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TCONS_00001216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001216
Unique NameTCONS_00001216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001216 ID=TCONS_00001216|Name=TCONS_00001216|organism=Clytia hemisphaerica|type=transcript|length=1634bp
CTGATCTCCCTCCTTCTTattctacacaatagacagctccaggcttttag
gccttactctcaaagagtaggagtttttgaaaaaacgaaggaagatatgg
aCGTAGCCTACCTCCTTCTTAATCTAAGACTGTAGTAGGATAACCAATAG
AAAATTCCTTACCATGTCATGTAAATTCCAATATTCCTGCCACGCTTAAC
AGCATAAAATCCACCTCCTTTACTACGAGCCATAAAGGAAGAACAAAGAA
GGTCGAAAATCTTATTGAAGAAGGTTCGATTCATAAgagaattgaaaaat
aattttttttgatacgATATAGACACGCGTGAGGAGCATGGTAGCCatat
ttattattgtttttgtcTCGCTTTGCCAAACTTTCGAACCTACCTAAAAA
GCTGTAATCGAGACAAACCAGACTCGCTCAACTTTCTACAAGGACATTCA
AAATGTCTTTTTAAAGTCGATACTAAGTGGAAGGCTTATTGCCAAGACCC
AGTCATGTTCGGCAAAGTCGTGAAACCAAACAATGGTACACCAGATGAGT
TAGAGAAATCCATTGGAGAAGCTCTTCTTGACTTGGAGGTCAATTCTGAC
CTCAAAACACAACTCCGAGAGTTATATATTACTGGTGCCAAAGAATTGGA
CGTTGGGGACAAAAAGAAATGTCTCATCATCTTTGTACCTGTTCCATTAC
TGAAGCAATTTCAAAAGATCCAGGTTCGATTAGTCCGTGAATTGGAAAAG
AAATTCTCTGGAAAACATGTTGTAGTTGTTGCTCAAagACGTATTCTTCC
AAAACCAACAAGAAAAACCAGATCTCAGAAACAAATGAGGCCAAGAAGTC
GCACTTTGACTGCGGTACATGATTCAATCCTTGAAGATTTAGTTTACCCA
TCAGAAATTGTCGGTAAAAGCGTACGTGTCAAGTTGGATGCCTCCAGATT
GGTCAAAGTTGTTTTAGAAAAAGCCCAACAAACTAATGTTGAACACAAGC
TCGATACATTTGCTGCGGTTTACAAGAGGTTGACTGGTAAAGACACACAT
TTTAGTTTTGAATTATaaattaaaatgaagaaaaaatggaaaacaaacaa
actttcgTTTACATTTATTGTAGTGCCTATAGTTCACAAATCTACCAAAA
ATTGCCCTTTTCGACctccggaggcggtttctttcatagtggtacgctaa
tctcgttttgccttcaCTCATTACtttttgtctaccatttactttcgttt
ttctggacctaccccggtggaggtcatataaattaacctctgttcgttcg
ttcgttaccaacttttctcgagattggctcattagttttttctgattttt
tgcacaaagatgtgtaactataaaccctcaaatgtgacggagcccgattt
tcgaagaagattcttttccggccgaaaatgccggaaaaccgaatttttgg
cattttctcaagatttcatcattagttttttctgattttttgcagaaagc
aaaacttggccgagtctgatttttgagaaaaaatattttctggtcgaaaa
tgccggaaaaccgaatttttggcattttctcaagatttcatcattagttt
tttctgattttttgcagaaagcaaaacttggccg
Run BLAST on NCBI

protein sequence of TCONS_00001216-protein

>TCONS_00001216-protein ID=TCONS_00001216-protein|Name=TCONS_00001216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MFGKVVKPNNGTPDELEKSIGEALLDLEVNSDLKTQLRELYITGAKELDV
GDKKKCLIIFVPVPLLKQFQKIQVRLVRELEKKFSGKHVVVVAQRRILPK
