TCONS_00001216-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001216-protein
Unique NameTCONS_00001216-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length187

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001216-protein ID=TCONS_00001216-protein|Name=TCONS_00001216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MFGKVVKPNNGTPDELEKSIGEALLDLEVNSDLKTQLRELYITGAKELDV
GDKKKCLIIFVPVPLLKQFQKIQVRLVRELEKKFSGKHVVVVAQRRILPK
PTRKTRSQKQMRPRSRTLTAVHDSILEDLVYPSEIVGKSVRVKLDASRLV
KVVLEKAQQTNVEHKLDTFAAVYKRLTGKDTHFSFEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000659XLOC_000659Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001216TCONS_00001216Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000554Ribosomal_S7e
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000554Ribosomal protein S7ePFAMPF01251Ribosomal_S7ecoord: 4..186
e-value: 3.6E-83
score: 277.7
IPR000554Ribosomal protein S7ePROSITEPS00948RIBOSOMAL_S7Ecoord: 75..88

Blast
[Close]
BLAST of TCONS_00001216-protein vs. Swiss-Prot (Human)
Match: RS7 (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 1.948e-96
Identity = 136/184 (73.91%), Postives = 158/184 (85.87%), Query Frame = 0 
Query:    3 GKVVKPNNGTPDELEKSIGEALLDLEVNSDLKTQLRELYITGAKELDVGDKKKCLIIFVPVPLLKQFQKIQVRLVRELEKKFSGKHVVVVAQRRILPKPTRKTRSQ-KQMRPRSRTLTAVHDSILEDLVYPSEIVGKSVRVKLDASRLVKVVLEKAQQTNVEHKLDTFAAVYKRLTGKDTHFSF 185
             K+VKPN   PDE E  I +ALL+LE+NSDLK QLREL IT AKE++VG  +K +IIFVPVP LK FQKIQVRLVRELEKKFSGKHVV +AQRRILPKPTRK+R++ KQ RPRSRTLTAVHD+ILEDLV+PSEIVGK +RVKLD SRL+KV L+KAQQ NVEHK++TF+ VYK+LTGKD +F F
Sbjct:    6 AKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEF 189
The following BLAST results are available for this feature:
BLAST of TCONS_00001216-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS71.948e-9673.9140S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P... [more]
back to top