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TCONS_00001189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001189
Unique NameTCONS_00001189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001189 ID=TCONS_00001189|Name=TCONS_00001189|organism=Clytia hemisphaerica|type=transcript|length=698bp
aaagtgaagTCTTTGCAAGGTTGATGAAAACTCAGACCGGTGATCAAAAA
GCATTAAGGGTGATTTCCTCTACCAGTATTTTATAATCACTGATgcaatt
tattgacaaaaattctCTCAAACAAGGAAGATAGAAGATAGACGGCTTGT
GAGGTGTTTATTTTAATCAACTTAGTTTGTGCTTGAAGGTTGATTTTGTT
ACTTGGCATAATGAAGAAATATACAGCCATGAAAACAGatttTCTGGTCA
TCGTTTTGGTATGTGCATTTCTGTTTGGAATTTCAAGTTGTGAAagcaaa
tatctttccaatcgtcAACTCAAACCCAAGAAAACACAATCGGAAACAAG
ACCCAAAGCGTTTATTACATTACGACAACGTAATTGCCATGATGTTTGTC
GGTTTAAACATAGACTTTGCAATGATATTGCATCGATGAAGAAGATCAGG
GAAGAACAGATCATCTGCACAGCTTCGAAAACTACTTGCTTGCTCAAATG
TTCAGCATTGAAATAATTGGACACAGACATTATTCACCATAAAAAGGAAA
ACCAAACtcagtattttagtttttttgtataaaattttaaattatagTAT
TGACAGAATCAGCTCTTGTAAATAAAGACACTTTATTCGAATATTTAGAa
gtaatactttttaaaagatgGACGACCTATATTTTAGGGAAATTTAAA
Run BLAST on NCBI

transcript from alignment at sc0000007:901125..906880-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001189 ID=TCONS_00001189|Name=TCONS_00001189|organism=Clytia hemisphaerica|type=transcript|length=5756bp|location=Sequence derived from alignment at sc0000007:901125..906880- (Clytia hemisphaerica)
AAAGTGAAGTCTTTGCAAGGTTGATGAAAACTCAGACCGGTGATCAAAAA GCATTAAGGGTGATTTCCTCTACCAGTATTTTATAATCACTGATGCAATT TATTGACAAAAATTCTCTCAAACAAGGAAGATAGAAGATAGACGGCTTGT GAGGTGTTTATTTTAATCAACTTAGTTTGTGCTTGAAGGTTGATTTTGTT ACTTGGCATAATGAAGAAATATACAGCCATGAAAACAGGTAGGTGTCTTT ATTCTTCGTCTATCCAATAGATTTAGATCTCAGAGTTAAATATTTAGGGT AAGATTTTTCACAATGCTTTCATCTAAAAAGAGGTGCTAGCTGGGGCAGC GTCTCGAAAATTCTTCGTTTTAAAAGCTATTCATGCATCACGCAAAATTA CCCATAAACAAAGCTCTTGGATTTTGTTCTATGGATTTACAGGCTATGTT AATATGCAAACAGATCCTGATTATTCCGCGCATGTCATCTTGGTCATGGC TCTGTAAAGGAACACAGGTTAGCGGATCGATTTGTTGATTTTCATCCATA TTTGGATTTAGTGAAAGTGTTGGTTGGCTGAAGCAACGCAATCAGACCAA AATCATACGCCAATCACAAACATAAATACTGTATTAGAGCAAAGCAATTT TTTATGTATTGGCTGGACAACCAAGTCAGATCTTCACATTCAACATATCC TTTTAGAACATAGCGTGGTGTGTGATGATCTACCATAAGATTAGGGCCCA