PTRKTRSQKQMRPRSRTLTAVHDSILEDLVYPSEIVGKSVRVKLDASRLV
KVVLEKAQQTNVEHKLDTFAAVYKRLTGKDTHFSFEL
Run BLAST on NCBI

transcript from alignment at sc0000007:1099135..1107089-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001216 ID=TCONS_00001216|Name=TCONS_00001216|organism=Clytia hemisphaerica|type=transcript|length=7955bp|location=Sequence derived from alignment at sc0000007:1099135..1107089- (Clytia hemisphaerica)
CTGATCTCCCTCCTTCTTATTCTACACAATAGACAGCTCCAGGCTTTTAG GCCTTACTCTCAAAGAGTAGGAGTTTTTGAAAAAACGAAGGAAGATATGG ACGTAGCCTACCTCCTTCTTAATCTAAGACTGTAGTAGGATAACCAATAG AAAATTCCTTACCATGTCATGTAAATTCCAATATTCCTGCCACGCTTAAC AGCATAAAATCCACCTCCTTTACTACGAGCCATAAAGGAAGAACAAAGAA GGTCGAAAATCTTATTGAAGAAGGTTCGATTCATAAGAGAATTGAAAAAT AATTTTTTTTGATACGATATAGACACGCGTGAGGAGCATGGTAGCCATAT TTATTATTGTTTTTGTCTCGCTTTGCCAAACTTTCGAACCTACCTAAAAA GCTGTAATCGAGACAAACCAGACTCGCTCAACTTTCTACAAGGACATTCA AAATGTCTTTTTAAAGTCGATACTAAGTGGAAGGCTTATTGCCAAGGTAC AACTTTTTGGAAGCCATTTATCACTTATTCTTGGCCGTATTTCGCAAATC AATGGTTCAACTAACTTTCCTAAAATATTGAATTACCAGATTTTCAAAGA TTAAAAGAAGATGCCATCAGTGTTTTACTCATTTTGCTAGAATACGACAG AGTAATTTGTTGGTAAAATTTACTAAAGTCCCGCTATTTCGCTCGTTTTA GACCCAGTCATGTTCGGCAAAGTCGTGAAACCAAACAATGGTACACCAGA TGAGTTAGAGAAATCCATTGGAGAAGCTCTTCTTGACTTGGAGGTCAATT CTGACCTCAAAACACAACTCCGAGAGTTATATATTACTGGTGCCAAAGAA TTGGACGTTGGGGACAAAAAGAAATGTCTCATCATCTTTGTACCTGTTCC ATTACTGAAGCAATTTCAAAAGATCCAGGTACTGATTTGGAAGTTTTGGT TGTTTTGTTGATAATTCTGGATGAATTCTGGTGTCAGTCCGGTGTTGCAT ACAGGGAATTTTGGACGCCGGACATTTATTAAACAAAAAATTAAGAAACA CTGGACGCACCGGACTGGTCATGTCCAGTGTTTTGATTGTCCGGTGGAAA AAAATATCCTTTAGGTGGCAATCACAAATATCTTCCTTTCGCGTCGCCCG ACCGACTCTCAAAAATTGAGTAGAATTGAGTCGGCGAGTCGGTAAATGTG TCTGACTTTTTCTGTCAATGACCTTTCCTTCGTTCAAAAATTTTATTATT GCCGATTTTTTGCGAGCGATTTCTAGCGCATTCGCAGCATTTTGACTTNN CTACATGCGCCATTTTGGGGTCGGAGGTCACAGTGTTCAAAGGTCATAAT TTTAAACCACCCATTACACGCGGTTGTTTTGGATGCTGGCCGGCTGGCAG TTTCCTACAGGACTCCAAAAATGGATGGAAAAATGGAAACCCGAAATTTT TTACGACCGACCGACCGACTCACTTTTTAGACCCAACGAGGACGCGAAAT GAAGACATTTGTGATTGCCGCCTTATCGACACCGGACATCCGACTTCCTT AAGTCCGCTGTAGAGATTGTCTAGTGGTAAAAAAATTCTCATTTTACACC GGACTTTTGCGGTCCGGTGTGCGTCGGCAGGGTCCTGTAAAGCTCTGAAG GCGCTTGAAAATTATATATCTGAGGAAAATAGATAAATCTTGTTGTGCAT TAAAAAGTCAAATACTAATACAGTGCCCTATTCACAAGCATAATCACGCA ACTTTGATGTCATTTAGTCTTTTAGAAAAACATAGTCCTTATGATTTTGA