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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001180 ID=TCONS_00001180|Name=TCONS_00001180|organism=Clytia hemisphaerica|type=transcript|length=1191bp CGCTTTGATTCATGCAAGGACAAAGGTAGTTGCCAAGTTTGCATGAAGGA AGCACAAGTACAGAGAAGACGTGGTGAAAAATAACATTTATATAACCAAG TGAAAGTAGAGAAGGAAAATTTTTGATCAACATGTACGATCATAAGAAGT TGAGCAATCAACTAGAAACTTTATCCAATAATAATATGAACGCAAAGAAA CCCATTCGAATTGTGGTTCTTGGACAGTGTGGTGTTGGGAAAACAGCATT GGTTTCGAGATGTTTACAAAATACGTTTCCACAAGACTCTTCATCGGGTA AAGACATTTCACATCGATACAACATGacaatcaataaaaagaaaaccgTT TGTCTCGATATTGTCGATTTCAACGATAAAAACGACGCACTTATCAGTTG TGCAGATGCTTTTATTATTTGTTACGCGATAAACGATCGAAAAAGTTTCG AAGCTATCGATGCTTATTTGGACAAAATTGTCGAGGCTAATATAAAAAGT CCTAAAATTGGAATTGTTGGAAATAAAATTGACTTGTATAATGATAGAGA GGTAGCGTCAACAGAAGGACTCGAACTAGCGAAAGAAATTAACAGTCTAT TTTATGAAACGTCAGCTAAAGTTCCCGTTATAGATGTGCGTCAAGTGTTT TATGATTTATATCAATCTTTAAAGAACGCTAAACGATCCAAGAAAGGTAA AAGAGGAAGTATTGAACTTGAATCTTCAGACGTTTTCAGTCTACTGAACT ATTCCATTATTAATAATTCGGGCGTCATTGGGCGGTCATCAAACAGCAGT TGTTTCTCAGCTTTACTTAGCGCCCGAAGGAAAAAGTCGCCGCCACCATT ATTTGGACGAAGCTGGTCGTCAGAAAGTGTTTAATTGTTAATTGGttgat tttctgatttaaaCGGTCATGTTTTGGCAATTGCTTAGCAGACTGACTGT CTATCAAAATAATTACACATACATAACCTTCTAaccttgattttgttttg atttgttccAATTTGAGGATGGTTACctaatatatctttttttgtttttg ttgatttttaaatttaaaaaagaaatatagaaTTTTATTAACGGTTTATA AAAGACATTTAATTTTTTGTGTAAATAACAGAGTTAATATTTATTTATCg gtattttatatatatatattcacGAAGAAATAAAAAGACAT Run BLAST on NCBI protein sequence of TCONS_00001180-protein >TCONS_00001180-protein ID=TCONS_00001180-protein|Name=TCONS_00001180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MYDHKKLSNQLETLSNNNMNAKKPIRIVVLGQCGVGKTALVSRCLQNTFP QDSSSGKDISHRYNMTINKKKTVCLDIVDFNDKNDALISCADAFIICYAI NDRKSFEAIDAYLDKIVEANIKSPKIGIVGNKIDLYNDREVASTEGLELA KEINSLFYETSAKVPVIDVRQVFYDLYQSLKNAKRSKKGKRGSIELESSD VFSLLNYSIINNSGVIGRSSNSSCFSALLSARRKKSPPPLFGRSWSSESV Run BLAST on NCBI transcript from alignment at sc0000007:716277..721749- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001180 ID=TCONS_00001180|Name=TCONS_00001180|organism=Clytia hemisphaerica|type=transcript|length=5473bp|location=Sequence derived from alignment at sc0000007:716277..721749- (Clytia hemisphaerica) CGCTTTGATTCATGCAAGGACAAAGGTAGTTGCCAAGTTTGCATGAAGGT
AAGTTTATTTTATATTCTCATTAAGGCTTTCCCCTCACGAACTGACATAT
TAAAGTTTTTTTCTGGAAAGTTCCATGTAGATAATTATGTAGAAGGATAT
AACATGTGTAATTTTCATACTCTGACTCATCAATATATCAGTAGTAGTGT
CTCCAATATTCTTTATCGGTTCTTTGAAGGTCTTACTTTGCCTTACGTTC
