TCONS_00001269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001269
Unique NameTCONS_00001269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001269 ID=TCONS_00001269|Name=TCONS_00001269|organism=Clytia hemisphaerica|type=transcript|length=1168bp
gtttaagtcttctaaataacatattttgaaaatatattttcattacatat
aatattttcagaaacttatgttatgagttgGATGTTACGAGTGCtttaca
gttttccggtctgtaatttgtataacctgtgacctgtgttttacactaac
cgataATTGAAAGCTTTTCAACTTGAAATTCTTACAACTGCCAAATTCCT
TTCTATGAAGCGCATGAAAGATGTTTATTTAGTCAATAGTTTTTAACTGA
AAATTACGTTTCTGtgtttattttatgttttagaATTACAAGTGCTTGCG
AAATTATTGTAATGGTTTTGAATAACCATaattatattacaaaaaatgtc
aaagcTTAGGAAAGTCAACTGACGACATTGCATGTTTATTCGATTGATTT
TAAGTTTTAGCGAAGCTGTAGAGAAACATACTTAAGACAGTTACTTTTAT
ATCAAATCGATGTCTGCTGATACTTTAGACTTGTACTTGTATTTTTAGAG
ctttaataaaaacaacaaaaatgagaTCAATTGTTGCATGTTTAGCATTG
CTCAACGTGATAGTCAATGCACAATATTCTCCTTCGAATTACAATGGCAC
TACACCAGACCTTGAAAGCATCATGAAAGGGCGGTGCAGTCAATACAAAG
TGTTCAATCGAGATCCTGAACTTCAAGTCAAAGTAGATTGCAATGAATTA
TGGAATACGTTCACAAAAGCATTCATTAACAAAGACCCATGCAAAGTCAA
TTTCACTGGAGCTTACAAAAAGACTTTTGAGCTGATCGATAACAAGCAAT
TTTATACAAATAAGACAATGTTTTGGACAGGAACACGAGACGTGGTTCAT
GATTTCACTCATGTCAATGATGACTATCGGACCTTAGAAGAAACTTTTGC
AGGatattttgcgAATGATTTAAATTGGTGTGGATGTGATAATTGTGCTG
GAGGAATTGATTATGATTTCTGTAATGAGACATGTAATAAACTGATACCA
TTCCATGGTTATACGTCGGAGTATTGGGCGGAGGCATCACGAATTGTATG
TTCAAATGCTCTTAAAATTAAATGTACCACTAGTCcattaaaagtttcaa
aacctTTCTTTAATAAACCTTACTCAAAGCAGATTCGTAccctattgaaa
attttatttacaattTAT
Run BLAST on NCBI

protein sequence of TCONS_00001269-protein

>TCONS_00001269-protein ID=TCONS_00001269-protein|Name=TCONS_00001269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MRSIVACLALLNVIVNAQYSPSNYNGTTPDLESIMKGRCSQYKVFNRDPE
LQVKVDCNELWNTFTKAFINKDPCKVNFTGAYKKTFELIDNKQFYTNKTM
FWTGTRDVVHDFTHVNDDYRTLEETFAGYFANDLNWCGCDNCAGGIDYDF
CNETCNKLIPFHGYTSEYWAEASRIVCSNALKIKCTTSPLKVSKPFFNKP
YSKQIRTLLKILFTIY
Run BLAST on NCBI

