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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001191 ID=TCONS_00001191|Name=TCONS_00001191|organism=Clytia hemisphaerica|type=transcript|length=900bp
ATTTCAGCTATGTTtgaaaagttcaagaatggcaAGCATGAAGTGTGTTA
TTGgaataatattttcaatatcaagtgccattttattttgtaaaagttGT
AAAGGATacaatttttacgaaaaattcCTCATCCCAGCACAAAGTTATAC
AAAAGAAGGAGGAGTTTTTCGAACGAAATCACCCACCGAATGGTTATTAC
GTTGTGGgaaaagaaaatgtatgaacACCATTATTGAAGATGAACATTGT
CAATGTACGACTTCAAACTGTGTAAAAGAAGAATCTGAAGCAAGTGGAAA
TCCTTCAAATGTTCAATGTTATCAAAcTCCATTTATACCAGCCACATTAA
CACCGATCTGTTACGAAGCGAAGAACAACCAATATGCTTCATTCACAATC
CCACTAAAAGGAAAAATCAACTCTATCAAACTCCAACATGCCTCCGGTGG
CATCAATTGTTCCCCAGTTTACAATGGAGGTCAAGGCTTGAGTAATTGGG
GTTGTCACCATAGCCATACAAGCTATCGAGAAGACGAAACTTTAACCGCA
GTGACCGATGCAAGCGATCAGATCCTCTTCCCAAACATTGGAAACTCAAT
TTCATCATTCAAATTCAAGATACCGGGTGCTTTCCAAAATGACGAGGAGT
TGACGTTGACACGAGACGAGCCTTTGGTGGTGGAGAAGGGCCAAGAGATG
AGGGTTTGGAGCACACAGGATTTGTTTAAGATGTTCGAAGATGACAATAC
AGGAAAACATTGTGTGTTggtttttctaaagttttgcTGAGACTAAAATG
TTGAAAGTGTTATTGGCGAAAAAgcaaatactttaggcgtacaaactttc
gcgagcagaaacttttcaCAGTGAATAAattgtatatattatatatagcA Run BLAST on NCBI protein sequence of TCONS_00001191-protein >TCONS_00001191-protein ID=TCONS_00001191-protein|Name=TCONS_00001191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
FQLCLKSSRMASMKCVIGIIFSISSAILFCKSCKGYNFYEKFLIPAQSYT
KEGGVFRTKSPTEWLLRCGKRKCMNTIIEDEHCQCTTSNCVKEESEASGN
PSNVQCYQTPFIPATLTPICYEAKNNQYASFTIPLKGKINSIKLQHASGG
INCSPVYNGGQGLSNWGCHHSHTSYREDETLTAVTDASDQILFPNIGNSI
SSFKFKIPGAFQNDEELTLTRDEPLVVEKGQEMRVWSTQDLFKMFEDDNT
GKHCVLVFLKFC Run BLAST on NCBI transcript from alignment at sc0000007:908255..909553- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001191 ID=TCONS_00001191|Name=TCONS_00001191|organism=Clytia hemisphaerica|type=transcript|length=1299bp|location=Sequence derived from alignment at sc0000007:908255..909553- (Clytia hemisphaerica)
ATTTCAGCTATGTTTGAAAAGTTCAAGAATGGCAAGCATGAAGTGTGTTA
TTGGAATAATATTTTCAATATCAAGTGCCATTTTATTTTGTAAAAGTTGT
AAAGGATACAATTTTTACGAAAAATTCCTCATCCCAGCACAAAGTTATAC
AAAAGAAGGAGGAGTTTTTCGAACGAAATCACCCACCGAATGGTTATTAC
GTTGTGGGAAAAGAAAATGTATGAACACCATTATTGAAGATGAACATTGT
CAATGTACGACTTCAAACTGTGTAAAAGAAGAATCTGAAGCAAGTGGAAA
TCCTTCAAATGTTCAATGTTATCAAAGTAAGACGTTCGTCATTTGCCCTT
TAATACAATTACATTAAGTGTGTGTACTTATGGAAAGGTTAAGGAAGTGA
TTGTCCTCATCAGGTCACTGTGACGGCTTGTCATTCATGAAAATTGAATA
TGGCTGTTAAACGACCCTAGCATAAACTCAGAAGAGAACCTTTTGCGGCT
TCACAGGCTTACTTTGTGTAATACAGTTAACTCTCGCTAATTCGAAGTCG
AATGAGAGAAGTCAAACTTGTTCGAATAAGAGAAGCATTCGAACTGTATC
GAGTATTTTACGAGGGCTTCCTTTTGACGGGGTTCCAGAATTAAATTCGA
ATTACAGAAAAATTCGAATAATAGAAGTTCCAGCCAGTAAACTCTTACAT
TGTTAAATTAAAGTTTCATTTTTAGCTCCATTTATACCAGCCACATTAAC
ACCGATCTGTTACGAAGCGAAGAACAACCAATATGCTTCATTCACAATCC
CACTAAAAGGAAAAATCAACTCTATCAAACTCCAACATGCCTCCGGTGGC
ATCAATTGTTCCCCAGTTTACAATGGAGGTCAAGGCTTGAGTAATTGGGG
TTGTCACCATAGCCATACAAGCTATCGAGAAGACGAAACTTTAACCGCAG
TGACCGATGCAAGCGATCAGATCCTCTTCCCAAACATTGGAAACTCAATT
TCATCATTCAAATTCAAGATACCGGGTGCTTTCCAAAATGACGAGGAGTT
GACGTTGACACGAGACGAGCCTTTGGTGGTGGAGAAGGGCCAAGAGATGA
GGGTTTGGAGCACACAGGATTTGTTTAAGATGTTCGAAGATGACAATACA
