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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001189 ID=TCONS_00001189|Name=TCONS_00001189|organism=Clytia hemisphaerica|type=transcript|length=698bp
aaagtgaagTCTTTGCAAGGTTGATGAAAACTCAGACCGGTGATCAAAAA
GCATTAAGGGTGATTTCCTCTACCAGTATTTTATAATCACTGATgcaatt
tattgacaaaaattctCTCAAACAAGGAAGATAGAAGATAGACGGCTTGT
GAGGTGTTTATTTTAATCAACTTAGTTTGTGCTTGAAGGTTGATTTTGTT
ACTTGGCATAATGAAGAAATATACAGCCATGAAAACAGatttTCTGGTCA
TCGTTTTGGTATGTGCATTTCTGTTTGGAATTTCAAGTTGTGAAagcaaa
tatctttccaatcgtcAACTCAAACCCAAGAAAACACAATCGGAAACAAG
ACCCAAAGCGTTTATTACATTACGACAACGTAATTGCCATGATGTTTGTC
GGTTTAAACATAGACTTTGCAATGATATTGCATCGATGAAGAAGATCAGG
GAAGAACAGATCATCTGCACAGCTTCGAAAACTACTTGCTTGCTCAAATG
TTCAGCATTGAAATAATTGGACACAGACATTATTCACCATAAAAAGGAAA
ACCAAACtcagtattttagtttttttgtataaaattttaaattatagTAT
TGACAGAATCAGCTCTTGTAAATAAAGACACTTTATTCGAATATTTAGAa
gtaatactttttaaaagatgGACGACCTATATTTTAGGGAAATTTAAA Run BLAST on NCBI transcript from alignment at sc0000007:901125..906880- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001189 ID=TCONS_00001189|Name=TCONS_00001189|organism=Clytia hemisphaerica|type=transcript|length=5756bp|location=Sequence derived from alignment at sc0000007:901125..906880- (Clytia hemisphaerica)
AAAGTGAAGTCTTTGCAAGGTTGATGAAAACTCAGACCGGTGATCAAAAA
GCATTAAGGGTGATTTCCTCTACCAGTATTTTATAATCACTGATGCAATT
TATTGACAAAAATTCTCTCAAACAAGGAAGATAGAAGATAGACGGCTTGT
GAGGTGTTTATTTTAATCAACTTAGTTTGTGCTTGAAGGTTGATTTTGTT
ACTTGGCATAATGAAGAAATATACAGCCATGAAAACAGGTAGGTGTCTTT
ATTCTTCGTCTATCCAATAGATTTAGATCTCAGAGTTAAATATTTAGGGT
AAGATTTTTCACAATGCTTTCATCTAAAAAGAGGTGCTAGCTGGGGCAGC
GTCTCGAAAATTCTTCGTTTTAAAAGCTATTCATGCATCACGCAAAATTA
CCCATAAACAAAGCTCTTGGATTTTGTTCTATGGATTTACAGGCTATGTT
AATATGCAAACAGATCCTGATTATTCCGCGCATGTCATCTTGGTCATGGC
TCTGTAAAGGAACACAGGTTAGCGGATCGATTTGTTGATTTTCATCCATA
TTTGGATTTAGTGAAAGTGTTGGTTGGCTGAAGCAACGCAATCAGACCAA
AATCATACGCCAATCACAAACATAAATACTGTATTAGAGCAAAGCAATTT
TTTATGTATTGGCTGGACAACCAAGTCAGATCTTCACATTCAACATATCC
TTTTAGAACATAGCGTGGTGTGTGATGATCTACCATAAGATTAGGGCCCA
TATATTACAGACCTTTTCAGACCAAAGAAGGTTAATAAAAAATGTAATTC