GATTGAATATTTGTCAGATTGTTATGTTTTCACACATCCCTTTAGAGCTT CAGCGTGGTGTGCAGAAAACAATCACAATCTGATTTCAGGTTAATAACTG ACCAATCAAAGCAGCAAAATTCAAAACAAATGATCTACGACTCTACCATT TTTGTTTTGATTTAACTTTGTATTTTAATGACCAGCCAGTTCATTCATTT GAGGACTGTGCATGTTAGCCTCCTCTAATGCAAGTTACCCGATCTCAGGG TATTTTGTTCAATTTGTGTTGGAAACAGAAAAGATATTGATCTGAAAACT GTTTGCTAAGGCGAGGGGAATTTGATCTTCTGTTTACCGTCTAGTTTCAA AAAATATTTGATGCGGCAAAACTTCATTATTCCTACCTGGTGCTTCCAAT CTCCAACGAAGTTGAATTCCACCATGAAATAGAGCTGCTTTCACTTTCGG AATCAAAATGACATGCGCGAAAACTGAAACCCGTTCAAGACGCATCTAAA ATGCAAATTTCTAAAACCCCCATGACGCCGTCCACTGCTTAAAAAAATGC CTGCCCCATTCGCGGACGTGATTGGAACCATGTTTTTTACTCGAGGCGCA CATTTTGTTAGCGAAGATGTTATTTTTGATTCACTTTGAGTGTTTTGGAT AGCTTAGCACAGGAAAAGAAAAAATAATGAGTTTTTAAGAAATGATGAAC TTTTTTCAGCAGCGGCTCAAGAGCATGCGAGCGGTCGACGGTAAACAGAA CATCAAATTCCCATCGCCTAACCTATGCTATCCAGTGCTATCTTTACTTT GGAGTTACAGCTCAATATTTTGAAGGAGAAGTATCATTGGTTGCTCGTTT TACATCTTGCTTGTTAGATGATGGCAATGAAATTCATTCACGTCTTTTAG CTGAGTCCTACAGATGTCACCTTGAGGGAACTTATTCTGGCGAAATTGAC GAGTGAATTCAAAATTTGCCAAATTTAGTTCCCATCATAATTAATTTTTT AGGTCATTCACCAAAATAAGTTTCTCACTAAAATTAAAAATTTTAGTATT TTGCCTAAACACGTGCGTTTGCGTAGGGTAAAATTGCGAAATGCGAAAAT CAATATTGGCAAATTTTTTTTGAAAAATGACCCTACAAGATTTGACTATA TCTTTTTATTCCATGAGGAGATTACTTTCAAATAAAAAATATATTGACAA TGAATGGGTAAGCTTTCTAGAAATCCAAGCATAAATTGCATAGTTTTTAA CAAAAATAGAACTTTAGGATAAGAAACAGTCAAAAACCAGCTTTTTCCAA TTTTCTTCGAGTTACAGGAATTAATTCCTTGTTTGTTTTGATCTGAAATT TTCAGTAGGGGTGGCCAACATAGTTCCCTTGCTAATATCAGGGGGGGCCG AGCCGCGGTAAGAGAATTAAAGTTTCTAAGTAAAATCTTAATTATCACCC AAAAAAGTGCCTTTTTTGTCCATATCTTTTGAATAGATAGTCCCAGCCTT ATCCCTCCTTCAGTGAAGCTTCCTATACCTTTTGTCCTTCAGAAAAACCA AAAATATTGGCCTTAATTGCTTACTTTCAGTTCCTGTAGCCAGTAGTGTG ACCCCCTGTATTTCTATTTTATTCTGCGCGGGTTTTTCAATAGAGATGTC ACATGACTCAAAATACCGCAGTCTTATTGGACTAGAGAAAGCGAAAGTGA AATCACGCAATCTGATTGGATGAAAAAAAGACCATGGGAACTGGAACCAA AAATAATTCTCAATCTAAAACACTGCTTAGTCGGGGTTGAGCAAGGTATC AATAGCCAGAAATAGCACTCCAGACCTGCATGCTCCACGTCCATAACAGG ATGAAAACACCCGAAAGGTTGTAAATTCTGGTTGATTTTAAGGTTTTATC TTATCTTATCTCATTTACTTTAATTAGTAGAGGCTTCTTCAATGTTTGGG GAAGGTAAGTCTGTAAAAGTTATTTGTTTTTCGGTGGAAAAAAGTGTTTA AAAAAGCATTTTTGGTGCTCCAGATTTATTTTGTCTTTGCAAATTTTCGC GTTCCCAAACCAAACGCACGCGTAAATAACTTCTTGAGTTCACAAAAAAG CTTCAAGTAAGTCTAAATAGAACATATTTGCGCTAAAATAAGTTCTAGCC AAAATTTAAAAAAATTGTTGATTCACCATTAGGAGTCAATTGTACATTAA