TCONS_00001268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001268
Unique NameTCONS_00001268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001268 ID=TCONS_00001268|Name=TCONS_00001268|organism=Clytia hemisphaerica|type=transcript|length=1256bp
tttagatctcGGGAAAGTTCACTTtaataaagagagaaacttttttgtgg
cgcacccagtaggaaattttcagttttcgGTTTTTAGTTATATAGCTAAG
TAAGTCGGCTAAGTATTCTTTCTAAATCGTTATTTTTAGAGAATCATGTG
GTGAAAAAACCATTAAACGTTTGGTGGAAGACGCTCATAGATATGGAATT
GAAAAGGTGCATTGCTACGATGAACCCTTGATGGTAAAAAGTGTATTATG
TGCGAAATACCCAGATGCTAGAGAGTGCCAGCCGGTCAACGCAAGTAAAG
TCGAAAGCTGGAAAGAAGCGACCATAGCCCTGATTGCTGTTTCGTGTGTT
TTATTCATCGCTGTCATCCTTCTCCTCGTCTTGTACAATCGACGAAGAAT
GGATTCGTCTACCTACAAACGAGACATCGATACATAGAGACATCCATCCA
TCTTTGATAttggttgatatttgttttgttgacgAACGGTTGAAATTACA
CCTGATTTTGAATGCGGGTGATGCCGGGGAATATAAAGCATACGTGGCTA
TAGATTGATCTTCATTTGGTAGCACTATTACTGGCATTTTACAGAACCTT
TTTTTAATCATCACAACCCCGCCTTAAAACATGCTATTCTTATAGGTTTA
ACGAACTAACGTTATTAAATCAACTACCATTTGTCAAAGACTTTCTTTTT
ACGATTTTacgtttttgaaagaaaaattacaacaTGTTTTGAGGGgttgt
gtgtgtgtgtttcaagggtactcaaaaaaacaaaactgaaaatgCCAAAC
TTTCGCACTACAAACGAtgcatttcattgtttttattcttGTTCAGTTAT
TACTTTATTTCATCCATTAAATTAACCTTTtgttttgtaaatttattttt
ctattatGGTTTTATACAACATAGCTTTTTTTTACGATTGAGGAATACTA
CTTTAAGTCATGTAATTATTTGTAATTTTGTCTGAAAATTTTATATTAGA
TAAATTTAATTTACGAAAATCTTTAAGAATacaaaaaattaagtattttc
actaaataacttttaattaaccttttgttttataaatttatttttctatt
atGGTTTTTATACAACAGTTTCTTTTTTACGATTGAGGAATACTACTTTA
AGTCATGTAATTATTTGTAATTTTGtcttaaaattttatattaGATAAAT
TTAATTTACGAAAATCTTTAAGAATacaaaaaattaagtattttCACTAA
ATAACT
Run BLAST on NCBI

transcript from alignment at sc0000007:1414730..1417874-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001268 ID=TCONS_00001268|Name=TCONS_00001268|organism=Clytia hemisphaerica|type=transcript|length=3145bp|location=Sequence derived from alignment at sc0000007:1414730..1417874- (Clytia hemisphaerica)
TTTAGATCTCGGGAAAGTTCACTTTAATAAAGAGAGAAACTTTTTTGTGG
CGCACCCAGTAGGAAATTTTCAGTTTTCGGTTTTTAGTTATATAGCTAAG
TAAGTCGGCTAAGTATTCTTTCTAAATCGTTATTTTTAGAGAATCATGTG
GTGAAAAAACCATTAAACGTTTGGTGGAAGACGCTCATAGATATGGAATT
GAAAAGGTGCATTGCTACGATGAACCCTTGTAAGAATAATTTATTTTTTA
AGGATTGAGATTTTTAGAAAAGTTTTTCAGAATATAAAAAACTAATTTTA
TTCATCTGAGAACAAGCCATTCTCCAAAACCTTTTATTGAAATGTTCTCT
CTACTTGCGTTTGTTTGTTGATTAGCATTCTGGGTCCTCTTTAGGAGGGT
GAACTGTATTAAAGTTATTTTTGTGCACATCCGATAATACTTTTAATAGT
CACCTTTTTTATCTACCCTTGAAAATATGGAGAAAAAAACACTGCTTCAT
TTTCTCGTAGGATGGTAAAAAGTGTATTATGTGCGAAATACCCAGATGCT
