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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001334 ID=TCONS_00001334|Name=TCONS_00001334|organism=Clytia hemisphaerica|type=transcript|length=3667bpRun BLAST on NCBI protein sequence of TCONS_00001334-protein >TCONS_00001334-protein ID=TCONS_00001334-protein|Name=TCONS_00001334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=876bp MPTAGGANNSGVRGFFTNFANYTGEKVSEVKELLFGVNIDDSVELASLTSRun BLAST on NCBI transcript from alignment at sc0000010:172492..198180+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001334 ID=TCONS_00001334|Name=TCONS_00001334|organism=Clytia hemisphaerica|type=transcript|length=25689bp|location=Sequence derived from alignment at sc0000010:172492..198180+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000010:172492..198180+ >TCONS_00001334 ID=TCONS_00001334|Name=TCONS_00001334|organism=Clytia hemisphaerica|type=CDS|length=28941bp|location=Sequence derived from alignment at sc0000010:172492..198180+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001334 vs. Swiss-Prot (Human)
Match: ANR28 (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5) HSP 1 Score: 88.5817 bits (218), Expect = 1.347e-17 Identity = 53/157 (33.76%), Postives = 85/157 (54.14%), Query Frame = 3
Query: 1221 LAFVESLLNAGASMNYPDVYGQSIFFAVVRDWHIDVARFAIEKGADVNHRDQYGRTPLHLAAAVNYEEM-VAFIIANGADITAKTEGEEQTPLHYAARYDSVEAMKVLIQAGAMIDGVDFLNRTPLHVAAETGSHEVVKFLMKLGAPT---GVYDSF 1679
++ V+ LL+ G MN P+ YG + + V I+ GA VN +++ G TPLH AAA + + + ++ NGAD+ K++ + +TPLH A + + +IQ+GA+ID D TPLH+AA G ++ L+ GA T G++ F
Sbjct: 219 ISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGALCLELLVGNGADVNMKSK-DGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMF 374 The following BLAST results are available for this feature:
BLAST of TCONS_00001334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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