TAACTAACATCATTCTGCAGATATGATCTGGGTAGGTGTTGAATAGTGTG ACACCACAGAGATTTAGTGAAAATATTGATTTTCAGACTATCATTTTTTT TACTACTAAGTACTATTAAAAGGGTTAAGTAAGTAAAAATTTTGGTCTGA AGTTCTTTTATCGTTTTATGACAAAATCAAAATTATCGACTGGATAAAGG GAGCACTCCAACGTCTATAAGCAATTTGTCAAATGAAGATTTGAAGTGTT TGAGAAATAGTTTGGAAAAATCAATCTTGTCCAGTCTTGTCTAATTTTCT TAAGTCTCTAGCCAGTTTGACCATCAATGTCCGCTAATTAGGGAGGAAAA ACTAGGTTTTTGGTCATTTCGTGCAAGACTGTTTACTAATTGAGTTTCTG CATTTGAACTTTTTTATGAGGATTTGACTAAAAATGGCAGGGGAAAATAG AACTGTTCATTAATTGGAGGTGTCTTTGAGATTTTACTGTAAATGAGATT TAAAAGAGGCCATGACTCTGTAAGAGAATTTGTCCCGGTTACAACAGTGT TCTCTAGATTGTTGACAGGTCACGTTGCAAATTCAAATGTCATATTTTCA TAAAAGGGAGTCTTGAACACTCTAGAAACTTTGTAATAACTACTAAACAT AATCTTATCTTAGGCAAAATATTTTTTTAAAGCATGTTTTAATCGCTGTT GAGAAGCTTCGGTATTTCTCCTCAGAATAAGTAGCATGCAACATAAATTG TTCAACTGCCTATGATTTTGTACATCGTATTACAAATTCTATAAGCGTGT TGTTACATTATCTTTTCTCTGGAAGTGTTTTGTAAGTTTCAGCTCAAAGT CATGTCCAGCTTTTGGTTACAACACTGCTAATTATTATCAGGCAATGTTT TATTAAGTTTTCCATTGTTCTATTATAGGTTCGATTAGTCCGTGAATTGG AAAAGAAATTCTCTGGAAAACATGTTGTAGTTGTTGCTCAAGTAAGTTTT CATAAAAATTAAAACAATTTGATTATCTGCAACTTTTCAGGCACTAATTT AGGCTTTTTTGTCTACACGATATACAGCTTTAGGTTTTACTCTTGACTTG TGATCTAAAAGCTCTCCTAAAGGTTGAAATTAGTTATCCCCCACTAAGAA TAGTAAAACTAGAGCTGAAGTTCTATTTTTGCAGATTTTTGATATGATTT CTACTCAAAGAGTGGGATTTTTGCTTTAAGCAAGGAAGAAAGGACAAATC AAATCTTGAGTCATGCAAGCAAAATTTAATTCCTTTCTTAACCTTAATAA ATAAGTTGAAATTGTTACATGTGGTAACACTTAATGCATTCAATTATTTC TTTTTTAGAGACGTATTCTTCCAAAACCAACAAGAAAAACCAGATCTCAG AAACAAATGAGGCCAAGAAGGTAAAGACTGCCAATCTTTGTGTTTAATAC TGTTTTAGAAAAAATTTAGTTTGTATATTAGTGTNTAAATCTTCGTGTTT AGTACTGTTTTAGAAAAATTTAGTTTGTATATTAGTGTACAGAATTTAGC TGAAATTGGATTGAAAAAAACTTTCATGACAAATTTAATTTGTTCTATGG GAAGACCTTCAGAAAAATATGGGTCACGACCTAAACGATTTGACATTTTG TTTTTTCGTCTTTATCATTGAGTGAGTCATTTCCATAAATTTGTTCACTT TTCTAACTTTTTTTAAATATCTGCAAAAAACTTCAAGTCCGTTCTTCAGC TTTGCAATTTCAAAATTAGTTTTTTCCGATTTTGGAAAAAAACAGGTGTT GTTGGGGAATAGATTAACTTGGTCTCGTCTAAATTGTCAACAAAAGAATC AGGGATTGAATTATAAATTGAAAGTTTACTGGTTCATTTTTCCTTGCTAT TGATATAGCATAAAATTCACTTTCTTGCATTTAGTCGCACTTTGACTGCG GTACATGATTCAATCCTTGAAGATTTAGTTTACCCATCAGAAATTGTCGG TAAAAGCGTACGTGTCAAGTTGGATGCCTCCAGATTGGTCAAAGTTGTTT TAGAAAAAGCCCAACAAACTAATGTTGAACACAAGGTAAATATGTGATAG AAATGTTTTAGATTTGGGTGGTAACTTCTTAAATAATTAAGTCAAAGTGC TGTAGATGAAGCTGCCCAACAATTCGTCTCCGGTATTGCTCAGGTGTTAC