TCONS_00001216 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001216
Unique Name	TCONS_00001216
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1634

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000007:1099135..1107089-
coding sequence from alignment at sc0000007:1099135..1107089-

transcript sequence

>TCONS_00001216 ID=TCONS_00001216|Name=TCONS_00001216|organism=Clytia hemisphaerica|type=transcript|length=1634bp
CTGATCTCCCTCCTTCTTattctacacaatagacagctccaggcttttag
gccttactctcaaagagtaggagtttttgaaaaaacgaaggaagatatgg
aCGTAGCCTACCTCCTTCTTAATCTAAGACTGTAGTAGGATAACCAATAG
AAAATTCCTTACCATGTCATGTAAATTCCAATATTCCTGCCACGCTTAAC
AGCATAAAATCCACCTCCTTTACTACGAGCCATAAAGGAAGAACAAAGAA
GGTCGAAAATCTTATTGAAGAAGGTTCGATTCATAAgagaattgaaaaat
aattttttttgatacgATATAGACACGCGTGAGGAGCATGGTAGCCatat
ttattattgtttttgtcTCGCTTTGCCAAACTTTCGAACCTACCTAAAAA
GCTGTAATCGAGACAAACCAGACTCGCTCAACTTTCTACAAGGACATTCA
AAATGTCTTTTTAAAGTCGATACTAAGTGGAAGGCTTATTGCCAAGACCC
AGTCATGTTCGGCAAAGTCGTGAAACCAAACAATGGTACACCAGATGAGT
TAGAGAAATCCATTGGAGAAGCTCTTCTTGACTTGGAGGTCAATTCTGAC
CTCAAAACACAACTCCGAGAGTTATATATTACTGGTGCCAAAGAATTGGA
CGTTGGGGACAAAAAGAAATGTCTCATCATCTTTGTACCTGTTCCATTAC
TGAAGCAATTTCAAAAGATCCAGGTTCGATTAGTCCGTGAATTGGAAAAG
AAATTCTCTGGAAAACATGTTGTAGTTGTTGCTCAAagACGTATTCTTCC
AAAACCAACAAGAAAAACCAGATCTCAGAAACAAATGAGGCCAAGAAGTC
GCACTTTGACTGCGGTACATGATTCAATCCTTGAAGATTTAGTTTACCCA
TCAGAAATTGTCGGTAAAAGCGTACGTGTCAAGTTGGATGCCTCCAGATT
GGTCAAAGTTGTTTTAGAAAAAGCCCAACAAACTAATGTTGAACACAAGC
TCGATACATTTGCTGCGGTTTACAAGAGGTTGACTGGTAAAGACACACAT
TTTAGTTTTGAATTATaaattaaaatgaagaaaaaatggaaaacaaacaa
actttcgTTTACATTTATTGTAGTGCCTATAGTTCACAAATCTACCAAAA
ATTGCCCTTTTCGACctccggaggcggtttctttcatagtggtacgctaa
tctcgttttgccttcaCTCATTACtttttgtctaccatttactttcgttt
ttctggacctaccccggtggaggtcatataaattaacctctgttcgttcg
ttcgttaccaacttttctcgagattggctcattagttttttctgattttt
tgcacaaagatgtgtaactataaaccctcaaatgtgacggagcccgattt
tcgaagaagattcttttccggccgaaaatgccggaaaaccgaatttttgg
cattttctcaagatttcatcattagttttttctgattttttgcagaaagc
aaaacttggccgagtctgatttttgagaaaaaatattttctggtcgaaaa
tgccggaaaaccgaatttttggcattttctcaagatttcatcattagttt
tttctgattttttgcagaaagcaaaacttggccg