TATATTACAGACCTTTTCAGACCAAAGAAGGTTAATAAAAAATGTAATTC ACACCATGAAGTCCTCTAATTTCAAAATTTGAAAATAAATTAATTTGAGT TTGATGCGAATAGAGTAATGACCAAATTATTCCATCTTAGGTTTTTCCGT GGGTTTTCCATATAAATTTCTACTTTAATTAAGTTATCATGTACATCTAA TATCTAAATACTCTCATCAAGCCTTCTCTAAGATTTTGACCGATTTTCTC GCCTTTTCTTTTAAATTAAATGCTTAGCACAAATTCTTAAGATTTCAAAA TCACAATTTGATAGAAGTTAAATACACCCCTTCTCACAGACCCACTGTGA CCCCTTCCCACTGGGAAAATTAGCCAAAATATCGTCCCCAGCGGAAAATT ATACACAAATCTTCACTGCAAAATAGTGTGCTATTTTTTCCGTCCCCACC GTCTTTTCTGGCTCGAAAACAATAGATTTCAAAATCCCCGGCCATAAAAC CCCATCGAGTTTTGGTCCGTTATTTTTACACCCACTGACTGAAAATCCTA CCACTCCAGGGGAATAAGGCGGGTCATTGGAGGTCAAAATTCTTGCAACG TTACAAATCATTTTCAGAAGCTCATTTTGGGCTTAAACGAAGCGTATAAC TAAGTAGAATAAGATTCAGTCTAGGTAGATGTTTTTTTTATTTTGATATT TTGCGTAATTCGCAAAAATCCTCAATTTTGCGCTATTTTGATGACGTCAT AAAAATTGAAATTCCAATAACTTTTGAAATCTTTTGAAAATTTGCATTGA AATGCATCTTTGTTGAAAATTTGAAATTATTTTGATGATTCTATCAAAAG TTATTGGAATTTCAATTTTTATGACGTCGACGAAATAAATAGCCTTAATC CCCTGGAGCAGGTCTGTGAAAAAGGGGTGTTTAAATTCTCGAGGAAGATA TAAAAAATCCCATTTTCGATTTCTGCTCTATCCACGCAACGGATTAGAGA TCAAGATATTCACTAATATTTCTTTTTTGATAATAACACCTCTGCTAATG GAACTTCTTCCCATAGTGAGATGAAAATTTCTATAGAAACCCCAATGAAT AAGCTATAATTTATATTGTTCCCAGAACAAAAAATTCCTGTGGAGCTGAT TTTGGAGTCCAATTTTTTCCCTTTAAATTTCAAATGCGGATAAAAGCAAA GTAAATTTTTCCCTTTCTCCCCTATATTATAAAACGAGCTGTCAAACTCA AATTTTATCAAAAGTTAAAGCCATGCTTGTTTTCGCTGCAGTGTATTTTG AGGCAGACAAAATGGTTTGAATTTTACTCATAAAGTGCAAACTTTATGGA CCAACTCAGCTTATATTATCCACTAAAAGAGTAAAAGAGTAAGACTACAA AATAATAAATGATGCCTTCAGTCCTGAGAATCCATTCATTTGTAGTATTT ACTGTTTTTTTGTACACATTTCGGCGATGCTTCAAAGAAAAATATTTTGA AGCCCGTTTCCTCGTTTTTTGTCATGACGTCATAATTTGCCCTTTTGTTT CCAATATTTTCAGATAAAAGCTGTGATATTTTTTTACCAAGAGTATTATA CTTGGTAATGGCTGACGTCAGCAAAGTGTTAAGGCTTGCATCCCTCAATT TTTCTTCCTTGACACATTAGGACAGGAATTTCAGGACTAATTTCATAAAA TGCAATCTTCACAAACAATCTTCAGTGTTTTCAATTTTTAAAATCACAGT TGTTCGACTACAAAAATTTTACTGAGAACTACGGCTTTGCAGATAGCCAC ATGATAAGAAATATAAGGCATCAAAAAGTGAGATCCACCCACGATTGTTT TGAAAATCAGAATTTGGCCTTCCATTAAGATATTAAAAGGTGTAATTAAA AACCCTCGCATCTCATCATCAACGTCTATGAATGGCTCAAGGAAATTGTC TCAATGCCAATATCCTACATTCTATGTGCCTACTAACTCAATGATTAAGA AGTAAACAACAAACTCGTCATCGATGACAACTCATTTAAAAACGATTAAC