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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001346 ID=TCONS_00001346|Name=TCONS_00001346|organism=Clytia hemisphaerica|type=transcript|length=2189bp
GTGGGCACATAAAGTTGCTGTTCATTTCGGTGGTAATTTTCCCTGTGAGA
TTTGTGGCAAGAAATGTATAACTGGTGCTGAGTTGAGACGTCACATGACA
TCCCATTCGACCGAGCGTCGTTTCGTTTGCCAGTATTGTGGATTAGCCTA
TAAACGATGGTCACACTTGTATCAGCATTTGCGTGTTCACgaagaagaga
aaaatttccGTTGTGATGTTTgtcatttgaatttcaaagtTCAGTCTGAA
TTGAAGGATCATTGTTTTGCTGAGCACTCGGACGGTAAAATGGTCCAGTG
TAGTGTATGTAAACATAAGCTACAAACACCTCTTGCCGTTTATCATCATA
GTATGAAACACACAGGTACTCGTGACTTCATTTGCGAGATTTGTGGCTCG
AATTTCAAACGAAAACAACATCTGGTTACTCACATGAAAACACATTTGAC
GGAAAAGAAAGCAACCGATGGTAGTGAAGAAGTGTATCATTGTCAAGCTT
GCGATGAAAGTTTCACGTTAAAAATGGATCTGAAAGCACATTGCACAGCC
GCACATCCTTTGCTGGGAGACGAGAGCGTAGCTTGTAGAACATGTCAAAA
GAGACTGAAAGTATCACATTCAGTTTATCTACACGGCTTACGTCATTTTG
GTGCACGTGACTTCAAATGTACGTTATGTAACCAGTTCTTTAAAAGGAAA
GCCCATTTATTACGTCATTCATTAGATCGTCATCCAGAACAACCGAGAGA
ACGAAAAAAACGAACAGTCCAAGTCGATGGAATCACATGCGATCTTTGCC
AGAAATCTTTCAAGTACAAGAACGCACTCGTCAAACACATGACAACCCAA
CACGGAATATTACCATCTCAAGACCCAAGTACTGAACTTGGCATTGTCGT
CAAAAAAGGAATCAAACGTCCTCACAAATGTGACGTATGTAGCAAACGTT
TCAAATCCAAAAATGGTCTCGCTAAGCATAAGGTTAATAAACATTCGTTG
GAAAGTGAAAACAGTATTGTGATTCTTGGTGAAGACGGCTCAAAGGATTT
GGAGGAGAAAGGAAACGTTCGCGAAGAAGATGAAGTCGACGATGACGATG
ACGAAGATATCGAAACAGATTCTGAAACTGAAACGCCTCAGATACTGCAA
AACCAAGCTATTGCTGAACCACAATTACTTCAAAACCAATCAGTCGAATT
ATCTTCATCTTCTCGGCAAAAAAGTGAACCCATGGAAGTTGACCAACAAC
AACCAGAGATGGTGGACCATGACGACAATGTGTTACATGAGTTGGATGTT
ACGACAAACAGCGATGATAAGGATGCTACCAATAATTTCCGTGTAGTTCC
TATTGAGCATTTCAATACTTCAACTGGAGCAGGGACTTCCAATGTGGGCT
CATCAGCTGATAACGTACCACACCAAGTAATCACTGTAGACGAAGCTACC
GGTCAAATCATCCTGATGACAACAAATGCACCACCATCCAACCAACAAGA
TGTGAAAGACAACAAAACCGGACCGTCGGATGTGGGTACAAACCAGATTA
TACCTGTCGATGATGCATCCAGAGCCTCACCGATCATCACAGTACGAGAA
TCCGATCAATCAACGAGTGCAGCATTCGAAGGTCAGGCGGTCGATCCTTC
TCAAATCCGGGCACTCACATCGGCAGCCCAACAACAGCAATTAACTACCG
GACAGCTCCAACAAGTACAAATCGGACAGATTTTGAATCAGGATGGAGTC
ACGCTTGCGTCAGTACCAATCCAATCCGTACAAGGAGTAGGTGATGGTCA
GAATATAATCAATTTTTCACAAGGAAGTAATGAACAAATTGTTGTTTTAC
TATCCGCTCTGAACTCTGAGAACATTCAACAAATTCAAtaacatttcaat
ttcatcataatCGTTTAAGACAAAAGGTTTTtctagtttttattttattt
tttgaatacgTATGTTTTAGATATCGATTTCAAACTGAGTTCATTTTCTG
ccattttttaatattgaatgatttttttttctagcCTATAATATGTGCTC
GGAAAAAAAGCGGTACTGATCTGAAAAAAGTAAATTCATCAAATTAGTCC
GTTGTTCAATTTCCAATTTCGAAGTATATCAAGAATAAGTGAACACCTTT