Run BLAST on NCBI

protein sequence of TCONS_00001216-protein

>TCONS_00001216-protein ID=TCONS_00001216-protein|Name=TCONS_00001216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MFGKVVKPNNGTPDELEKSIGEALLDLEVNSDLKTQLRELYITGAKELDV
GDKKKCLIIFVPVPLLKQFQKIQVRLVRELEKKFSGKHVVVVAQRRILPK
PTRKTRSQKQMRPRSRTLTAVHDSILEDLVYPSEIVGKSVRVKLDASRLV
KVVLEKAQQTNVEHKLDTFAAVYKRLTGKDTHFSFEL

Run BLAST on NCBI

transcript from alignment at sc0000007:1099135..1107089-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001216 ID=TCONS_00001216|Name=TCONS_00001216|organism=Clytia hemisphaerica|type=transcript|length=7955bp|location=Sequence derived from alignment at sc0000007:1099135..1107089- (Clytia hemisphaerica)
CTGATCTCCCTCCTTCTTATTCTACACAATAGACAGCTCCAGGCTTTTAG
GCCTTACTCTCAAAGAGTAGGAGTTTTTGAAAAAACGAAGGAAGATATGG
ACGTAGCCTACCTCCTTCTTAATCTAAGACTGTAGTAGGATAACCAATAG
AAAATTCCTTACCATGTCATGTAAATTCCAATATTCCTGCCACGCTTAAC
AGCATAAAATCCACCTCCTTTACTACGAGCCATAAAGGAAGAACAAAGAA
GGTCGAAAATCTTATTGAAGAAGGTTCGATTCATAAGAGAATTGAAAAAT
AATTTTTTTTGATACGATATAGACACGCGTGAGGAGCATGGTAGCCATAT
TTATTATTGTTTTTGTCTCGCTTTGCCAAACTTTCGAACCTACCTAAAAA
GCTGTAATCGAGACAAACCAGACTCGCTCAACTTTCTACAAGGACATTCA
AAATGTCTTTTTAAAGTCGATACTAAGTGGAAGGCTTATTGCCAAGGTAC
AACTTTTTGGAAGCCATTTATCACTTATTCTTGGCCGTATTTCGCAAATC
AATGGTTCAACTAACTTTCCTAAAATATTGAATTACCAGATTTTCAAAGA
TTAAAAGAAGATGCCATCAGTGTTTTACTCATTTTGCTAGAATACGACAG
AGTAATTTGTTGGTAAAATTTACTAAAGTCCCGCTATTTCGCTCGTTTTA
GACCCAGTCATGTTCGGCAAAGTCGTGAAACCAAACAATGGTACACCAGA
TGAGTTAGAGAAATCCATTGGAGAAGCTCTTCTTGACTTGGAGGTCAATT
CTGACCTCAAAACACAACTCCGAGAGTTATATATTACTGGTGCCAAAGAA
TTGGACGTTGGGGACAAAAAGAAATGTCTCATCATCTTTGTACCTGTTCC
ATTACTGAAGCAATTTCAAAAGATCCAGGTACTGATTTGGAAGTTTTGGT
TGTTTTGTTGATAATTCTGGATGAATTCTGGTGTCAGTCCGGTGTTGCAT
ACAGGGAATTTTGGACGCCGGACATTTATTAAACAAAAAATTAAGAAACA