AGAGAGTGCCAGCCGGTCAACGCAAGTAAAGTCGAAAGGTATTGTTTTCT
TTCCTTCATTCTTTATCTTTATTGTTTTTTCTTCGAAAATTTTCTCCCGG
CAAAGATGTTTCTTGAAAAACAGGAAGATATTAGGCTACGTCATATCTTC
CATCATTTCGAGCGTAAAACTCCAACTCTTTCAGATATGAGCACTGCTCT
TGTTTTGAATATTTAATTTCTCCGAATACATCACATGTGCACTGAGGTTT
TGATGAAANGCACTTTTTGAAAGTTACTTTTTAAATCAAGCGAGCATAAC
TTTTGATCTAATAAACCAAATTTAATAAATGATCCATCAAAATTAATCTT
CCTTCTTTACGATGAAAAAAGATTCGTTCTTTCAAAAATTTTAGATCTCG
GGAAAGTTCACTTTAATAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTA
GGAAATTTTCAGTTTTCGGTTTTAGTTATATAGCTAAGTAAGTCGGCTAA
GTATTCTTTCTAAATCTTTATTTTTAGAGAATCATGTGGTGAAAAAACCA
TTAAACGTTTGGTGGAAGACGCTCATAGATATGGAATTGAAAAGGTGCAT
TGCTACGATGAACCCTTGTAAGAATAATTTATTTTTTAAGGATTGAGATT
TTTAGAAAAGTTTTTCAGAATATAAAAAACTAATTTTATTCATCTGAGAA
CAAGCCATTCTCCAAAACCTTTTATTGAAATGTTCTCCCTACTTGCGTTT
GTTTGTTGATTAGCATTCTGGGTCCTCTTTAGGAGGGTGAACTGTATTAA
AGTTATTTTTGTGCACATCCGATAATACTTTTAATAGTCACCTTTTTTAT
CTACCCTTGAAAATATGGAGAAAAAAACACTGCTTCATTTTCTCGTAGGA
TGGTAAAAAGTGTATTATGTGCGAAATACCCAGATGCTAGAGAGTGCCAG
CCGGTCAACGCAAGTAAAGTCGAAAGGTATTGTTTTCTTTCCTTCATTCT
TTATCTTTATTGTTTTTTCTTCGAAAATTTTCTCCCGGCAAAGATGTTTC
TTGAAAAAACAGGAAGATATGAGATAAATCTTTCACCAAAAATTTGATTA
TGGTCTTGTTGTTCCAAATCAAAGTTTTTTTTATTTGAAACCCTTTTGTC
TCATTATCTTTTCCTTGGGCGAAAGTAAACGCTCTTGATATTCCTTCTTC
AGAACATTGGTTTTTTAAATAAAGCCAATAGAAATCTTAACACGCCAGAA
ATTGATAATTGAATATAACTGAATCTAAACAGAGAATAGAATTGAAGAGC
AAGAGTGGTTTTAGATTGGAGATAAAAAATATGAATTTGTAGATATTCAT
ACAGCTGCATAAGTTGTCATTGCACCTTGGAGAATAGATAACCATCTATT
TTAAATCACCTTTTTTTTAACATAATGGTTATCACAAAAAACCTCTGAAA
TTCGCTTGCCAAAAGTTTTTCTGCTCTAAATCCAAAAATACATTAAAACT
GATGAAAACTGTGTTGCTAATTTGATTCCCTTGGAAAATAAAACAATAAC
AAGATCTCTCTGCTTTTTCAAAAATTATTGGTGAATCTTGATCATTCTAT
ATAACAAAGCATCTGGTATTTACTCTAACCTCTTTTCAATTTACAGCTGG
AAAGAAGCGACCATAGCCCTGATTGCTGTTTCGTGTGTTTTATTCATCGC
TGTCATCCTTCTCCTCGTCTTGTACAATCGACGAAGAATGGATTCGTCTA
CCTACAAACGAGACATCGATACATAGAGACATCCATCCATCTTTGATATT
GGTTGATATTTGTTTTGTTGACGAACGGTTGAAATTACACCTGATTTTGA
ATGCGGGTGATGCCGGGGAATATAAAGCATACGTGGCTATAGATTGATCT
TCATTTGGTAGCACTATTACTGGCATTTTACAGAACCTTTTTTTAATCAT
CACAACCCCGCCTTAAAACATGCTATTCTTATAGGTTTAACGAACTAACG
TTATTAAATCAACTACCATTTGTCAAAGACTTTCTTTTTACGATTTTACG
TTTTTGAAAGAAAAATTACAACATGTTTTGAGGGGTTGTGTGTGTGTGTT
TCAAGGGTACTCAAAAAAACAAAACTGAAAATGCCAAACTTTCGCACTAC
AAACGATGCATTTCATTGTTTTTATTCTTGTTCAGTTATTACTTTATTTC
ATCCATTAAATTAACCTTTTGTTTTGTAAATTTATTTTTCTATTATGGTT
TTATACAACATAGCTTTTTTTTACGATTGAGGAATACTACTTTAAGTCAT
GTAATTATTTGTAATTTTGTCTGAAAATTTTATATTAGATAAATTTAATT