transcript from alignment at sc0000007:1420530..1421979-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001269 ID=TCONS_00001269|Name=TCONS_00001269|organism=Clytia hemisphaerica|type=transcript|length=1450bp|location=Sequence derived from alignment at sc0000007:1420530..1421979- (Clytia hemisphaerica)
GTTTAAGTCTTCTAAATAACATATTTTGAAAATATATTTTCATTACATAT
AATATTTTCAGAAACTTATGTTATGAGTTGGATGTTACGAGTGCTTTACA
GTTTTCCGGTCTGTAATTTGTATAACCTGTGACCTGTGTTTTACACTAAC
CGATAATTGAAAGCTTTTCAACTTGAAATTCTTACAACTGCCAAATTCCT
TTCTATGAAGCGCATGAAAGATGTTTATTTAGTCAATAGTTTTTAACTGA
AAATTACGTTTCTGTGTTTATTTTATGTTTTAGAATTACAAGTGCTTGCG
AAATTATTGTAATGGTTTTGAATAACCATAATTATATTACAAAAAATGTC
AAAGCTTAGGAAAGTCAACTGACGACATTGCATGTTTATTCGATTGATTT
TAAGTTTTAGCGAAGCTGTAGAGAAACATACTTAAGACAGTTACTTTTAT
ATCAAATCGATGTCTGCTGATACTTTAGACTTGTACTTGTATTTTTAGAG
CTTTAATAAAAACAACAAAAATGAGATCAATTGTTGCATGTTTAGCATTG
CTCAACGTGATAGTCAATGCACAATATTCTCCTTCGAATTACAATGGCAC
TACACCAGACCTTGAAAGCATCATGAAAGGGCGGTGCAGTCAATACAAAG
TGTTCAATCGAGATCCTGAACTTCAAGTCAAAGTAGATTGCAATGAATTA
TGGAATACGTTCACAAAAGCATTCATTAACAAAGACCCATGCAAAGTCAA
TTTCACTGGAGCTTACAAAAAGACTTTTGAGCTGATCGATAACAAGCAAT
TTTATACAAATAAGGTTTGACTTTCTATTTGATGCCGATGATGAAATTGT
AGAAATTGTCGTCATGCGACCAAGTTTAAGTCGAACCCATACTTTGTCCT
TTCATGAAGATTTCAGTTCATTGAATTCCTCTGATATTTTCTTCAGACAA
TGTTTTGGACAGGAACACGAGACGTGGTTCATGATTTCACTCATGTCAAT
GATGACTATCGGACCTTAGAAGAAACTTTTGCAGGGTAAGAAAGATTTGA
TATAGTTTAGTAAGACTTTATAGTTTTTTCATCCATCTTTAATTTGAAAA
CTTTATTTAATCACCATTACATTTTCATGGTTTTGTCACATTAAAGCGCT
TCCGCTTTTTGATGGTTTTTTATCTTGTTTTTTAGATATTTTGCGAATGA
TTTAAATTGGTGTGGATGTGATAATTGTGCTGGAGGAATTGATTATGATT
TCTGTAATGAGACATGTAATAAACTGATACCATTCCATGGTTATACGTCG
GAGTATTGGGCGGAGGCATCACGAATTGTATGTTCAAATGCTCTTAAAAT
TAAATGTACCACTAGTCCATTAAAAGTTTCAAAACCTTTCTTTAATAAAC
CTTACTCAAAGCAGATTCGTACCCTATTGAAAATTTTATTTACAATTTAT