CTGGACGCACCGGACTGGTCATGTCCAGTGTTTTGATTGTCCGGTGGAAA
AAAATATCCTTTAGGTGGCAATCACAAATATCTTCCTTTCGCGTCGCCCG
ACCGACTCTCAAAAATTGAGTAGAATTGAGTCGGCGAGTCGGTAAATGTG
TCTGACTTTTTCTGTCAATGACCTTTCCTTCGTTCAAAAATTTTATTATT
GCCGATTTTTTGCGAGCGATTTCTAGCGCATTCGCAGCATTTTGACTTNN
CTACATGCGCCATTTTGGGGTCGGAGGTCACAGTGTTCAAAGGTCATAAT
TTTAAACCACCCATTACACGCGGTTGTTTTGGATGCTGGCCGGCTGGCAG
TTTCCTACAGGACTCCAAAAATGGATGGAAAAATGGAAACCCGAAATTTT
TTACGACCGACCGACCGACTCACTTTTTAGACCCAACGAGGACGCGAAAT
GAAGACATTTGTGATTGCCGCCTTATCGACACCGGACATCCGACTTCCTT
AAGTCCGCTGTAGAGATTGTCTAGTGGTAAAAAAATTCTCATTTTACACC
GGACTTTTGCGGTCCGGTGTGCGTCGGCAGGGTCCTGTAAAGCTCTGAAG
GCGCTTGAAAATTATATATCTGAGGAAAATAGATAAATCTTGTTGTGCAT
TAAAAAGTCAAATACTAATACAGTGCCCTATTCACAAGCATAATCACGCA
ACTTTGATGTCATTTAGTCTTTTAGAAAAACATAGTCCTTATGATTTTGA
GATTGAATATTTGTCAGATTGTTATGTTTTCACACATCCCTTTAGAGCTT
CAGCGTGGTGTGCAGAAAACAATCACAATCTGATTTCAGGTTAATAACTG
ACCAATCAAAGCAGCAAAATTCAAAACAAATGATCTACGACTCTACCATT
TTTGTTTTGATTTAACTTTGTATTTTAATGACCAGCCAGTTCATTCATTT
GAGGACTGTGCATGTTAGCCTCCTCTAATGCAAGTTACCCGATCTCAGGG
TATTTTGTTCAATTTGTGTTGGAAACAGAAAAGATATTGATCTGAAAACT
GTTTGCTAAGGCGAGGGGAATTTGATCTTCTGTTTACCGTCTAGTTTCAA
AAAATATTTGATGCGGCAAAACTTCATTATTCCTACCTGGTGCTTCCAAT
CTCCAACGAAGTTGAATTCCACCATGAAATAGAGCTGCTTTCACTTTCGG
AATCAAAATGACATGCGCGAAAACTGAAACCCGTTCAAGACGCATCTAAA
ATGCAAATTTCTAAAACCCCCATGACGCCGTCCACTGCTTAAAAAAATGC
CTGCCCCATTCGCGGACGTGATTGGAACCATGTTTTTTACTCGAGGCGCA
CATTTTGTTAGCGAAGATGTTATTTTTGATTCACTTTGAGTGTTTTGGAT
AGCTTAGCACAGGAAAAGAAAAAATAATGAGTTTTTAAGAAATGATGAAC
TTTTTTCAGCAGCGGCTCAAGAGCATGCGAGCGGTCGACGGTAAACAGAA
CATCAAATTCCCATCGCCTAACCTATGCTATCCAGTGCTATCTTTACTTT
GGAGTTACAGCTCAATATTTTGAAGGAGAAGTATCATTGGTTGCTCGTTT
TACATCTTGCTTGTTAGATGATGGCAATGAAATTCATTCACGTCTTTTAG
CTGAGTCCTACAGATGTCACCTTGAGGGAACTTATTCTGGCGAAATTGAC