TACGTTTAATGCATTTAAACAGATTGTAAAAGATTTTGTTCTTGCAAAAA
CCCTAAATCCAAAAACCCCTCGTTGAGATTACTGTAAACAAAGTTTGGCC
AGAATTTCATCATAAATTGCTTTGTGAATAAACATTGTTTTTGAATGAAT
GGAATTTTAAAGAAAATTCTAGGGCCGTTGAAATTTATTTTAAATTTCGA
TCGAACAACTTCTTTAAGCTGTAACACAAACAAGAGTTTAAAGCCTACGC
ACGGAAACACGAAACAAAAACCTAACCAAACCAAACCTTGACGCCCCCAC
CCCATTTCCTTATGATGGTTTTATTACAATCTTTAACCATAATTAGCTGA
TTGTAATTTTCTTTTAACGTTGGGTCTTTAAATTACTATATCACTTTAAT
TTTGCAAAATGTACTTAATTAGCAGTTGCTAATTGTTTTGGTTGTTCTTA
CTATAAAAGACGAAGACAAACATTATACTTATTCAGATTTGAAGGATTAG
AGTGAAATTAATTAAGTTTGAAGCATTTTAGACGCCTTAAAATCTGTCTG
AAACTCTTTTCGTGCAAGATCAAGATTTCCGTTACGACAGACAGACATAT
GTCAGATTACTCAATATAGCGTTTCCGACATCTTTACTTTTTGTCAATGA
CAAATTCTGTTTTTGAATGATAAGGACTTGTCATGGCTATTGTGAAGCCT
TTGTTAAAATGTATGGAGTCATGTAGTGTTCTTTTTAGGTAAATTTAGAA
TAGCTTGTAGGAGTCTAGCCGCTTTCTCTGAAAATAAACTGGACTGGCTC
GTGTAGCCCACTCAACTAACAGAGTCGCTTTCAGGCTACATAGCAACTGA
ATAACCCTATCATTTCTTTTTGAAGACTCAATTCGAAGTTTCATAAAATT
GACAATGGCCAAGATCCGAAACTGAAATACTTACTGGGATGAAATTTATA
AGCCGTGCTCTCTCTCGAAAAAGTTGCATGGAACTGTATAGTAAGCTGAT
ATCAAATGTTTTAGATTTGACAGGCCTGCCCGACTTATTTTAGCTGTGTG
AATATTTATGAAATTCGAGAGGAGGTTTGAAAAGTGAGACGGGAAAACTT
GGTGGTCGATATCATACCACTATTTTAGATTTTACCATATTTGTCAAAAT
AAAAGAAACTGCTTACTTTTGTTGTTTGTAGTAGTATAGAATTTACAACA
TGAGACTTTCATCTGTTTATCATGCTCAGCTACACCTCCTTCATGTGGAG
TTGAACCTTTATATAGTTTTCTAATGGGGAGTGTATCAATCGAATTTCAT
TCCCTGCTATCTTTTGTCTAAACAACTCTGTTGGTAAGCTTTGTGCTGTG
CTGGAGTGTAGGATGGAAGAACGCGAAGGTTGTCCTTTCACCATTATCCT
TTCTCAAACCCCAAAAACAAAATATTTCATTTTATTTATCATCCTTTTTC
TTGGCAATACTTTGAAAGTTTATCAAACTCCGGAAAAGCCACTTTAAGCC
CTATCATCAAGAGCACCCATTGTATTTTATTGAGCAAGAATTTTTCTTTT
CAAGTATTCTTGTCTAAAGTTATGATGGTTTTTCCTAGATGACGTTTTTA
CAACTTCTCAAGCAACGTAATAGACGACGTAATACAACATTTTTGATTTC
TTTCCCATCATAATACAAGATCGTCGTGAATTCGATTATGTATTTAGTCC
ACATTCTTTCCCTAGCAAGAGCGAATAATTAAGATNTTCTTTTCCATCAT
AATACAAGATGGTCGTAAATTCGATTATGTATTTAGTCCACTTTCTTTCC
CTAGCAAGAGCGAATAATGAAGAATAATGATTATTTAGCAGTAATTTCTC
CTCAATTATTTTATGGATTATTATGTAATGTCGCAATATTAACTCTCACT
ACAATTCTCACAAAACCTTGACTTCCTGTCACAACAACCTTGTGTCTCCA
AATGTTTTATTTTTACAGCTTTTCCGAGATAAGGATTTAGCTGCTTTCCT
TTGAACCTGTATTGAACTCAGTTATTTGTTGTATTCAAGTATTCTTATCC
GAATTCGCTACAAATCCAGTGAGAAAATCACTGCTAAATATACTTTTTCT
CAAACAACTTAAAAGGTTGACCTTGCCTTGTTACTTTGACAGGTCTTTGC
ATGTTTTAGCCACCAGTTTTGAATGTTGTCAATAAAAGAAATGTCTTTGT
AGTTACCACAAACGACTTGTGATCGCCAACATCAATTTGAAAAACATGCT
CTATAGACGTTTGCGAATAATTAAATTGTTGGAAATGATTGATTGTTTAT
AAGTTTGAAGATTCTTTGTCGAACCGCAAAAGCCATTTTAATTAAAAACT