ACACCATGAAGTCCTCTAATTTCAAAATTTGAAAATAAATTAATTTGAGT
TTGATGCGAATAGAGTAATGACCAAATTATTCCATCTTAGGTTTTTCCGT
GGGTTTTCCATATAAATTTCTACTTTAATTAAGTTATCATGTACATCTAA
TATCTAAATACTCTCATCAAGCCTTCTCTAAGATTTTGACCGATTTTCTC
GCCTTTTCTTTTAAATTAAATGCTTAGCACAAATTCTTAAGATTTCAAAA
TCACAATTTGATAGAAGTTAAATACACCCCTTCTCACAGACCCACTGTGA
CCCCTTCCCACTGGGAAAATTAGCCAAAATATCGTCCCCAGCGGAAAATT
ATACACAAATCTTCACTGCAAAATAGTGTGCTATTTTTTCCGTCCCCACC
GTCTTTTCTGGCTCGAAAACAATAGATTTCAAAATCCCCGGCCATAAAAC
CCCATCGAGTTTTGGTCCGTTATTTTTACACCCACTGACTGAAAATCCTA
CCACTCCAGGGGAATAAGGCGGGTCATTGGAGGTCAAAATTCTTGCAACG
TTACAAATCATTTTCAGAAGCTCATTTTGGGCTTAAACGAAGCGTATAAC
TAAGTAGAATAAGATTCAGTCTAGGTAGATGTTTTTTTTATTTTGATATT
TTGCGTAATTCGCAAAAATCCTCAATTTTGCGCTATTTTGATGACGTCAT
AAAAATTGAAATTCCAATAACTTTTGAAATCTTTTGAAAATTTGCATTGA
AATGCATCTTTGTTGAAAATTTGAAATTATTTTGATGATTCTATCAAAAG
TTATTGGAATTTCAATTTTTATGACGTCGACGAAATAAATAGCCTTAATC
CCCTGGAGCAGGTCTGTGAAAAAGGGGTGTTTAAATTCTCGAGGAAGATA
TAAAAAATCCCATTTTCGATTTCTGCTCTATCCACGCAACGGATTAGAGA
TCAAGATATTCACTAATATTTCTTTTTTGATAATAACACCTCTGCTAATG
GAACTTCTTCCCATAGTGAGATGAAAATTTCTATAGAAACCCCAATGAAT
AAGCTATAATTTATATTGTTCCCAGAACAAAAAATTCCTGTGGAGCTGAT
TTTGGAGTCCAATTTTTTCCCTTTAAATTTCAAATGCGGATAAAAGCAAA
GTAAATTTTTCCCTTTCTCCCCTATATTATAAAACGAGCTGTCAAACTCA
AATTTTATCAAAAGTTAAAGCCATGCTTGTTTTCGCTGCAGTGTATTTTG
AGGCAGACAAAATGGTTTGAATTTTACTCATAAAGTGCAAACTTTATGGA
CCAACTCAGCTTATATTATCCACTAAAAGAGTAAAAGAGTAAGACTACAA
AATAATAAATGATGCCTTCAGTCCTGAGAATCCATTCATTTGTAGTATTT
ACTGTTTTTTTGTACACATTTCGGCGATGCTTCAAAGAAAAATATTTTGA
AGCCCGTTTCCTCGTTTTTTGTCATGACGTCATAATTTGCCCTTTTGTTT
CCAATATTTTCAGATAAAAGCTGTGATATTTTTTTACCAAGAGTATTATA
CTTGGTAATGGCTGACGTCAGCAAAGTGTTAAGGCTTGCATCCCTCAATT
TTTCTTCCTTGACACATTAGGACAGGAATTTCAGGACTAATTTCATAAAA
TGCAATCTTCACAAACAATCTTCAGTGTTTTCAATTTTTAAAATCACAGT
TGTTCGACTACAAAAATTTTACTGAGAACTACGGCTTTGCAGATAGCCAC
ATGATAAGAAATATAAGGCATCAAAAAGTGAGATCCACCCACGATTGTTT
TGAAAATCAGAATTTGGCCTTCCATTAAGATATTAAAAGGTGTAATTAAA
AACCCTCGCATCTCATCATCAACGTCTATGAATGGCTCAAGGAAATTGTC
TCAATGCCAATATCCTACATTCTATGTGCCTACTAACTCAATGATTAAGA
AGTAAACAACAAACTCGTCATCGATGACAACTCATTTAAAAACGATTAAC