GAGTGAATTCAAAATTTGCCAAATTTAGTTCCCATCATAATTAATTTTTT
AGGTCATTCACCAAAATAAGTTTCTCACTAAAATTAAAAATTTTAGTATT
TTGCCTAAACACGTGCGTTTGCGTAGGGTAAAATTGCGAAATGCGAAAAT
CAATATTGGCAAATTTTTTTTGAAAAATGACCCTACAAGATTTGACTATA
TCTTTTTATTCCATGAGGAGATTACTTTCAAATAAAAAATATATTGACAA
TGAATGGGTAAGCTTTCTAGAAATCCAAGCATAAATTGCATAGTTTTTAA
CAAAAATAGAACTTTAGGATAAGAAACAGTCAAAAACCAGCTTTTTCCAA
TTTTCTTCGAGTTACAGGAATTAATTCCTTGTTTGTTTTGATCTGAAATT
TTCAGTAGGGGTGGCCAACATAGTTCCCTTGCTAATATCAGGGGGGGCCG
AGCCGCGGTAAGAGAATTAAAGTTTCTAAGTAAAATCTTAATTATCACCC
AAAAAAGTGCCTTTTTTGTCCATATCTTTTGAATAGATAGTCCCAGCCTT
ATCCCTCCTTCAGTGAAGCTTCCTATACCTTTTGTCCTTCAGAAAAACCA
AAAATATTGGCCTTAATTGCTTACTTTCAGTTCCTGTAGCCAGTAGTGTG
ACCCCCTGTATTTCTATTTTATTCTGCGCGGGTTTTTCAATAGAGATGTC
ACATGACTCAAAATACCGCAGTCTTATTGGACTAGAGAAAGCGAAAGTGA
AATCACGCAATCTGATTGGATGAAAAAAAGACCATGGGAACTGGAACCAA
AAATAATTCTCAATCTAAAACACTGCTTAGTCGGGGTTGAGCAAGGTATC
AATAGCCAGAAATAGCACTCCAGACCTGCATGCTCCACGTCCATAACAGG
ATGAAAACACCCGAAAGGTTGTAAATTCTGGTTGATTTTAAGGTTTTATC
TTATCTTATCTCATTTACTTTAATTAGTAGAGGCTTCTTCAATGTTTGGG
GAAGGTAAGTCTGTAAAAGTTATTTGTTTTTCGGTGGAAAAAAGTGTTTA
AAAAAGCATTTTTGGTGCTCCAGATTTATTTTGTCTTTGCAAATTTTCGC
GTTCCCAAACCAAACGCACGCGTAAATAACTTCTTGAGTTCACAAAAAAG
CTTCAAGTAAGTCTAAATAGAACATATTTGCGCTAAAATAAGTTCTAGCC
AAAATTTAAAAAAATTGTTGATTCACCATTAGGAGTCAATTGTACATTAA
TAACTAACATCATTCTGCAGATATGATCTGGGTAGGTGTTGAATAGTGTG
ACACCACAGAGATTTAGTGAAAATATTGATTTTCAGACTATCATTTTTTT
TACTACTAAGTACTATTAAAAGGGTTAAGTAAGTAAAAATTTTGGTCTGA
AGTTCTTTTATCGTTTTATGACAAAATCAAAATTATCGACTGGATAAAGG
GAGCACTCCAACGTCTATAAGCAATTTGTCAAATGAAGATTTGAAGTGTT
TGAGAAATAGTTTGGAAAAATCAATCTTGTCCAGTCTTGTCTAATTTTCT
TAAGTCTCTAGCCAGTTTGACCATCAATGTCCGCTAATTAGGGAGGAAAA
ACTAGGTTTTTGGTCATTTCGTGCAAGACTGTTTACTAATTGAGTTTCTG
CATTTGAACTTTTTTATGAGGATTTGACTAAAAATGGCAGGGGAAAATAG
AACTGTTCATTAATTGGAGGTGTCTTTGAGATTTTACTGTAAATGAGATT
