358-exon-sc0000010-1575043694:603499..604106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:596149..604106 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.222858 0 0.416103 0 0 0.246715 0.359454 6.50873 13.2132 3.92777 1.706 2.32498 2.68732 10.0411 1.16752 25.7382 18.9752 40.3368 43.4503 1.72128 2.11611 2.70167 6.60817 37.6546 74.2194 12.8259 23.7743 23.999 10.3097
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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