CGTTTATTaaatagatttaaaaattgCGATCAATCTTCC Run BLAST on NCBI transcript from alignment at sc0000010:505963..508214+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001346 ID=TCONS_00001346|Name=TCONS_00001346|organism=Clytia hemisphaerica|type=transcript|length=2252bp|location=Sequence derived from alignment at sc0000010:505963..508214+ (Clytia hemisphaerica)
GTGGGCACATAAAGTTGCTGTTCATTTCGGTGGTAATTTTCCCTGTGAGA
TTTGTGGCAAGAAATGTATAACTGGTGCTGAGTTGAGACGTCACATGACA
TCCCATTCGACCGAGCGTCGTTTCGTTTGCCAGTATTGTGGATTAGCCTA
TAAACGATGGTCACACTTGTATCAGCATTTGCGTGTTCACgaagaagaga
aaaatttccGTTGTGATGTTTgtcatttgaatttcaaagtTCAGTCTGAA
TTGAAGGATCATTGTTTTGCTGAGCACTCGGACGGTAAAATGGTCCAGTG
TAGTGTATGTAAACATAAGCTACAAACACCTCTTGCCGTTTATCATCATA
GTATGAAACACACAGGTACTCGTGACTTCATTTGCGAGATTTGTGGCTCG
AATTTCAAACGAAAACAACATCTGGTTACTCACATGAAAACACATTTGAC
GGAAAAGAAAGCAACCGATGGTAGTGAAGAAGTGTATCATTGTCAAGCTT
GCGATGAAAGTTTCACGTTAAAAATGGATCTGAAAGCACATTGCACAGCC
GCACATCCTTTGCTGGGAGACGAGAGCGTAGCTTGTAGAACATGTCAAAA
GAGACTGAAAGTATCACATTCAGTTTATCTACACGGCTTACGTCATTTTG
GTGCACGTGACTTCAAATGTACGTTATGTAACCAGTTCTTTAAAAGGAAA
GCCCATTTATTACGTCATTCATTAGATCGTCATCCAGAACAACCGAGAGA
ACGAAAAAAACGAACAGTCCAAGTCGATGGAATCACATGCGATCTTTGCC
AGAAATCTTTCAAGTACAAGAACGCACTCGTCAAACACATGACAACCNCA
TGCGATCTTTGCCAGAAATCTTTCAAGTACAAGAACGCACTCGTCAAACA
CATGACAACCCAACACGGAATATTACCATCTCAAGACCCAAGTACTGAAC
TTGGCATTGTCGTCAAAAAAGGAATCAAACGTCCTCACAAATGTGACGTA
TGTAGCAAACGTTTCAAATCCAAAAATGGTCTCGCTAAGCATAAGGTTAA
TAAACATTCGTTGGAAAGTGAAAACAGTATTGTGATTCTTGGTGAAGACG
GCTCAAAGGATTTGGAGGAGAAAGGAAACGTTCGCGAAGAAGATGAAGTC
GACGATGACGATGACGAAGATATCGAAACAGATTCTGAAACTGAAACGCC
TCAGATACTGCAAAACCAAGCTATTGCTGAACCACAATTACTTCAAAACC
AATCAGTCGAATTATCTTCATCTTCTCGGCAAAAAAGTGAACCCATGGAA
GTTGACCAACAACAACCAGAGATGGTGGACCATGACGACAATGTGTTACA
TGAGTTGGATGTTACGACAAACAGCGATGATAAGGATGCTACCAATAATT
TCCGTGTAGTTCCTATTGAGCATTTCAATACTTCAACTGGAGCAGGGACT
TCCAATGTGGGCTCATCAGCTGATAACGTACCACACCAAGTAATCACTGT
AGACGAAGCTACCGGTCAAATCATCCTGATGACAACAAATGCACCACCAT
CCAACCAACAAGATGTGAAAGACAACAAAACCGGACCGTCGGATGTGGGT
ACAAACCAGATTATACCTGTCGATGATGCATCCAGAGCCTCACCGATCAT
CACAGTACGAGAATCCGATCAATCAACGAGTGCAGCATTCGAAGGTCAGG
CGGTCGATCCTTCTCAAATCCGGGCACTCACATCGGCAGCCCAACAACAG
CAATTAACTACCGGACAGCTCCAACAAGTACAAATCGGACAGATTTTGAA
TCAGGATGGAGTCACGCTTGCGTCAGTACCAATCCAATCCGTACAAGGAG
TAGGTGATGGTCAGAATATAATCAATTTTTCACAAGGAAGTAATGAACAA
ATTGTTGTTTTACTATCCGCTCTGAACTCTGAGAACATTCAACAAATTCA
AtaacatttcaatttcatcataatCGTTTAAGACAAAAGGTTTTtctagt
ttttattttattttttgaatacgTATGTTTTAGATATCGATTTCAAACTG
AGTTCATTTTCTGccattttttaatattgaatgatttttttttctagcCT
ATAATATGTGCTCGGAAAAAAAGCGGTACTGATCTGAAAAAAGTAAATTC