TAAAAGAGGCCATGACTCTGTAAGAGAATTTGTCCCGGTTACAACAGTGT
TCTCTAGATTGTTGACAGGTCACGTTGCAAATTCAAATGTCATATTTTCA
TAAAAGGGAGTCTTGAACACTCTAGAAACTTTGTAATAACTACTAAACAT
AATCTTATCTTAGGCAAAATATTTTTTTAAAGCATGTTTTAATCGCTGTT
GAGAAGCTTCGGTATTTCTCCTCAGAATAAGTAGCATGCAACATAAATTG
TTCAACTGCCTATGATTTTGTACATCGTATTACAAATTCTATAAGCGTGT
TGTTACATTATCTTTTCTCTGGAAGTGTTTTGTAAGTTTCAGCTCAAAGT
CATGTCCAGCTTTTGGTTACAACACTGCTAATTATTATCAGGCAATGTTT
TATTAAGTTTTCCATTGTTCTATTATAGGTTCGATTAGTCCGTGAATTGG
AAAAGAAATTCTCTGGAAAACATGTTGTAGTTGTTGCTCAAGTAAGTTTT
CATAAAAATTAAAACAATTTGATTATCTGCAACTTTTCAGGCACTAATTT
AGGCTTTTTTGTCTACACGATATACAGCTTTAGGTTTTACTCTTGACTTG
TGATCTAAAAGCTCTCCTAAAGGTTGAAATTAGTTATCCCCCACTAAGAA
TAGTAAAACTAGAGCTGAAGTTCTATTTTTGCAGATTTTTGATATGATTT
CTACTCAAAGAGTGGGATTTTTGCTTTAAGCAAGGAAGAAAGGACAAATC
AAATCTTGAGTCATGCAAGCAAAATTTAATTCCTTTCTTAACCTTAATAA
ATAAGTTGAAATTGTTACATGTGGTAACACTTAATGCATTCAATTATTTC
TTTTTTAGAGACGTATTCTTCCAAAACCAACAAGAAAAACCAGATCTCAG
AAACAAATGAGGCCAAGAAGGTAAAGACTGCCAATCTTTGTGTTTAATAC
TGTTTTAGAAAAAATTTAGTTTGTATATTAGTGTNTAAATCTTCGTGTTT
AGTACTGTTTTAGAAAAATTTAGTTTGTATATTAGTGTACAGAATTTAGC
TGAAATTGGATTGAAAAAAACTTTCATGACAAATTTAATTTGTTCTATGG
GAAGACCTTCAGAAAAATATGGGTCACGACCTAAACGATTTGACATTTTG
TTTTTTCGTCTTTATCATTGAGTGAGTCATTTCCATAAATTTGTTCACTT
TTCTAACTTTTTTTAAATATCTGCAAAAAACTTCAAGTCCGTTCTTCAGC
TTTGCAATTTCAAAATTAGTTTTTTCCGATTTTGGAAAAAAACAGGTGTT
GTTGGGGAATAGATTAACTTGGTCTCGTCTAAATTGTCAACAAAAGAATC
AGGGATTGAATTATAAATTGAAAGTTTACTGGTTCATTTTTCCTTGCTAT
TGATATAGCATAAAATTCACTTTCTTGCATTTAGTCGCACTTTGACTGCG
GTACATGATTCAATCCTTGAAGATTTAGTTTACCCATCAGAAATTGTCGG
TAAAAGCGTACGTGTCAAGTTGGATGCCTCCAGATTGGTCAAAGTTGTTT
TAGAAAAAGCCCAACAAACTAATGTTGAACACAAGGTAAATATGTGATAG
AAATGTTTTAGATTTGGGTGGTAACTTCTTAAATAATTAAGTCAAAGTGC
TGTAGATGAAGCTGCCCAACAATTCGTCTCCGGTATTGCTCAGGTGTTAC
TGGTGATGAATTATATTGCCGCCCCAGTCAGATAGCTTTAAACTTGTGGT
