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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001309 ID=TCONS_00001309|Name=TCONS_00001309|organism=Clytia hemisphaerica|type=transcript|length=1980bpRun BLAST on NCBI protein sequence of TCONS_00001309-protein >TCONS_00001309-protein ID=TCONS_00001309-protein|Name=TCONS_00001309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp MEKPKEMFRFPESFDVSDDNLDKDGTTPSPLDNPSTTPSFFVRNDEEKEKRun BLAST on NCBI transcript from alignment at sc0000010:24431..35448+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001309 ID=TCONS_00001309|Name=TCONS_00001309|organism=Clytia hemisphaerica|type=transcript|length=11018bp|location=Sequence derived from alignment at sc0000010:24431..35448+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000010:24431..35448+ >TCONS_00001309 ID=TCONS_00001309|Name=TCONS_00001309|organism=Clytia hemisphaerica|type=CDS|length=21714bp|location=Sequence derived from alignment at sc0000010:24431..35448+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001309 vs. Swiss-Prot (Human)
Match: TAPT1 (Transmembrane anterior posterior transformation protein 1 homolog OS=Homo sapiens GN=TAPT1 PE=1 SV=1) HSP 1 Score: 400.979 bits (1029), Expect = 9.053e-131 Identity = 199/393 (50.64%), Postives = 271/393 (68.96%), Query Frame = 1
Query: 295 SLLSFISDELERDYLLEQNEKKLKERRKRVYTFFKTPQHLEKFLFFGFLLCFDVFLFIFTFLPXXXXXXX-XXXXXNIFKRNGRKILNPVQKVDLLKGIILVVVSLFMQSIDTSVIYHVVRVQSVIKLYVVYNMLDMADKLLASFGQDVLDALFWTATEPRDRRREHIGIIPHLLLSFAYVSAHVLLNLSQAIVLNVAINSFSKALLTIMISNQFIEIKSSVFKRFEKNNLFQMSCSDARERLHYSIILLVVALRNFAEYEWNIEYAYSSFFPFAALVIGSEFLVDWFKHAFITKFNNIQPDIYLTYRKFLAKNILSSRDDLVFTGHTDQVSRRMGFTALPLAILLIKVVGQCVSLNGINGLCFAFSGYLCLCALKLLVSITVFGKASEYIKD 1470
SLL F+S EL R Y LE NE K ERR+RVYT + P+ LEK + FG LC D FL++FT LP+R+ + L + R++L P Q D+LKG+ILV+ M +D S++YH++R QSVIKLY++YNML++AD+L +SFGQD+LDAL+WTATEP++R+R HIG+IPH ++ YV H +L + QA LNVA NS +K+LLTIM+SN F+EIK SVFK+FEKNNLFQMS SD +ER ++LL+V LRN ++ WN ++ + FP +VI SE VD KHAFITKFN+I D+Y YR LA +++SSR +T ++D V+RRMGF LPLA+LLI+VV + + GI Y L +LK+L SI + GK+ +Y+K+
Sbjct: 69 SLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCLDAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLW-VLFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKVLNSIVLLGKSCQYVKE 460 The following BLAST results are available for this feature:
BLAST of TCONS_00001309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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