Coding sequence (CDS) from alignment at sc0000007:1420530..1421979-

>TCONS_00001269 ID=TCONS_00001269|Name=TCONS_00001269|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at sc0000007:1420530..1421979- (Clytia hemisphaerica)
ATATTTTGCGAATGATTTAAATTGGTGTGGATGTGATAATTGTGCTGGAG
GAATTGATTATGATTTCTGTAATGAGACATGTAATAAACTGATACCATTC
CATGGTTATACGTCGGAGTATTGGGCGGAGGCATCACGAATTGTATGTTC
AAATGCTCTTAAAATTAAATGTACCACTAGTCCATTAAAAGTTTCAAAAC
CTTTCTTTAATAAACCTTACTCAAAGCAGATTCGTACCCTATTGAAAATT
TTATTTACAATTTATACAATGTTTTGGACAGGAACACGAGACGTGGTTCA
TGATTTCACTCATGTCAATGATGACTATCGGACCTTAGAAGAAACTTTTG
CAGGATGAGATCAATTGTTGCATGTTTAGCATTGCTCAACGTGATAGTCA
ATGCACAATATTCTCCTTCGAATTACAATGGCACTACACCAGACCTTGAA
AGCATCATGAAAGGGCGGTGCAGTCAATACAAAGTGTTCAATCGAGATCC
TGAACTTCAAGTCAAAGTAGATTGCAATGAATTATGGAATACGTTCACAA
AAGCATTCATTAACAAAGACCCATGCAAAGTCAATTTCACTGGAGCTTAC
AAAAAGACTTTTGAGCTGATCGATAACAAGCAATTTTATACAAATAAGAT
ATTTTGCGAATGATTTAAATTGGTGTGGATGTGATAATTGTGCTGGAGGA
ATTGATTATGATTTCTGTAATGAGACATGTAATAAACTGATACCATTCCA
TGGTTATACGTCGGAGTATTGGGCGGAGGCATCACGAATTGTATGTTCAA
ATGCTCTTAAAATTAAATGTACCACTAGTCCATTAAAAGTTTCAAAACCT
TTCTTTAATAAACCTTACTCAAAGCAGATTCGTACCCTATTGAAAATTTT
ATTTACAATTTATACAATGTTTTGGACAGGAACACGAGACGTGGTTCATG
ATTTCACTCATGTCAATGATGACTATCGGACCTTAGAAGAAACTTTTGCA
GGATGAGATCAATTGTTGCATGTTTAGCATTGCTCAACGTGATAGTCAAT
GCACAATATTCTCCTTCGAATTACAATGGCACTACACCAGACCTTGAAAG
CATCATGAAAGGGCGGTGCAGTCAATACAAAGTGTTCAATCGAGATCCTG
AACTTCAAGTCAAAGTAGATTGCAATGAATTATGGAATACGTTCACAAAA
GCATTCATTAACAAAGACCCATGCAAAGTCAATTTCACTGGAGCTTACAA
AAAGACTTTTGAGCTGATCGATAACAAGCAATTTTATACAAATAAGATAT
TTTGCGAATGATTTAAATTGGTGTGGATGTGATAATTGTGCTGGAGGAAT
TGATTATGATTTCTGTAATGAGACATGTAATAAACTGATACCATTCCATG
GTTATACGTCGGAGTATTGGGCGGAGGCATCACGAATTGTATGTTCAAAT
GCTCTTAAAATTAAATGTACCACTAGTCCATTAAAAGTTTCAAAACCTTT
CTTTAATAAACCTTACTCAAAGCAGATTCGTACCCTATTGAAAATTTTAT
TTACAATTTATACAATGTTTTGGACAGGAACACGAGACGTGGTTCATGAT
TTCACTCATGTCAATGATGACTATCGGACCTTAGAAGAAACTTTTGCAGG
ATGAGATCAATTGTTGCATGTTTAGCATTGCTCAACGTGATAGTCAATGC
ACAATATTCTCCTTCGAATTACAATGGCACTACACCAGACCTTGAAAGCA
TCATGAAAGGGCGGTGCAGTCAATACAAAGTGTTCAATCGAGATCCTGAA
CTTCAAGTCAAAGTAGATTGCAATGAATTATGGAATACGTTCACAAAAGC
ATTCATTAACAAAGACCCATGCAAAGTCAATTTCACTGGAGCTTACAAAA
AGACTTTTGAGCTGATCGATAACAAGCAATTTTATACAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000673XLOC_000673Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001269-proteinTCONS_00001269-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001269-exon-sc0000007-1575043694:1421166..1421979TCONS_00001269-exon-sc0000007-1575043694:1421166..1421979Clytia hemisphaericaexon
TCONS_00001269-exon-sc0000007-1575043694:1420945..1421033TCONS_00001269-exon-sc0000007-1575043694:1420945..1421033Clytia hemisphaericaexon
TCONS_00001269-exon-sc0000007-1575043694:1420530..1420794TCONS_00001269-exon-sc0000007-1575043694:1420530..1420794Clytia hemisphaericaexon
TCONS_00001269-exon-sc0000007-1510915933:1421166..1421979TCONS_00001269-exon-sc0000007-1510915933:1421166..1421979Clytia hemisphaericaexon
TCONS_00001269-exon-sc0000007-1510915933:1420945..1421033TCONS_00001269-exon-sc0000007-1510915933:1420945..1421033Clytia hemisphaericaexon
TCONS_00001269-exon-sc0000007-1510915933:1420530..1420794TCONS_00001269-exon-sc0000007-1510915933:1420530..1420794Clytia hemisphaericaexon
TCONS_00001269-exon-sc0000007-1491911889:1421166..1421979TCONS_00001269-exon-sc0000007-1491911889:1421166..1421979Clytia hemisphaericaexon
TCONS_00001269-exon-sc0000007-1491911889:1420945..1421033TCONS_00001269-exon-sc0000007-1491911889:1420945..1421033Clytia hemisphaericaexon
TCONS_00001269-exon-sc0000007-1491911889:1420530..1420794TCONS_00001269-exon-sc0000007-1491911889:1420530..1420794Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1420530..1421979 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.36765	2.45313	1.17284	1.18842	12.4224	9.18558	8.84659	9.21714	19.2971	19.5004	17.6533	16.0394	39.3662	36.8195	82.8715	77.7072	44.9067	37.4885	46.8373	56.378	25.6102	27.7924	26.6804	29.7709	25.5793	29.3869	26.4287	21.6007	43.3194	33.8024
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003193ADP-ribosyl_cyclase
Vocabulary: Molecular Function
TermDefinition
GO:0003953NAD+ nucleosidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003953 NAD+ nucleosidase activity
Blast
[Close]
BLAST of TCONS_00001269 vs. Swiss-Prot (Human)
Match: CD38 (ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 OS=Homo sapiens GN=CD38 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.602e-17
Identity = 52/153 (33.99%), Postives = 75/153 (49.02%), Query Frame = 2 
Query:  596 GTTPDLESIMKGRCSQYKVFNRDPELQVKVDCNELWNTFTKAFINKDPCKVNFTGAYKKTFELIDNKQFYTNKTMFWTGTRDVVHDFTHVNDDYRTLEETFAGYFANDLNWCGCDNCAGGIDYDFCNE-----TCNKLIPFHGYTSEYWAEAS 1039
            GTT      +  RC +Y   +  PE++  VDC  +W+ F  AFI+K PC  N T    +    +  +    NK + W+  +D+ H FT V  D  TLE+T  GY A+DL WCG  N    I+Y  C +     + N +  F    S  +AEA+
Sbjct:   54 GTTKRFPETVLARCVKYTEIH--PEMR-HVDCQSVWDAFKGAFISKHPC--NITEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFN-TSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFAEAA 200
The following BLAST results are available for this feature:
BLAST of TCONS_00001269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CD381.602e-1733.99ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 ... [more]
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