GAGAGGCAATAAATTCTGAAGTACACAATACTGTGGGGTGCCAGATAATA
AAAACTTAGGGTTAGAACAATACACTGCAATATATTAAAATGAGGTTACC
TAGGGCAAAAAAAGACTTCTCTATTTTACAGCTGAAAACATTTTGGACAT
TTAAAGGGGACGTCTGGTCTGATTTTAGGTATTGTTTTTTTTTTAATTTT
TGGAAAAATTATTCCAGGGAGATTAAAATGAGCTATCTCACTTCAAGAGA
TTTTTTTCAATCACTTTCTATGGCCATTTAAAAAAGCCCTCTTTTTCAAA
ATTTATATCGTAGCTTGTGTGATATGTTTTCTATGTTCTTTCAAGTAAAC
AAGATTAACTCCTCTTTCTGTGCAGCTGGCATTTTTATAAGAAAATTTTA
AGTAAGTCAGAGATGTGCAAGAGCNATCTTGTCATGCCTTTCAATAATGA
TGAATTCTTTTGCCGCCCCAGTCTTACATTTTATGGTGACAGGCAATCGT
TCTGACAATTGCAAGGTTGATACAATGAATCAGATTTCATTGCAAGATCT
TTTTTCTTGCTATGATAAATTCTATTGCCACCCAGACTTTATTTATGGTG
ACAGGCAATCGTTCTGAGTCCTTTGCTTTGTTTTTAACTAGGGAGGGGTC
TTACAAGAAACTTCTTGTAGTCTTTGCCCGATGATGAATCGTATTGCCGC
CCCAGTCTTACATTTTATGGTGACAGGCAATCGTTCTGAGTCCTTTGCTT
TGTTTTTAACTAGGGAGGGGTCTTACGAGAAACTTCTTGCAGTCTTTGCC
CGATGATGAATTGTATTGCCGCCCCAGTCTTACATTTTATGGTGACAGGC
AATCGCTCTGAGTCTTATGCTTTGTTCTTCAACCAGGGGAGGGGTTGGTT
TTGCGAGATAATTCTTGCAGTCTTTGCCCGATGATGAATCGTATTGCCGC
CCCAGTCTTACATTTTATGGTGACAGGCAATCGTTCTGAGTCATTAAATC
CACATTTTCGGAACCAAATGAATTTGTCAGTGTGAATATGTTAAAAACAT
GCTATGTCTTTTTGTTTTAGCTCGATACATTTGCTGCGGTTTACAAGAGG
TTGACTGGTAAAGACACACATTTTAGTTTTGAATTATAAATTAAAATGAA
GAAAAAATGGAAAACAAACAAACTTTCGTTTACATTTATTGTAGTGCCTA
TAGTTCACAAATCTACCAAAAATTGCCCTTTTCGACCTCCGGAGGCGGTT
TCTTTCATAGTGGTACGCTAATCTCGTTTTGCCTTCACTCATTACTTTTT
GTCTACCATTTACTTTCGTTTTTCTGGACCTACCCCGGTGGAGGTCATAT
AAATTAACCTCTGTTCGTTCGTTCGTTACCAACTTTTCTCGAGATTGGCT
CATTAGTTTTTTCTGATTTTTTGCACAAAGATGTGTAACTATAAACCCTC
AAATGTGACGGAGCCCGATTTTCGAAGAAGATTCTTTTCCGGCCGAAAAT
GCCGGAAAACCGAATTTTTGGCATTTTCTCAAGATTTCATCATTAGTTTT
TTCTGATTTTTTGCAGAAAGCAAAACTTGGCCGAGTCTGATTTTTGAGAA
AAAATATTTTCTGGTCGAAAATGCCGGAAAACCGAATTTTTGGCATTTTC
TCAAGATTTCATCATTAGTTTTTTCTGATTTTTTGCAGAAAGCAAAACTT
GGCCG