TGGTGATGAATTATATTGCCGCCCCAGTCAGATAGCTTTAAACTTGTGGT GAGAGGCAATAAATTCTGAAGTACACAATACTGTGGGGTGCCAGATAATA AAAACTTAGGGTTAGAACAATACACTGCAATATATTAAAATGAGGTTACC TAGGGCAAAAAAAGACTTCTCTATTTTACAGCTGAAAACATTTTGGACAT TTAAAGGGGACGTCTGGTCTGATTTTAGGTATTGTTTTTTTTTTAATTTT TGGAAAAATTATTCCAGGGAGATTAAAATGAGCTATCTCACTTCAAGAGA TTTTTTTCAATCACTTTCTATGGCCATTTAAAAAAGCCCTCTTTTTCAAA ATTTATATCGTAGCTTGTGTGATATGTTTTCTATGTTCTTTCAAGTAAAC AAGATTAACTCCTCTTTCTGTGCAGCTGGCATTTTTATAAGAAAATTTTA AGTAAGTCAGAGATGTGCAAGAGCNATCTTGTCATGCCTTTCAATAATGA TGAATTCTTTTGCCGCCCCAGTCTTACATTTTATGGTGACAGGCAATCGT TCTGACAATTGCAAGGTTGATACAATGAATCAGATTTCATTGCAAGATCT TTTTTCTTGCTATGATAAATTCTATTGCCACCCAGACTTTATTTATGGTG ACAGGCAATCGTTCTGAGTCCTTTGCTTTGTTTTTAACTAGGGAGGGGTC TTACAAGAAACTTCTTGTAGTCTTTGCCCGATGATGAATCGTATTGCCGC CCCAGTCTTACATTTTATGGTGACAGGCAATCGTTCTGAGTCCTTTGCTT TGTTTTTAACTAGGGAGGGGTCTTACGAGAAACTTCTTGCAGTCTTTGCC CGATGATGAATTGTATTGCCGCCCCAGTCTTACATTTTATGGTGACAGGC AATCGCTCTGAGTCTTATGCTTTGTTCTTCAACCAGGGGAGGGGTTGGTT TTGCGAGATAATTCTTGCAGTCTTTGCCCGATGATGAATCGTATTGCCGC CCCAGTCTTACATTTTATGGTGACAGGCAATCGTTCTGAGTCATTAAATC CACATTTTCGGAACCAAATGAATTTGTCAGTGTGAATATGTTAAAAACAT GCTATGTCTTTTTGTTTTAGCTCGATACATTTGCTGCGGTTTACAAGAGG TTGACTGGTAAAGACACACATTTTAGTTTTGAATTATAAATTAAAATGAA GAAAAAATGGAAAACAAACAAACTTTCGTTTACATTTATTGTAGTGCCTA TAGTTCACAAATCTACCAAAAATTGCCCTTTTCGACCTCCGGAGGCGGTT TCTTTCATAGTGGTACGCTAATCTCGTTTTGCCTTCACTCATTACTTTTT GTCTACCATTTACTTTCGTTTTTCTGGACCTACCCCGGTGGAGGTCATAT AAATTAACCTCTGTTCGTTCGTTCGTTACCAACTTTTCTCGAGATTGGCT CATTAGTTTTTTCTGATTTTTTGCACAAAGATGTGTAACTATAAACCCTC AAATGTGACGGAGCCCGATTTTCGAAGAAGATTCTTTTCCGGCCGAAAAT GCCGGAAAACCGAATTTTTGGCATTTTCTCAAGATTTCATCATTAGTTTT TTCTGATTTTTTGCAGAAAGCAAAACTTGGCCGAGTCTGATTTTTGAGAA AAAATATTTTCTGGTCGAAAATGCCGGAAAACCGAATTTTTGGCATTTTC TCAAGATTTCATCATTAGTTTTTTCTGATTTTTTGCAGAAAGCAAAACTT GGCCG

Coding sequence (CDS) from alignment at sc0000007:1099135..1107089-

>TCONS_00001216 ID=TCONS_00001216|Name=TCONS_00001216|organism=Clytia hemisphaerica|type=CDS|length=2820bp|location=Sequence derived from alignment at sc0000007:1099135..1107089- (Clytia hemisphaerica)
CTCGATACATTTGCTGCGGTTTACAAGAGGTTGACTGGTAAAGACACACA
TTTTAGTTTTGAATTATAATCGCACTTTGACTGCGGTACATGATTCAATC
CTTGAAGATTTAGTTTACCCATCAGAAATTGTCGGTAAAAGCGTACGTGT
CAAGTTGGATGCCTCCAGATTGGTCAAAGTTGTTTTAGAAAAAGCCCAAC
