TCONS_00001268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001268
Unique NameTCONS_00001268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001268 ID=TCONS_00001268|Name=TCONS_00001268|organism=Clytia hemisphaerica|type=transcript|length=1256bp
tttagatctcGGGAAAGTTCACTTtaataaagagagaaacttttttgtgg
cgcacccagtaggaaattttcagttttcgGTTTTTAGTTATATAGCTAAG
TAAGTCGGCTAAGTATTCTTTCTAAATCGTTATTTTTAGAGAATCATGTG
GTGAAAAAACCATTAAACGTTTGGTGGAAGACGCTCATAGATATGGAATT
GAAAAGGTGCATTGCTACGATGAACCCTTGATGGTAAAAAGTGTATTATG
TGCGAAATACCCAGATGCTAGAGAGTGCCAGCCGGTCAACGCAAGTAAAG
TCGAAAGCTGGAAAGAAGCGACCATAGCCCTGATTGCTGTTTCGTGTGTT
TTATTCATCGCTGTCATCCTTCTCCTCGTCTTGTACAATCGACGAAGAAT
GGATTCGTCTACCTACAAACGAGACATCGATACATAGAGACATCCATCCA
TCTTTGATAttggttgatatttgttttgttgacgAACGGTTGAAATTACA
CCTGATTTTGAATGCGGGTGATGCCGGGGAATATAAAGCATACGTGGCTA
TAGATTGATCTTCATTTGGTAGCACTATTACTGGCATTTTACAGAACCTT
TTTTTAATCATCACAACCCCGCCTTAAAACATGCTATTCTTATAGGTTTA
ACGAACTAACGTTATTAAATCAACTACCATTTGTCAAAGACTTTCTTTTT
ACGATTTTacgtttttgaaagaaaaattacaacaTGTTTTGAGGGgttgt
gtgtgtgtgtttcaagggtactcaaaaaaacaaaactgaaaatgCCAAAC
TTTCGCACTACAAACGAtgcatttcattgtttttattcttGTTCAGTTAT
TACTTTATTTCATCCATTAAATTAACCTTTtgttttgtaaatttattttt
ctattatGGTTTTATACAACATAGCTTTTTTTTACGATTGAGGAATACTA
CTTTAAGTCATGTAATTATTTGTAATTTTGTCTGAAAATTTTATATTAGA
TAAATTTAATTTACGAAAATCTTTAAGAATacaaaaaattaagtattttc
actaaataacttttaattaaccttttgttttataaatttatttttctatt
atGGTTTTTATACAACAGTTTCTTTTTTACGATTGAGGAATACTACTTTA
AGTCATGTAATTATTTGTAATTTTGtcttaaaattttatattaGATAAAT
TTAATTTACGAAAATCTTTAAGAATacaaaaaattaagtattttCACTAA
ATAACT
Run BLAST on NCBI

transcript from alignment at sc0000007:1414730..1417874-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001268 ID=TCONS_00001268|Name=TCONS_00001268|organism=Clytia hemisphaerica|type=transcript|length=3145bp|location=Sequence derived from alignment at sc0000007:1414730..1417874- (Clytia hemisphaerica)
TTTAGATCTCGGGAAAGTTCACTTTAATAAAGAGAGAAACTTTTTTGTGG CGCACCCAGTAGGAAATTTTCAGTTTTCGGTTTTTAGTTATATAGCTAAG TAAGTCGGCTAAGTATTCTTTCTAAATCGTTATTTTTAGAGAATCATGTG GTGAAAAAACCATTAAACGTTTGGTGGAAGACGCTCATAGATATGGAATT GAAAAGGTGCATTGCTACGATGAACCCTTGTAAGAATAATTTATTTTTTA AGGATTGAGATTTTTAGAAAAGTTTTTCAGAATATAAAAAACTAATTTTA TTCATCTGAGAACAAGCCATTCTCCAAAACCTTTTATTGAAATGTTCTCT CTACTTGCGTTTGTTTGTTGATTAGCATTCTGGGTCCTCTTTAGGAGGGT GAACTGTATTAAAGTTATTTTTGTGCACATCCGATAATACTTTTAATAGT CACCTTTTTTATCTACCCTTGAAAATATGGAGAAAAAAACACTGCTTCAT TTTCTCGTAGGATGGTAAAAAGTGTATTATGTGCGAAATACCCAGATGCT