TGTGAAATCAATACTCAAACCCCAAACATACACCGCTCTGACCGATACGT
GCTCATGCTAAACCAATGGGCTGTCGTAATTTCCCTGCAACATATGGGCT
GTCAGAAATATCAAACTTCTATACTGCAGAAAATTAAATTGAATTTAGAT
TTCGATAAAATTGACATTTTTTTTCGCTAGGTCACAATTTCATATTTTAA
AATCTGCTAAAAATCCGGAGGTAAATGATTTCAAAGTTATGTTTTGCCTT
TGATCGCTCTCATCGAAAATTCAAGCTGAAAGGAATTTTTGATAATTATT
TTTAAACTGTTCTGGGTGTAAACCTGGTCTAGTCACGTAAAAGCTCTAAA
ATTTCAGAATTTTATTGGCTGAAGTGGTTTTATTTTTTCTAAAAGATCGC
GGTAACATGTTCTTCGACAGGATAACGACGACTGGGTTTTTTATTAAATT
AAGTAAAATTTAATAGATGATAAAAATTTGTTCACGGAAATTATACCATT
GTTGTTAAAGAAACATATCAATTAAAGACCGGTTAAAATACCATACACAA
TTTTTTTGTTATGGAAGGAAAAAAAAGTTTTAATTTGCCACGTACTTAAA
AAAACATCAAGAGTGCATTAACGGGACAACATTTGAGCGGAATCTCATTA
AAACGAAAACTACATTGCGCAACATCCTTACACTCCTACCATTCACAAAT
TCCATTCTCATGATTCAATATGTCTCAAAAGAATCGCCTTCCTTCACCAG
AATCAATGTGATATTCATAAATCAATAAACTTGAACGCTTGAAGGACAGC
TTGGGTTGAGTGATTGGGAATGATTGACCAACAAAAAATTAGGACAATAC
GCACATGAATTATTATCGAAAACCCAAAAACCTATACTAACAAAAATTAA
AGGGGTGGGCAGTAAATGAGGAGTAAGTTGGTGACTGGAAAGAAATTAGC
AAATGAATGGACGGCAAAGTAAATGAATGGTAAATTAGAGAGCGGATGCC
ATGCGCGTGCCAACATAATTTGATACAATTCTTTCTTCAACAAAACTCTA
AATTTGTAATTGACAATATCTAAGGAAGAGTACTTTTCATGATGAATCAA
CTATTCTTTAAAAAAAAGGAAAAAAGATGGTCAATTATTAGATTTCCCTT
TTCAATCAAATGCAATACTTTACTTGTTAGAATTGAAATATTTGATGCCC
TTCCACGTGACAAGTGAACAGGATATCAAATCCTTCCTACATTCATTGGC
TGTATACTACCAGGTATGCCAATCTTAACTTCACGAAGGGGCTGGGTTCG
ATTTTAACAATGTCAAATGTCAGTATTGTACTGTTGTGTCACGTCAAAAC
AATGACTTGTTCCATTCGACGCTCTTTCCGCTCTACAAAACTAAACATAC
AATCCTTTCTTTATAAAACTTTTTGAACAAAGATGTTGGGTGTATATTAA
GTAATTTCTCCGAACTATTATGTTGTATATTTTGAGTTCTCAAAGATATT
GTTCAATATAACAGTCATTATTAATCCTTTGGTCCAATATATTTTCCCGA
TTTTTTCAAAGATGATTTAAGGACCGTTAATTTCCGAGGCAAATTATTTA
ACGTTCATCACAAGATCCCTTGTCATGAAATTAATCATCCGAAAAAGCCA
TTTTGACATCCGCTAATGGGTAATATCCAATCAAGTGTGGTTGTAACAGA
ATAAGTTACATTCAAACATTTTATTAATGTTCAAAGTTTGAGGTTTGCTA
AATAACCTCACTTCTGTCAAGTCGCATTGATTTATGATCGCAAAAATTCA
TCTTTGAAGTGGTCGTCCTATGGGACAGTCAAATGATAAATTTAGATTGT
GAAGATATATTTAGTTGAAGGCGTTTGAGCAGTCGTCTTTATCTTAATTC
CGATAGATCATAGTCGAAGAGGCACTTTTATATCGGCTTGCCTTTCAGAA
CAATCAGAGGAATTTGTATTGTTTGATTGTTTGATTGACATCTTGTGAAA