AAACTAATGTTGAACACAAGAGACGTATTCTTCCAAAACCAACAAGAAAA
ACCAGATCTCAGAAACAAATGAGGCCAAGAAGGTTCGATTAGTCCGTGAA
TTGGAAAAGAAATTCTCTGGAAAACATGTTGTAGTTGTTGCTCAAATGTT
CGGCAAAGTCGTGAAACCAAACAATGGTACACCAGATGAGTTAGAGAAAT
CCATTGGAGAAGCTCTTCTTGACTTGGAGGTCAATTCTGACCTCAAAACA
CAACTCCGAGAGTTATATATTACTGGTGCCAAAGAATTGGACGTTGGGGA
CAAAAAGAAATGTCTCATCATCTTTGTACCTGTTCCATTACTGAAGCAAT
TTCAAAAGATCCAGCTCGATACATTTGCTGCGGTTTACAAGAGGTTGACT
GGTAAAGACACACATTTTAGTTTTGAATTATAATCGCACTTTGACTGCGG
TACATGATTCAATCCTTGAAGATTTAGTTTACCCATCAGAAATTGTCGGT
AAAAGCGTACGTGTCAAGTTGGATGCCTCCAGATTGGTCAAAGTTGTTTT
AGAAAAAGCCCAACAAACTAATGTTGAACACAAGAGACGTATTCTTCCAA
AACCAACAAGAAAAACCAGATCTCAGAAACAAATGAGGCCAAGAAGGTTC
GATTAGTCCGTGAATTGGAAAAGAAATTCTCTGGAAAACATGTTGTAGTT
GTTGCTCAAATGTTCGGCAAAGTCGTGAAACCAAACAATGGTACACCAGA
TGAGTTAGAGAAATCCATTGGAGAAGCTCTTCTTGACTTGGAGGTCAATT
CTGACCTCAAAACACAACTCCGAGAGTTATATATTACTGGTGCCAAAGAA
TTGGACGTTGGGGACAAAAAGAAATGTCTCATCATCTTTGTACCTGTTCC
ATTACTGAAGCAATTTCAAAAGATCCAGCTCGATACATTTGCTGCGGTTT
ACAAGAGGTTGACTGGTAAAGACACACATTTTAGTTTTGAATTATAATCG
CACTTTGACTGCGGTACATGATTCAATCCTTGAAGATTTAGTTTACCCAT
CAGAAATTGTCGGTAAAAGCGTACGTGTCAAGTTGGATGCCTCCAGATTG
GTCAAAGTTGTTTTAGAAAAAGCCCAACAAACTAATGTTGAACACAAGAG
ACGTATTCTTCCAAAACCAACAAGAAAAACCAGATCTCAGAAACAAATGA
GGCCAAGAAGGTTCGATTAGTCCGTGAATTGGAAAAGAAATTCTCTGGAA
AACATGTTGTAGTTGTTGCTCAAATGTTCGGCAAAGTCGTGAAACCAAAC
AATGGTACACCAGATGAGTTAGAGAAATCCATTGGAGAAGCTCTTCTTGA
CTTGGAGGTCAATTCTGACCTCAAAACACAACTCCGAGAGTTATATATTA
CTGGTGCCAAAGAATTGGACGTTGGGGACAAAAAGAAATGTCTCATCATC
TTTGTACCTGTTCCATTACTGAAGCAATTTCAAAAGATCCAGCTCGATAC
ATTTGCTGCGGTTTACAAGAGGTTGACTGGTAAAGACACACATTTTAGTT
TTGAATTATAATCGCACTTTGACTGCGGTACATGATTCAATCCTTGAAGA
TTTAGTTTACCCATCAGAAATTGTCGGTAAAAGCGTACGTGTCAAGTTGG
ATGCCTCCAGATTGGTCAAAGTTGTTTTAGAAAAAGCCCAACAAACTAAT
GTTGAACACAAGAGACGTATTCTTCCAAAACCAACAAGAAAAACCAGATC
TCAGAAACAAATGAGGCCAAGAAGGTTCGATTAGTCCGTGAATTGGAAAA
GAAATTCTCTGGAAAACATGTTGTAGTTGTTGCTCAAATGTTCGGCAAAG
TCGTGAAACCAAACAATGGTACACCAGATGAGTTAGAGAAATCCATTGGA
GAAGCTCTTCTTGACTTGGAGGTCAATTCTGACCTCAAAACACAACTCCG
AGAGTTATATATTACTGGTGCCAAAGAATTGGACGTTGGGGACAAAAAGA
AATGTCTCATCATCTTTGTACCTGTTCCATTACTGAAGCAATTTCAAAAG
ATCCAGCTCGATACATTTGCTGCGGTTTACAAGAGGTTGACTGGTAAAGA
CACACATTTTAGTTTTGAATTATAATCGCACTTTGACTGCGGTACATGAT
TCAATCCTTGAAGATTTAGTTTACCCATCAGAAATTGTCGGTAAAAGCGT