AGAGAGTGCCAGCCGGTCAACGCAAGTAAAGTCGAAAGGTATTGTTTTCT TTCCTTCATTCTTTATCTTTATTGTTTTTTCTTCGAAAATTTTCTCCCGG CAAAGATGTTTCTTGAAAAACAGGAAGATATTAGGCTACGTCATATCTTC CATCATTTCGAGCGTAAAACTCCAACTCTTTCAGATATGAGCACTGCTCT TGTTTTGAATATTTAATTTCTCCGAATACATCACATGTGCACTGAGGTTT TGATGAAANGCACTTTTTGAAAGTTACTTTTTAAATCAAGCGAGCATAAC TTTTGATCTAATAAACCAAATTTAATAAATGATCCATCAAAATTAATCTT CCTTCTTTACGATGAAAAAAGATTCGTTCTTTCAAAAATTTTAGATCTCG GGAAAGTTCACTTTAATAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTA GGAAATTTTCAGTTTTCGGTTTTAGTTATATAGCTAAGTAAGTCGGCTAA GTATTCTTTCTAAATCTTTATTTTTAGAGAATCATGTGGTGAAAAAACCA TTAAACGTTTGGTGGAAGACGCTCATAGATATGGAATTGAAAAGGTGCAT TGCTACGATGAACCCTTGTAAGAATAATTTATTTTTTAAGGATTGAGATT TTTAGAAAAGTTTTTCAGAATATAAAAAACTAATTTTATTCATCTGAGAA CAAGCCATTCTCCAAAACCTTTTATTGAAATGTTCTCCCTACTTGCGTTT GTTTGTTGATTAGCATTCTGGGTCCTCTTTAGGAGGGTGAACTGTATTAA AGTTATTTTTGTGCACATCCGATAATACTTTTAATAGTCACCTTTTTTAT CTACCCTTGAAAATATGGAGAAAAAAACACTGCTTCATTTTCTCGTAGGA TGGTAAAAAGTGTATTATGTGCGAAATACCCAGATGCTAGAGAGTGCCAG CCGGTCAACGCAAGTAAAGTCGAAAGGTATTGTTTTCTTTCCTTCATTCT TTATCTTTATTGTTTTTTCTTCGAAAATTTTCTCCCGGCAAAGATGTTTC TTGAAAAAACAGGAAGATATGAGATAAATCTTTCACCAAAAATTTGATTA TGGTCTTGTTGTTCCAAATCAAAGTTTTTTTTATTTGAAACCCTTTTGTC TCATTATCTTTTCCTTGGGCGAAAGTAAACGCTCTTGATATTCCTTCTTC AGAACATTGGTTTTTTAAATAAAGCCAATAGAAATCTTAACACGCCAGAA ATTGATAATTGAATATAACTGAATCTAAACAGAGAATAGAATTGAAGAGC AAGAGTGGTTTTAGATTGGAGATAAAAAATATGAATTTGTAGATATTCAT ACAGCTGCATAAGTTGTCATTGCACCTTGGAGAATAGATAACCATCTATT TTAAATCACCTTTTTTTTAACATAATGGTTATCACAAAAAACCTCTGAAA TTCGCTTGCCAAAAGTTTTTCTGCTCTAAATCCAAAAATACATTAAAACT GATGAAAACTGTGTTGCTAATTTGATTCCCTTGGAAAATAAAACAATAAC AAGATCTCTCTGCTTTTTCAAAAATTATTGGTGAATCTTGATCATTCTAT ATAACAAAGCATCTGGTATTTACTCTAACCTCTTTTCAATTTACAGCTGG AAAGAAGCGACCATAGCCCTGATTGCTGTTTCGTGTGTTTTATTCATCGC TGTCATCCTTCTCCTCGTCTTGTACAATCGACGAAGAATGGATTCGTCTA CCTACAAACGAGACATCGATACATAGAGACATCCATCCATCTTTGATATT GGTTGATATTTGTTTTGTTGACGAACGGTTGAAATTACACCTGATTTTGA ATGCGGGTGATGCCGGGGAATATAAAGCATACGTGGCTATAGATTGATCT TCATTTGGTAGCACTATTACTGGCATTTTACAGAACCTTTTTTTAATCAT CACAACCCCGCCTTAAAACATGCTATTCTTATAGGTTTAACGAACTAACG TTATTAAATCAACTACCATTTGTCAAAGACTTTCTTTTTACGATTTTACG TTTTTGAAAGAAAAATTACAACATGTTTTGAGGGGTTGTGTGTGTGTGTT TCAAGGGTACTCAAAAAAACAAAACTGAAAATGCCAAACTTTCGCACTAC AAACGATGCATTTCATTGTTTTTATTCTTGTTCAGTTATTACTTTATTTC ATCCATTAAATTAACCTTTTGTTTTGTAAATTTATTTTTCTATTATGGTT TTATACAACATAGCTTTTTTTTACGATTGAGGAATACTACTTTAAGTCAT GTAATTATTTGTAATTTTGTCTGAAAATTTTATATTAGATAAATTTAATT