TCTGCTCCCGATGCCAAGAATTTTTCTGATGTTTAGAAAAGTCCAGAAAT
TTCATTGGTAGCATTATTCATTTAGTGATATGATATTCTTTGCAAATTCA
TCGCTGTTAGAAAAGTAGACGTAAAAAAGATTAGAGCATCGAAAGTGTCA
ATCTCAGCGATTTTGTTTTCTTTCCGGTCCTTGAATTATCACTATCTGCA
TTTTCTGTGATTTTGCTTTGTTTGCGCGAATTATTCTGCTTTAAGCCATA
GATTTTGCTTTGTTAAGTCACAGAATTGATTTAAGATTCTAGCAAGATTT
TTAAAACATTGATCCTAAGAATCCAAACTTGTTTTTTGTCTCTGTGATGT
CACTTTCCAAAGACGCGGTATATAAAGGAAGGAATATTTGATTCTAAGAA
ACGGATTTGATGATCCTTATTCTATGGAAAATTTCCAGAACAACAACTTG
AAATCTTTTTCTCTTGAGTTTTGTTTATGCATACAAAGCTTTACATAATA
ACAGAGTTGCATTTTTAGCTTGCAATGCCAACTCAGCATTAGATTCAACA
ATGTAGTAGGGTCGTTCTAAAATTGGCTGAGTTTTGCATTAGATAAAGTG
AACCCGCATTTTCTGATAATCTATCGCAGATAATCTTGATCAAAAGACTT
TTTTTCGATCAACTTAATTTTGTAAGCCTCTTTGTTGTATGGAAAGACAA
ATGAGTAAATGACGAATGTAATTTTCCGTCACTGTTACATCACAATCGTT
CGACCGCTAGACCAATATGGCGGTCAGAGCAGCGATTGTCGTAACTTGTA
GTACGTGAAAGGGTTGAGGAGAATGGAGTTTTTATTGACGTCTTTTCAAA
TGAAAAAGTAATGATATCAAAATGTTATGTTGTGAAAGTTTTATTAAGAA
AAAAAGTTTAGTCAAAAATAGCGCTTGGAACTGTGATTTGCGTAAATTTA
TCTTGAACTTTGTTAAGATTAAAGTTATATGTTTTGTGTCAAAAGTCATG
ACGCTTTTAAGCAGGGGACAAATTTGAAAATTATCGCTTTAAAGTTTCTG
TTGATGTTCACATTAACTTGATGCTTAAATCAACATAGCGAACAAGGTTA
TTTGCCGAATAGCAAAAAGCACGATCGGCTGTAGCTTTTTCACAGGACCC
TCACAAGAAACCAATAACAATAAAAATGTATTTGGCTTCATGGCGAAGCA
AGACAAAAAACATGTAATGTTGATCCATTGTCTTCGGAAAAAAAAGTAAT
TAAAACCCCCTTAATTTATCCTTCATCATTTCATAAGAGAATTTCCCCCG
TGTTTCGTTTCGATCGTCTTTTTTGATTGACAGCTCGCGATGTCAATTAA
GAATGATGTCATTTTGATGTGATGAGGGAATAAAGAGATTGTACGTATAT
AAAAACTGTGTTACAACAAGCTCCTCATTTTATTTACAAGGAAGCACAAG
TACAGAGAAGACGTGGTGAAAAATAACATTTATATAACCAAGTGAAAGTA
GAGAAGGAAAATTTTTGATCAACATGTACGATCATAAGAAGTTGAGCAAT
CAACTAGAAACTTTATCCAATAATAATATGAACGCAAAGAAACCCATTCG
AATTGTGGTTCTTGGACAGTGTGGTGTTGGGAAAACAGGTACGTTCAATT
CCTTACTTTTCTTCACATACTTGATTCTTTGTTTTTAAGTTCTCTATTAA
TGATTTACTTTTCATTCAGCTTCTTCGAGTTTTGTCAGATGATCTTATTT
TTATTTTTATTTTGTTCCTGCTTTGAAAATTGCTTGATTCAAGTACTGTA
TTATCTTTTGACTAGACCTTTCATGAGTGGAATTTCAATGGCAAGTCTTT
GGCCTTAGCTTTCATAAATTGGAGTACCCAGGTTTACAGACCTTTTTTGA
AATTGAATTTATTTTTCGTTCATTTTAGCATTGGTTTCGAGATGTTTACA
AAATACGTTTCCACAAGACTCTTCATCGGGTAAAGACATTTCACATCGAT
ACAACATGACAATCAATAAAAAGAAAACCGTTTGTCTCGATATTGTCGAT
TTCAACGATAAAAACGACGCACTTATCAGTTGTGCAGATGCTTTTATTAT
TTGTTACGCGATAAACGATCGAAAAAGTTTCGAAGCTATCGATGCTTATT
TGGACAAAATTGTCGAGGCTAATATAAAAAGTCCTAAAATTGGAATTGTT
GGAAATAAAATTGACTTGTATAATGATAGAGAGGTAGCGTCAACAGAAGG
ACTCGAACTAGCGAAAGAAATTAACAGTCTATTTTATGAAACGTCAGCTA
AAGTTCCCGTTATAGATGTGCGTCAAGTGTTTTATGATTTATATCAATCT