GGAAAACATTGTGTGTTGGTTTTTCTAAAGTTTTGCTGAGACTAAAATGT
TGAAAGTGTTATTGGCGAAAAAGCAAATACTTTAGGCGTACAAACTTTCG
CGAGCAGAAACTTTTCACAGTGAATAAATTGTATATATTATATATAGCA Coding sequence (CDS) from alignment at sc0000007:908255..909553- >TCONS_00001191 ID=TCONS_00001191|Name=TCONS_00001191|organism=Clytia hemisphaerica|type=CDS|length=1578bp|location=Sequence derived from alignment at sc0000007:908255..909553- (Clytia hemisphaerica)
CTCCATTTATACCAGCCACATTAACACCGATCTGTTACGAAGCGAAGAAC
AACCAATATGCTTCATTCACAATCCCACTAAAAGGAAAAATCAACTCTAT
CAAACTCCAACATGCCTCCGGTGGCATCAATTGTTCCCCAGTTTACAATG
GAGGTCAAGGCTTGAGTAATTGGGGTTGTCACCATAGCCATACAAGCTAT
CGAGAAGACGAAACTTTAACCGCAGTGACCGATGCAAGCGATCAGATCCT
CTTCCCAAACATTGGAAACTCAATTTCATCATTCAAATTCAAGATACCGG
GTGCTTTCCAAAATGACGAGGAGTTGACGTTGACACGAGACGAGCCTTTG
GTGGTGGAGAAGGGCCAAGAGATGAGGGTTTGGAGCACACAGGATTTGTT
TAAGATGTTCGAAGATGACAATACAGGAAAACATTGTGTGTTGGTTTTTC
TAAAGTTTTGCTGATTTCAGCTATGTTTGAAAAGTTCAAGAATGGCAAGC
ATGAAGTGTGTTATTGGAATAATATTTTCAATATCAAGTGCCATTTTATT
TTGTAAAAGTTGTAAAGGATACAATTTTTACGAAAAATTCCTCATCCCAG
CACAAAGTTATACAAAAGAAGGAGGAGTTTTTCGAACGAAATCACCCACC
GAATGGTTATTACGTTGTGGGAAAAGAAAATGTATGAACACCATTATTGA
AGATGAACATTGTCAATGTACGACTTCAAACTGTGTAAAAGAAGAATCTG
AAGCAAGTGGAAATCCTTCAAATGTTCAATGTTATCAAACTCCATTTATA
CCAGCCACATTAACACCGATCTGTTACGAAGCGAAGAACAACCAATATGC
TTCATTCACAATCCCACTAAAAGGAAAAATCAACTCTATCAAACTCCAAC
ATGCCTCCGGTGGCATCAATTGTTCCCCAGTTTACAATGGAGGTCAAGGC
TTGAGTAATTGGGGTTGTCACCATAGCCATACAAGCTATCGAGAAGACGA
AACTTTAACCGCAGTGACCGATGCAAGCGATCAGATCCTCTTCCCAAACA
TTGGAAACTCAATTTCATCATTCAAATTCAAGATACCGGGTGCTTTCCAA
AATGACGAGGAGTTGACGTTGACACGAGACGAGCCTTTGGTGGTGGAGAA
GGGCCAAGAGATGAGGGTTTGGAGCACACAGGATTTGTTTAAGATGTTCG
AAGATGACAATACAGGAAAACATTGTGTGTTGGTTTTTCTAAAGTTTTGC
TGATTTCAGCTATGTTTGAAAAGTTCAAGAATGGCAAGCATGAAGTGTGT
TATTGGAATAATATTTTCAATATCAAGTGCCATTTTATTTTGTAAAAGTT
GTAAAGGATACAATTTTTACGAAAAATTCCTCATCCCAGCACAAAGTTAT
ACAAAAGAAGGAGGAGTTTTTCGAACGAAATCACCCACCGAATGGTTATT
ACGTTGTGGGAAAAGAAAATGTATGAACACCATTATTGAAGATGAACATT
GTCAATGTACGACTTCAAACTGTGTAAAAGAAGAATCTGAAGCAAGTGGA
AATCCTTCAAATGTTCAATGTTATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001191-exon-sc0000007-1575043694:909228..909553 | TCONS_00001191-exon-sc0000007-1575043694:909228..909553 | Clytia hemisphaerica | exon |
| TCONS_00001191-exon-sc0000007-1575043694:908255..908828 | TCONS_00001191-exon-sc0000007-1575043694:908255..908828 | Clytia hemisphaerica | exon |
| TCONS_00001191-exon-sc0000007-1510915933:909228..909553 | TCONS_00001191-exon-sc0000007-1510915933:909228..909553 | Clytia hemisphaerica | exon |
| TCONS_00001191-exon-sc0000007-1510915933:908255..908828 | TCONS_00001191-exon-sc0000007-1510915933:908255..908828 | Clytia hemisphaerica | exon |
| TCONS_00001191-exon-sc0000007-1491911889:909228..909553 | TCONS_00001191-exon-sc0000007-1491911889:909228..909553 | Clytia hemisphaerica | exon |
| TCONS_00001191-exon-sc0000007-1491911889:908255..908828 | TCONS_00001191-exon-sc0000007-1491911889:908255..908828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:908255..909553 - |
Blast
The following BLAST results are available for this feature:
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