ACGTGTCAAGTTGGATGCCTCCAGATTGGTCAAAGTTGTTTTAGAAAAAG
CCCAACAAACTAATGTTGAACACAAGAGACGTATTCTTCCAAAACCAACA
AGAAAAACCAGATCTCAGAAACAAATGAGGCCAAGAAGGTTCGATTAGTC
CGTGAATTGGAAAAGAAATTCTCTGGAAAACATGTTGTAGTTGTTGCTCA
AATGTTCGGCAAAGTCGTGAAACCAAACAATGGTACACCAGATGAGTTAG
AGAAATCCATTGGAGAAGCTCTTCTTGACTTGGAGGTCAATTCTGACCTC
AAAACACAACTCCGAGAGTTATATATTACTGGTGCCAAAGAATTGGACGT
TGGGGACAAAAAGAAATGTCTCATCATCTTTGTACCTGTTCCATTACTGA
AGCAATTTCAAAAGATCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000659XLOC_000659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001216-exon-sc0000007-1575043694:1106594..1107089TCONS_00001216-exon-sc0000007-1575043694:1106594..1107089Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1575043694:1106162..1106388TCONS_00001216-exon-sc0000007-1575043694:1106162..1106388Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1575043694:1102099..1102161TCONS_00001216-exon-sc0000007-1575043694:1102099..1102161Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1575043694:1101670..1101731TCONS_00001216-exon-sc0000007-1575043694:1101670..1101731Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1575043694:1101005..1101155TCONS_00001216-exon-sc0000007-1575043694:1101005..1101155Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1575043694:1099135..1099769TCONS_00001216-exon-sc0000007-1575043694:1099135..1099769Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1510915933:1106594..1107089TCONS_00001216-exon-sc0000007-1510915933:1106594..1107089Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1510915933:1106162..1106388TCONS_00001216-exon-sc0000007-1510915933:1106162..1106388Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1510915933:1102099..1102161TCONS_00001216-exon-sc0000007-1510915933:1102099..1102161Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1510915933:1101670..1101731TCONS_00001216-exon-sc0000007-1510915933:1101670..1101731Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1510915933:1101005..1101155TCONS_00001216-exon-sc0000007-1510915933:1101005..1101155Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1510915933:1099135..1099769TCONS_00001216-exon-sc0000007-1510915933:1099135..1099769Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1491911889:1106594..1107089TCONS_00001216-exon-sc0000007-1491911889:1106594..1107089Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1491911889:1106162..1106388TCONS_00001216-exon-sc0000007-1491911889:1106162..1106388Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1491911889:1102099..1102161TCONS_00001216-exon-sc0000007-1491911889:1102099..1102161Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1491911889:1101670..1101731TCONS_00001216-exon-sc0000007-1491911889:1101670..1101731Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1491911889:1101005..1101155TCONS_00001216-exon-sc0000007-1491911889:1101005..1101155Clytia hemisphaericaexon
TCONS_00001216-exon-sc0000007-1491911889:1099135..1099769TCONS_00001216-exon-sc0000007-1491911889:1099135..1099769Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001216-proteinTCONS_00001216-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1099135..1107089 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
824.565 832.075 868.459 916.365 569.522 473.373 790.202 814.358 1334.27 1146.77 1329.48 1661.13 1842.56 1714.23 1789.01 1875.16 1710.81 1971.56 962.111 1142.67 2112.95 1992.11 1380.37 1329.11 1235.49 1256.54 1706.95 1682.15 1143.5 1152.86
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000554Ribosomal_S7e
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
BLAST of TCONS_00001216 vs. Swiss-Prot (Human)
Match: RS7 (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 1.197e-89
Identity = 136/184 (73.91%), Postives = 158/184 (85.87%), Query Frame = 1
Query:  511 GKVVKPNNGTPDELEKSIGEALLDLEVNSDLKTQLRELYITGAKELDVGDKKKCLIIFVPVPLLKQFQKIQVRLVRELEKKFSGKHVVVVAQRRILPKPTRKTRSQ-KQMRPRSRTLTAVHDSILEDLVYPSEIVGKSVRVKLDASRLVKVVLEKAQQTNVEHKLDTFAAVYKRLTGKDTHFSF 1059
             K+VKPN   PDE E  I +ALL+LE+NSDLK QLREL IT AKE++VG  +K +IIFVPVP LK FQKIQVRLVRELEKKFSGKHVV +AQRRILPKPTRK+R++ KQ RPRSRTLTAVHD+ILEDLV+PSEIVGK +RVKLD SRL+KV L+KAQQ NVEHK++TF+ VYK+LTGKD +F F
Sbjct:    6 AKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEF 189          
The following BLAST results are available for this feature:
BLAST of TCONS_00001216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS71.197e-8973.9140S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P... [more]
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