TTAAAGAACGCTAAACGATCCAAGAAAGGTAAAAGAGGAAGTATTGAACT
TGAATCTTCAGACGTTTTCAGTCTACTGAACTATTCCATTATTAATAATT
CGGGCGTCATTGGGCGGTCATCAAACAGCAGTTGTTTCTCAGCTTTACTT
AGCGCCCGAAGGAAAAAGTCGCCGCCACCATTATTTGGACGAAGCTGGTC
GTCAGAAAGTGTTTAATTGTTAATTGGTTGATTTTCTGATTTAAACGGTC
ATGTTTTGGCAATTGCTTAGCAGACTGACTGTCTATCAAAATAATTACAC
ATACATAACCTTCTAACCTTGATTTTGTTTTGATTTGTTCCAATTTGAGG
ATGGTTACCTAATATATCTTTTTTTGTTTTTGTTGATTTTTAAATTTAAA
AAAGAAATATAGAATTTTATTAACGGTTTATAAAAGACATTTAATTTTTT
GTGTAAATAACAGAGTTAATATTTATTTATCGGTATTTTATATATATATA
TTCACGAAGAAATAAAAAGACAT Coding sequence (CDS) from alignment at sc0000007:716277..721749- >TCONS_00001180 ID=TCONS_00001180|Name=TCONS_00001180|organism=Clytia hemisphaerica|type=CDS|length=1506bp|location=Sequence derived from alignment at sc0000007:716277..721749- (Clytia hemisphaerica) CATTGGTTTCGAGATGTTTACAAAATACGTTTCCACAAGACTCTTCATCG GGTAAAGACATTTCACATCGATACAACATGACAATCAATAAAAAGAAAAC CGTTTGTCTCGATATTGTCGATTTCAACGATAAAAACGACGCACTTATCA GTTGTGCAGATGCTTTTATTATTTGTTACGCGATAAACGATCGAAAAAGT TTCGAAGCTATCGATGCTTATTTGGACAAAATTGTCGAGGCTAATATAAA AAGTCCTAAAATTGGAATTGTTGGAAATAAAATTGACTTGTATAATGATA GAGAGGTAGCGTCAACAGAAGGACTCGAACTAGCGAAAGAAATTAACAGT CTATTTTATGAAACGTCAGCTAAAGTTCCCGTTATAGATGTGCGTCAAGT GTTTTATGATTTATATCAATCTTTAAAGAACGCTAAACGATCCAAGAAAG GTAAAAGAGGAAGTATTGAACTTGAATCTTCAGACGTTTTCAGTCTACTG AACTATTCCATTATTAATAATTCGGGCGTCATTGGGCGGTCATCAAACAG CAGTTGTTTCTCAGCTTTACTTAGCGCCCGAAGGAAAAAGTCGCCGCCAC CATTATTTGGACGAAGCTGGTCGTCAGAAAGTGTTTAAATGTACGATCAT AAGAAGTTGAGCAATCAACTAGAAACTTTATCCAATAATAATATGAACGC AAAGAAACCCATTCGAATTGTGGTTCTTGGACAGTGTGGTGTTGGGAAAA CAGCATTGGTTTCGAGATGTTTACAAAATACGTTTCCACAAGACTCTTCA TCGGGTAAAGACATTTCACATCGATACAACATGACAATCAATAAAAAGAA AACCGTTTGTCTCGATATTGTCGATTTCAACGATAAAAACGACGCACTTA TCAGTTGTGCAGATGCTTTTATTATTTGTTACGCGATAAACGATCGAAAA AGTTTCGAAGCTATCGATGCTTATTTGGACAAAATTGTCGAGGCTAATAT AAAAAGTCCTAAAATTGGAATTGTTGGAAATAAAATTGACTTGTATAATG ATAGAGAGGTAGCGTCAACAGAAGGACTCGAACTAGCGAAAGAAATTAAC AGTCTATTTTATGAAACGTCAGCTAAAGTTCCCGTTATAGATGTGCGTCA AGTGTTTTATGATTTATATCAATCTTTAAAGAACGCTAAACGATCCAAGA AAGGTAAAAGAGGAAGTATTGAACTTGAATCTTCAGACGTTTTCAGTCTA CTGAACTATTCCATTATTAATAATTCGGGCGTCATTGGGCGGTCATCAAA CAGCAGTTGTTTCTCAGCTTTACTTAGCGCCCGAAGGAAAAAGTCGCCGC CACCATTATTTGGACGAAGCTGGTCGTCAGAAAGTGTTTAAATGTACGAT CATAAGAAGTTGAGCAATCAACTAGAAACTTTATCCAATAATAATATGAA CGCAAAGAAACCCATTCGAATTGTGGTTCTTGGACAGTGTGGTGTTGGGA AAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001180-exon-sc0000007-1575043694:721702..721749 | TCONS_00001180-exon-sc0000007-1575043694:721702..721749 | Clytia hemisphaerica | exon |