TACGAAAATCTTTAAGAATACAAAAAATTAAGTATTTTCACTAAATAACT
TTTAATTAACCTTTTGTTTTATAAATTTATTTTTCTATTATGGTTTTTAT
ACAACAGTTTCTTTTTTACGATTGAGGAATACTACTTTAAGTCATGTAAT
TATTTGTAATTTTGTCTTAAAATTTTATATTAGATAAATTTAATTTACGA
AAATCTTTAAGAATACAAAAAATTAAGTATTTTCACTAAATAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000672XLOC_000672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001268-exon-sc0000007-1575043694:1417669..1417874TCONS_00001268-exon-sc0000007-1575043694:1417669..1417874Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1575043694:1416708..1416730TCONS_00001268-exon-sc0000007-1575043694:1416708..1416730Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1575043694:1416349..1416426TCONS_00001268-exon-sc0000007-1575043694:1416349..1416426Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1575043694:1414730..1415678TCONS_00001268-exon-sc0000007-1575043694:1414730..1415678Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1510915933:1417669..1417874TCONS_00001268-exon-sc0000007-1510915933:1417669..1417874Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1510915933:1416708..1416730TCONS_00001268-exon-sc0000007-1510915933:1416708..1416730Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1510915933:1416349..1416426TCONS_00001268-exon-sc0000007-1510915933:1416349..1416426Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1510915933:1414730..1415678TCONS_00001268-exon-sc0000007-1510915933:1414730..1415678Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1491911889:1417669..1417874TCONS_00001268-exon-sc0000007-1491911889:1417669..1417874Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1491911889:1416708..1416730TCONS_00001268-exon-sc0000007-1491911889:1416708..1416730Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1491911889:1416349..1416426TCONS_00001268-exon-sc0000007-1491911889:1416349..1416426Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1491911889:1414730..1415678TCONS_00001268-exon-sc0000007-1491911889:1414730..1415678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1414730..1417874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32152	1.75117	0.690597	0.788248	13.6631	12.1689	11.1526	11.7052	17.5609	18.2151	21.7997	15.2555	33.5109	33.2568	64.3422	58.7248	37.9272	27.3501	42.1081	42.7816	19.6245	18.9845	20.6304	20.5928	23.8295	31.8198	19.8863	17.7025	32.9462	24.3706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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