Coding sequence (CDS) from alignment at sc0000007:1099135..1107089-

>TCONS_00001216 ID=TCONS_00001216|Name=TCONS_00001216|organism=Clytia hemisphaerica|type=CDS|length=2820bp|location=Sequence derived from alignment at sc0000007:1099135..1107089- (Clytia hemisphaerica)
CTCGATACATTTGCTGCGGTTTACAAGAGGTTGACTGGTAAAGACACACA
TTTTAGTTTTGAATTATAATCGCACTTTGACTGCGGTACATGATTCAATC
CTTGAAGATTTAGTTTACCCATCAGAAATTGTCGGTAAAAGCGTACGTGT
CAAGTTGGATGCCTCCAGATTGGTCAAAGTTGTTTTAGAAAAAGCCCAAC
AAACTAATGTTGAACACAAGAGACGTATTCTTCCAAAACCAACAAGAAAA
ACCAGATCTCAGAAACAAATGAGGCCAAGAAGGTTCGATTAGTCCGTGAA
TTGGAAAAGAAATTCTCTGGAAAACATGTTGTAGTTGTTGCTCAAATGTT
CGGCAAAGTCGTGAAACCAAACAATGGTACACCAGATGAGTTAGAGAAAT
CCATTGGAGAAGCTCTTCTTGACTTGGAGGTCAATTCTGACCTCAAAACA
CAACTCCGAGAGTTATATATTACTGGTGCCAAAGAATTGGACGTTGGGGA
CAAAAAGAAATGTCTCATCATCTTTGTACCTGTTCCATTACTGAAGCAAT
TTCAAAAGATCCAGCTCGATACATTTGCTGCGGTTTACAAGAGGTTGACT
GGTAAAGACACACATTTTAGTTTTGAATTATAATCGCACTTTGACTGCGG
TACATGATTCAATCCTTGAAGATTTAGTTTACCCATCAGAAATTGTCGGT
AAAAGCGTACGTGTCAAGTTGGATGCCTCCAGATTGGTCAAAGTTGTTTT
AGAAAAAGCCCAACAAACTAATGTTGAACACAAGAGACGTATTCTTCCAA
AACCAACAAGAAAAACCAGATCTCAGAAACAAATGAGGCCAAGAAGGTTC
GATTAGTCCGTGAATTGGAAAAGAAATTCTCTGGAAAACATGTTGTAGTT
GTTGCTCAAATGTTCGGCAAAGTCGTGAAACCAAACAATGGTACACCAGA
TGAGTTAGAGAAATCCATTGGAGAAGCTCTTCTTGACTTGGAGGTCAATT
CTGACCTCAAAACACAACTCCGAGAGTTATATATTACTGGTGCCAAAGAA
TTGGACGTTGGGGACAAAAAGAAATGTCTCATCATCTTTGTACCTGTTCC
ATTACTGAAGCAATTTCAAAAGATCCAGCTCGATACATTTGCTGCGGTTT
ACAAGAGGTTGACTGGTAAAGACACACATTTTAGTTTTGAATTATAATCG
CACTTTGACTGCGGTACATGATTCAATCCTTGAAGATTTAGTTTACCCAT
CAGAAATTGTCGGTAAAAGCGTACGTGTCAAGTTGGATGCCTCCAGATTG
GTCAAAGTTGTTTTAGAAAAAGCCCAACAAACTAATGTTGAACACAAGAG
ACGTATTCTTCCAAAACCAACAAGAAAAACCAGATCTCAGAAACAAATGA
GGCCAAGAAGGTTCGATTAGTCCGTGAATTGGAAAAGAAATTCTCTGGAA
AACATGTTGTAGTTGTTGCTCAAATGTTCGGCAAAGTCGTGAAACCAAAC
AATGGTACACCAGATGAGTTAGAGAAATCCATTGGAGAAGCTCTTCTTGA
CTTGGAGGTCAATTCTGACCTCAAAACACAACTCCGAGAGTTATATATTA
CTGGTGCCAAAGAATTGGACGTTGGGGACAAAAAGAAATGTCTCATCATC
TTTGTACCTGTTCCATTACTGAAGCAATTTCAAAAGATCCAGCTCGATAC
ATTTGCTGCGGTTTACAAGAGGTTGACTGGTAAAGACACACATTTTAGTT
TTGAATTATAATCGCACTTTGACTGCGGTACATGATTCAATCCTTGAAGA
TTTAGTTTACCCATCAGAAATTGTCGGTAAAAGCGTACGTGTCAAGTTGG
ATGCCTCCAGATTGGTCAAAGTTGTTTTAGAAAAAGCCCAACAAACTAAT
GTTGAACACAAGAGACGTATTCTTCCAAAACCAACAAGAAAAACCAGATC
TCAGAAACAAATGAGGCCAAGAAGGTTCGATTAGTCCGTGAATTGGAAAA
GAAATTCTCTGGAAAACATGTTGTAGTTGTTGCTCAAATGTTCGGCAAAG
TCGTGAAACCAAACAATGGTACACCAGATGAGTTAGAGAAATCCATTGGA
GAAGCTCTTCTTGACTTGGAGGTCAATTCTGACCTCAAAACACAACTCCG
AGAGTTATATATTACTGGTGCCAAAGAATTGGACGTTGGGGACAAAAAGA
AATGTCTCATCATCTTTGTACCTGTTCCATTACTGAAGCAATTTCAAAAG
ATCCAGCTCGATACATTTGCTGCGGTTTACAAGAGGTTGACTGGTAAAGA
CACACATTTTAGTTTTGAATTATAATCGCACTTTGACTGCGGTACATGAT
TCAATCCTTGAAGATTTAGTTTACCCATCAGAAATTGTCGGTAAAAGCGT
ACGTGTCAAGTTGGATGCCTCCAGATTGGTCAAAGTTGTTTTAGAAAAAG
CCCAACAAACTAATGTTGAACACAAGAGACGTATTCTTCCAAAACCAACA
AGAAAAACCAGATCTCAGAAACAAATGAGGCCAAGAAGGTTCGATTAGTC
CGTGAATTGGAAAAGAAATTCTCTGGAAAACATGTTGTAGTTGTTGCTCA
AATGTTCGGCAAAGTCGTGAAACCAAACAATGGTACACCAGATGAGTTAG
AGAAATCCATTGGAGAAGCTCTTCTTGACTTGGAGGTCAATTCTGACCTC
AAAACACAACTCCGAGAGTTATATATTACTGGTGCCAAAGAATTGGACGT
TGGGGACAAAAAGAAATGTCTCATCATCTTTGTACCTGTTCCATTACTGA
AGCAATTTCAAAAGATCCAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000659	XLOC_000659	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001216-protein	TCONS_00001216-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000007	supercontig	sc0000007:1099135..1107089 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
824.565	832.075	868.459	916.365	569.522	473.373	790.202	814.358	1334.27	1146.77	1329.48	1661.13	1842.56	1714.23	1789.01	1875.16	1710.81	1971.56	962.111	1142.67	2112.95	1992.11	1380.37	1329.11	1235.49	1256.54	1706.95	1682.15	1143.5	1152.86