TCONS_00001180-exon-sc0000007-1575043694:717512..717709 | TCONS_00001180-exon-sc0000007-1575043694:717512..717709 | Clytia hemisphaerica | exon |
TCONS_00001180-exon-sc0000007-1575043694:716277..717221 | TCONS_00001180-exon-sc0000007-1575043694:716277..717221 | Clytia hemisphaerica | exon |
TCONS_00001180-exon-sc0000007-1510915933:721702..721749 | TCONS_00001180-exon-sc0000007-1510915933:721702..721749 | Clytia hemisphaerica | exon |
TCONS_00001180-exon-sc0000007-1510915933:717512..717709 | TCONS_00001180-exon-sc0000007-1510915933:717512..717709 | Clytia hemisphaerica | exon |
TCONS_00001180-exon-sc0000007-1510915933:716277..717221 | TCONS_00001180-exon-sc0000007-1510915933:716277..717221 | Clytia hemisphaerica | exon |
TCONS_00001180-exon-sc0000007-1491911889:721702..721749 | TCONS_00001180-exon-sc0000007-1491911889:721702..721749 | Clytia hemisphaerica | exon |
TCONS_00001180-exon-sc0000007-1491911889:717512..717709 | TCONS_00001180-exon-sc0000007-1491911889:717512..717709 | Clytia hemisphaerica | exon |
TCONS_00001180-exon-sc0000007-1491911889:716277..717221 | TCONS_00001180-exon-sc0000007-1491911889:716277..717221 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000007 | supercontig | sc0000007:716277..721749 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005525 | GTP binding |
GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007165 |
signal transduction |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0003924 |
GTPase activity |
molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00001180 vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.885e-20 Identity = 57/180 (31.67%), Postives = 100/180 (55.56%), Query Frame = 3
Query: 186 MNAKKPIRIVVLGQCGVGKTALVSRCLQNTFPQDSSSGKDISHRYNMTINKKKTVCLDIVDFNDKNDAL-----ISCADAFIICYAINDRKSFEAIDAYLDKIVEANIKSPK---IGIVGNKIDLYNDREVASTEGLELAKEINSLFYETSAKVPVIDVRQVFYDLYQSLKNAKRSKKGK 701
M +++ + G+ GVGK+ALV R L F + + ++R+ TI+ + V ++I+D + D + + + F++ Y I DR SFE + L I++ IK PK + +VGNK DL + R+V++ EG +LA E+ FYE SA ++ ++FY+L + ++ +R +GK
Sbjct: 1 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE-VVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILD-EIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR-RRMVQGK 176
The following BLAST results are available for this feature:
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