TACGAAAATCTTTAAGAATACAAAAAATTAAGTATTTTCACTAAATAACT TTTAATTAACCTTTTGTTTTATAAATTTATTTTTCTATTATGGTTTTTAT ACAACAGTTTCTTTTTTACGATTGAGGAATACTACTTTAAGTCATGTAAT TATTTGTAATTTTGTCTTAAAATTTTATATTAGATAAATTTAATTTACGA AAATCTTTAAGAATACAAAAAATTAAGTATTTTCACTAAATAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000672XLOC_000672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001268-exon-sc0000007-1575043694:1417669..1417874TCONS_00001268-exon-sc0000007-1575043694:1417669..1417874Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1575043694:1416708..1416730TCONS_00001268-exon-sc0000007-1575043694:1416708..1416730Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1575043694:1416349..1416426TCONS_00001268-exon-sc0000007-1575043694:1416349..1416426Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1575043694:1414730..1415678TCONS_00001268-exon-sc0000007-1575043694:1414730..1415678Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1510915933:1417669..1417874TCONS_00001268-exon-sc0000007-1510915933:1417669..1417874Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1510915933:1416708..1416730TCONS_00001268-exon-sc0000007-1510915933:1416708..1416730Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1510915933:1416349..1416426TCONS_00001268-exon-sc0000007-1510915933:1416349..1416426Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1510915933:1414730..1415678TCONS_00001268-exon-sc0000007-1510915933:1414730..1415678Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1491911889:1417669..1417874TCONS_00001268-exon-sc0000007-1491911889:1417669..1417874Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1491911889:1416708..1416730TCONS_00001268-exon-sc0000007-1491911889:1416708..1416730Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1491911889:1416349..1416426TCONS_00001268-exon-sc0000007-1491911889:1416349..1416426Clytia hemisphaericaexon
TCONS_00001268-exon-sc0000007-1491911889:1414730..1415678TCONS_00001268-exon-sc0000007-1491911889:1414730..1415678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1414730..1417874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32152 1.75117 0.690597 0.788248 13.6631 12.1689 11.1526 11.7052 17.5609 18.2151 21.7997 15.2555 33.5109 33.2568 64.3422 58.7248 37.9272 27.3501 42.1081 42.7816 19.6245 18.9845 20.6304 20.5928 23.8295 31.8198 19.8863 17.7025 32.9462 24.3706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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