GCATTAAATGTGATTTCAGAAAGGTTTGTTCGTCATTACTGAATGAACGA
TTTGATGAACAAACACTCACCACACATAACAAATTGAATTTGATTATCCA
AAAATCATGAAAGGTTCGTTTAGAAAATGATTTTGATGATTTCAACTTTA
CTTTGATAAATGGATTTCTATGTGCATGGCTTTGTTAAATTCTTGCATAC
TGGAGACCTTTTAATTTCAATGAAATGATCTCAATTTCAGACGCATTTAG
TTGTTGAATAAGCGAGTCCAGCCCAAATATTAAAATGTAAATGAATGCAG
TCATCAGAAATAGACAAACTAATCTATTAAGTTTGATGTTTTAGTTGTAT
GGAATGCTTAGTGGGTATACAAAACCTAGTGGTCACTCGTGTCAACACCC
AGCATAACATATAAGAAGAGGACTTTGGGGGGGGGGATAGGACTTTAGGG
GCTCGATCAGCTTTGATGTTTACGAATGTTTCTTTTTTTCATTTAGATTT
TCTGGTCATCGTTTTGGTATGTGCATTTCTGTTTGGAATTTCAAGTTGTG
AAAGCAAATATCTTTCCAATCGTCAACTCAAACCCAAGAAAACACAATCG
GAAACAAGACCCAAAGCGTTTATTACATTACGACAACGTAATTGCCATGA
TGTTTGTCGGTTTAAACATAGACTTTGCAATGATATTGCATCGATGAAGA
AGATCAGGGAAGAACAGATCATCTGCACAGCTTCGAAAACTACTTGCTTG
CTCAAATGTTCAGCATTGAAATAATTGGACACAGACATTATTCACCATAA
AAAGGAAAACCAAACTCAGTATTTTAGTTTTTTTGTATAAAATTTTAAAT
TATAGTATTGACAGAATCAGCTCTTGTAAATAAAGACACTTTATTCGAAT
ATTTAGAAGTAATACTTTTTAAAAGATGGACGACCTATATTTTAGGGAAA
TTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001189-exon-sc0000007-1575043694:906643..906880 | TCONS_00001189-exon-sc0000007-1575043694:906643..906880 | Clytia hemisphaerica | exon |
| TCONS_00001189-exon-sc0000007-1575043694:901125..901584 | TCONS_00001189-exon-sc0000007-1575043694:901125..901584 | Clytia hemisphaerica | exon |
| TCONS_00001189-exon-sc0000007-1510915933:906643..906880 | TCONS_00001189-exon-sc0000007-1510915933:906643..906880 | Clytia hemisphaerica | exon |
| TCONS_00001189-exon-sc0000007-1510915933:901125..901584 | TCONS_00001189-exon-sc0000007-1510915933:901125..901584 | Clytia hemisphaerica | exon |
| TCONS_00001189-exon-sc0000007-1491911889:906643..906880 | TCONS_00001189-exon-sc0000007-1491911889:906643..906880 | Clytia hemisphaerica | exon |
| TCONS_00001189-exon-sc0000007-1491911889:901125..901584 | TCONS_00001189-exon-sc0000007-1491911889:901125..901584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:901125..906880 - |
Blast
The following BLAST results are available for this feature:
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