TGTGAAATCAATACTCAAACCCCAAACATACACCGCTCTGACCGATACGT GCTCATGCTAAACCAATGGGCTGTCGTAATTTCCCTGCAACATATGGGCT GTCAGAAATATCAAACTTCTATACTGCAGAAAATTAAATTGAATTTAGAT TTCGATAAAATTGACATTTTTTTTCGCTAGGTCACAATTTCATATTTTAA AATCTGCTAAAAATCCGGAGGTAAATGATTTCAAAGTTATGTTTTGCCTT TGATCGCTCTCATCGAAAATTCAAGCTGAAAGGAATTTTTGATAATTATT TTTAAACTGTTCTGGGTGTAAACCTGGTCTAGTCACGTAAAAGCTCTAAA ATTTCAGAATTTTATTGGCTGAAGTGGTTTTATTTTTTCTAAAAGATCGC GGTAACATGTTCTTCGACAGGATAACGACGACTGGGTTTTTTATTAAATT AAGTAAAATTTAATAGATGATAAAAATTTGTTCACGGAAATTATACCATT GTTGTTAAAGAAACATATCAATTAAAGACCGGTTAAAATACCATACACAA TTTTTTTGTTATGGAAGGAAAAAAAAGTTTTAATTTGCCACGTACTTAAA AAAACATCAAGAGTGCATTAACGGGACAACATTTGAGCGGAATCTCATTA AAACGAAAACTACATTGCGCAACATCCTTACACTCCTACCATTCACAAAT TCCATTCTCATGATTCAATATGTCTCAAAAGAATCGCCTTCCTTCACCAG AATCAATGTGATATTCATAAATCAATAAACTTGAACGCTTGAAGGACAGC TTGGGTTGAGTGATTGGGAATGATTGACCAACAAAAAATTAGGACAATAC GCACATGAATTATTATCGAAAACCCAAAAACCTATACTAACAAAAATTAA AGGGGTGGGCAGTAAATGAGGAGTAAGTTGGTGACTGGAAAGAAATTAGC AAATGAATGGACGGCAAAGTAAATGAATGGTAAATTAGAGAGCGGATGCC ATGCGCGTGCCAACATAATTTGATACAATTCTTTCTTCAACAAAACTCTA AATTTGTAATTGACAATATCTAAGGAAGAGTACTTTTCATGATGAATCAA CTATTCTTTAAAAAAAAGGAAAAAAGATGGTCAATTATTAGATTTCCCTT TTCAATCAAATGCAATACTTTACTTGTTAGAATTGAAATATTTGATGCCC TTCCACGTGACAAGTGAACAGGATATCAAATCCTTCCTACATTCATTGGC TGTATACTACCAGGTATGCCAATCTTAACTTCACGAAGGGGCTGGGTTCG ATTTTAACAATGTCAAATGTCAGTATTGTACTGTTGTGTCACGTCAAAAC AATGACTTGTTCCATTCGACGCTCTTTCCGCTCTACAAAACTAAACATAC AATCCTTTCTTTATAAAACTTTTTGAACAAAGATGTTGGGTGTATATTAA GTAATTTCTCCGAACTATTATGTTGTATATTTTGAGTTCTCAAAGATATT GTTCAATATAACAGTCATTATTAATCCTTTGGTCCAATATATTTTCCCGA TTTTTTCAAAGATGATTTAAGGACCGTTAATTTCCGAGGCAAATTATTTA ACGTTCATCACAAGATCCCTTGTCATGAAATTAATCATCCGAAAAAGCCA TTTTGACATCCGCTAATGGGTAATATCCAATCAAGTGTGGTTGTAACAGA ATAAGTTACATTCAAACATTTTATTAATGTTCAAAGTTTGAGGTTTGCTA AATAACCTCACTTCTGTCAAGTCGCATTGATTTATGATCGCAAAAATTCA TCTTTGAAGTGGTCGTCCTATGGGACAGTCAAATGATAAATTTAGATTGT GAAGATATATTTAGTTGAAGGCGTTTGAGCAGTCGTCTTTATCTTAATTC CGATAGATCATAGTCGAAGAGGCACTTTTATATCGGCTTGCCTTTCAGAA CAATCAGAGGAATTTGTATTGTTTGATTGTTTGATTGACATCTTGTGAAA GCATTAAATGTGATTTCAGAAAGGTTTGTTCGTCATTACTGAATGAACGA