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000554	Ribosomal_S7e

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Blast

[Close]

BLAST of TCONS_00001216 vs. Swiss-Prot (Human)
Match: RS7 (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 1.197e-89
Identity = 136/184 (73.91%), Postives = 158/184 (85.87%), Query Frame = 1

Query:  511 GKVVKPNNGTPDELEKSIGEALLDLEVNSDLKTQLRELYITGAKELDVGDKKKCLIIFVPVPLLKQFQKIQVRLVRELEKKFSGKHVVVVAQRRILPKPTRKTRSQ-KQMRPRSRTLTAVHDSILEDLVYPSEIVGKSVRVKLDASRLVKVVLEKAQQTNVEHKLDTFAAVYKRLTGKDTHFSF 1059
             K+VKPN   PDE E  I +ALL+LE+NSDLK QLREL IT AKE++VG  +K +IIFVPVP LK FQKIQVRLVRELEKKFSGKHVV +AQRRILPKPTRK+R++ KQ RPRSRTLTAVHD+ILEDLV+PSEIVGK +RVKLD SRL+KV L+KAQQ NVEHK++TF+ VYK+LTGKD +F F
Sbjct:    6 AKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEF 189

The following BLAST results are available for this feature:

BLAST of TCONS_00001216 vs. Swiss-Prot (Human)

BLAST of TCONS_00001216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RS7	1.197e-89	73.91	40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P...	[more]

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TCONS_00001216 (transcript) - C. hemisphaerica