ATCAAATTAGTCCGTTGTTCAATTTCCAATTTCGAAGTATATCAAGAATA
AGTGAACACCTTTCGTTTATTaaatagatttaaaaattgCGATCAATCTT
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001346-exon-sc0000010-1491911889:505963..506748 | TCONS_00001346-exon-sc0000010-1491911889:505963..506748 | Clytia hemisphaerica | exon |
| TCONS_00001346-exon-sc0000010-1510915933:505963..506748 | TCONS_00001346-exon-sc0000010-1510915933:505963..506748 | Clytia hemisphaerica | exon |
| TCONS_00001346-exon-sc0000010-1575043694:505963..506748 | TCONS_00001346-exon-sc0000010-1575043694:505963..506748 | Clytia hemisphaerica | exon |
| TCONS_00001346-exon-sc0000010-1491911889:506812..508214 | TCONS_00001346-exon-sc0000010-1491911889:506812..508214 | Clytia hemisphaerica | exon |
| TCONS_00001346-exon-sc0000010-1510915933:506812..508214 | TCONS_00001346-exon-sc0000010-1510915933:506812..508214 | Clytia hemisphaerica | exon |
| TCONS_00001346-exon-sc0000010-1575043694:506812..508214 | TCONS_00001346-exon-sc0000010-1575043694:506812..508214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:505963..508214 + |
Blast
BLAST of TCONS_00001346 vs. Swiss-Prot (Human)
Match: ZFP90 (Zinc finger protein 90 homolog OS=Homo sapiens GN=ZFP90 PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 8.886e-34 Identity = 101/362 (27.90%), Postives = 150/362 (41.44%), Query Frame = 2
Query: 38 FPCEICGKKCITGAELRRHMTSHSTERRFVCQYCGLAYKRWSHLYQHLRVHEEEKNFRCDVCHLNFKVQSELKDHCFAEHSDGKMVQCSVCKHKLQTPLAVYHHSMKHTGTRDFICEICGSNFKRKQHLVTHMKTH--------------------LTEKKATDGSEEVYHCQACDESFTLKMDLKAHC---TAAHPL-------------LGDESVACRTCQKRLKVSHSVYLHGLRHFGARDFKCTLCNQFFKRKAHLLRHSLDRHPEQPRERKKRTVQVDGITCDLCQKSFKYKNALVKHMTTQHGILPSQDPSTELGIVVKKGI-----------KRPHKCDVCSKRFKSKNGLAKHK 982
F C +CGK + L +H +H+ E+ + C CG A++R S L QH R+H EK +RC++C +F+ + L H HS K QC C ++ H HTG + F C ICG F + L HM+ H LT+ ++T + YHC C E F+ D H TA +P G++ C C K K S S H H G + ++C C + F R++ L +H E+P E C C K+F ++L++H T G P + E G +K ++P+ C C K F + L KH+
Sbjct: 282 FECNVCGKAFRHSSSLGQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNLCGRSFRHGTSLTQH-EVTHSGEKPFQCKECGKAFSRCSSLVQHERTHTGEKPFECSICGRAFGQSPSLYKHMRIHKRGKPYQSSNYSIDFKHSTSLTQDESTLTEVKSYHCNDCGEDFSHITDFTDHQRIHTAENPYDCEQAFSQQAISHPGEKPYQCNVCGKAFKRSTSFIEHHRIHTGEKPYECNECGEAFSRRSSLTQHERTHTGEKPYE------------CIDCGKAFSQSSSLIQHERTHTGEKPYE--CNECGRAFRKKTNLHDHQRIHTGEKPYSCKECGKNFSRSSALTKHQ 628
The following BLAST results are available for this feature:
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