TTTGATGAACAAACACTCACCACACATAACAAATTGAATTTGATTATCCA AAAATCATGAAAGGTTCGTTTAGAAAATGATTTTGATGATTTCAACTTTA CTTTGATAAATGGATTTCTATGTGCATGGCTTTGTTAAATTCTTGCATAC TGGAGACCTTTTAATTTCAATGAAATGATCTCAATTTCAGACGCATTTAG TTGTTGAATAAGCGAGTCCAGCCCAAATATTAAAATGTAAATGAATGCAG TCATCAGAAATAGACAAACTAATCTATTAAGTTTGATGTTTTAGTTGTAT GGAATGCTTAGTGGGTATACAAAACCTAGTGGTCACTCGTGTCAACACCC AGCATAACATATAAGAAGAGGACTTTGGGGGGGGGGATAGGACTTTAGGG GCTCGATCAGCTTTGATGTTTACGAATGTTTCTTTTTTTCATTTAGATTT TCTGGTCATCGTTTTGGTATGTGCATTTCTGTTTGGAATTTCAAGTTGTG AAAGCAAATATCTTTCCAATCGTCAACTCAAACCCAAGAAAACACAATCG GAAACAAGACCCAAAGCGTTTATTACATTACGACAACGTAATTGCCATGA TGTTTGTCGGTTTAAACATAGACTTTGCAATGATATTGCATCGATGAAGA AGATCAGGGAAGAACAGATCATCTGCACAGCTTCGAAAACTACTTGCTTG CTCAAATGTTCAGCATTGAAATAATTGGACACAGACATTATTCACCATAA AAAGGAAAACCAAACTCAGTATTTTAGTTTTTTTGTATAAAATTTTAAAT TATAGTATTGACAGAATCAGCTCTTGTAAATAAAGACACTTTATTCGAAT ATTTAGAAGTAATACTTTTTAAAAGATGGACGACCTATATTTTAGGGAAA TTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000645XLOC_000645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001189-exon-sc0000007-1575043694:906643..906880TCONS_00001189-exon-sc0000007-1575043694:906643..906880Clytia hemisphaericaexon
TCONS_00001189-exon-sc0000007-1575043694:901125..901584TCONS_00001189-exon-sc0000007-1575043694:901125..901584Clytia hemisphaericaexon
TCONS_00001189-exon-sc0000007-1510915933:906643..906880TCONS_00001189-exon-sc0000007-1510915933:906643..906880Clytia hemisphaericaexon
TCONS_00001189-exon-sc0000007-1510915933:901125..901584TCONS_00001189-exon-sc0000007-1510915933:901125..901584Clytia hemisphaericaexon
TCONS_00001189-exon-sc0000007-1491911889:906643..906880TCONS_00001189-exon-sc0000007-1491911889:906643..906880Clytia hemisphaericaexon
TCONS_00001189-exon-sc0000007-1491911889:901125..901584TCONS_00001189-exon-sc0000007-1491911889:901125..901584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:901125..906880 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0.283498 0 0 0 0 0.20421 0.186031 3.93644 0.775445 0.807061 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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