TCONS_00001117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001117
Unique NameTCONS_00001117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001117 ID=TCONS_00001117|Name=TCONS_00001117|organism=Clytia hemisphaerica|type=transcript|length=3760bp
TACTGTCAATCCTTTCAAAAGATGACTTGATAATTTTTGACCTCTGTTTG
TCTGTACGTCGAGGTTTTATATTCTGTTTGGTTTTTCTATCAAAGATTGA
TGTGATAATAGTGTTTTGTTGTCagtgcaaaaattaatattGCTTTATGA
TGTCAACATAGTTGTGAAGATGATTCATGACTTTTCTCTGCTCAGAGGAT
ATTACAGAAAATTACTCTTCTATTGTTTGGATTATGTTAGTTCATTGACG
TTGTCATGAAGTTATTTTGCCAATGAACTCTGAATGTTATTTCTGCTTTA
GATTTAAAGTACACATGGAGTGTTTGTATAAGTTCGTGAACTCACCCTTA
TCAACATAGAGTGAATAATTGGTTCGTCGAAAACACTTTGCTACAAAAAC
ATATCATCGTTTGAGTATTAAAAGATTGCAACTGTCATTAAATCTGAAGG
CTGGTTCCATTTCTTATCTTGTTTTTGTTCTTTCATTTTAGCTTTGTAAA
TATCTTTCTAGACGCTCAACACAAAAACTGATAACATCATTATATTGAGT
GGTTATGTTGGACTTGTAGTGGCTTACTGTCAATTTCACTGGAAAATTAT
ATTAAAGACTTTTAACAGATAATACTTAGACATGAATTTGaactttttaa
caattttggtttGTTTGGCAGCCTGTAGCTATGGCATGGAGATAACGAAT
TGGGATCAAGTACGGAATAACCTGCATCGAAAATTAGAGGAGATTTATGA
GCGTGATcatgattttgttaaaaaaactgTTGAAGtaggaaaatatttca
aatacttTGTGACGTCACTGGATAGTGGAGAATATCAGGTTGTAGAAGAA
GGAAGCAACGCCCTACCAAGCTGGCTATCTTTTGATACCGAAAGAAATAA
ACTTCACGGAGTTCCCTTAGAAAAAGACATTCGAAAAGGACTACGTATTA
TATTCAAGCCGAAGAACAGGAACGAAGTTACCAGAAAACTCACTTTGACT
GTCACTAAAGGTAAAAATAATCACGGGTGCAAAGACGCTGCTACTACACT
CGCCTCAGTCATCTTTCACGCGAATATCGAGAAAATCACTGGGCATGATC
GAGTCAAATTTCTTAGGGAATTTTCACATCGTTTCGATGCAGCTATTGGT
GATTTGAAACTTGAATATGGAAACCGTATGGACGGCAATGAAATGTTGTC
TTCCAATCTCCGAATGGCCGGCCCTGGTGATCATCCACGAAAAATTGTTG
GAGAAGAACCCGGATTCACTGTTTCATGGAAGCTTGCATGTGGGTCTAAT
ATTGAAGGACACCAAGATGTGAGCGTGTTACGAACTTACACCCAACGCGA
AGATTTTTCTGACTTCCATTATCCCGTTTTGGGATGGTTTGTTACTTCCT
CAAGAACCAAACGCAACCGTCGTGCCCTTGGCGCTGGTGCTACACCCGGA
GCAACGCCCTCTATTCAAGGCACGCCAACAGTAATCCCATCAGCAAGTAT
TGATGTTAGACCTTCCGTTTCTTCCATTCAAATCACGCCCACCAAATCGT
TACCACCCATGATTCAAACGTCTGTTATTCCAACAACACAACCAGACACA
ACTGCCCCACcgacaacaaaagaagaaaCGACCGCCCCTACTACCACcac
aacgacaacgaccacgACCACCGAACCACCCACCACTCAACCGCCCACCA
CCATCCAACCAACTGTCAATCAAGCTCCTGAAGTTGTAGATGAACACAAA
TTTGGTGAGATAAAAGTGCAAGAACAGACACCAAAGATCTTTTCAGTTCC
TATTGGATTATTCAGAGATGATGATCCTTTGACCATTGACCTTCTCTACA
TGAACAAAGATGCCAGTTGGTCAACTAATGTTCCTTCATGGATCGCCTAC
AGAGAAGAACGAAAAATTTACCTTCTACCAGAATCCAAAGATGCCGGTTC
ACATGATTTCGCTTTGAAAGCCAAAGACGATAAAGGACTTTCAGCTGTTT
ACAACTTCAAAGTTATTGTCTCTAAAGACCAATTTGTGTACAACTTCAAG
TTTAACATGACCTTGGAAATTGAATTCGACTCCATTCAAAATGACCCCAT
CAAGAAAGTCGAAATCATTCATAAGATCGCTAAAGCTCTTGGATATTCTA
ATTTGAATCGTATCAAGAATGTCGAATTCAGAAAAGGATCTGTTGTTGTC
ATTTGGAGTGACGAACTCTTGAAAAATGCTTCTGACTGCAATAATGCTGA
GCTAGGTTCACTGGCACGAAGACTTGGTGATACTTCTAGTTTGAACGAAA
AGTTGCTTCCGTATACCATTTTGTCATCGGGAGTGACGTCAGTTTCGGAC
GAGTGTGAAATCGGATTGATACCCTTAGTGAACGATCCAGAAGAAGAGGA
GAGTTTGTGGCAACGCATCTTGATTCCCGTCATCGTCATCGTTATCATCC
TGCTCATCATCGCGCTCATTCTGTGCTGTGTTTACCGACGCAAGAAGAAG
TACGAAACGCAATCCGATAAAGATGAGTCTTACATGAATCAAAAGAAACC
CGTCATTTTCTTAGAAGAGTACGAAGAAAAACCAGACTTTGTTTCATTGA
AACCTTTGATTTTACCTAATGAAAAGCCACCAGTGCAAGGCTATGGACCT
CGCGATGGTTCGCCTGATGGGCCAGAATCGTCAACTGCACCATCCACCGA
GGATGACGAAAACGCGCCACTCGCTCCAAAATCTCCCAAAGAAACGCGCG
GCGGATACAACGCACCGCCACCATACTCCGCTCGTTAAGACATGGATAAG
GTTATGCATTCAGTGGCATTTGAACTATACTGGAAGTAGGGAGAGAAATG
TTGGTGGAAAGTGAGATGAGGAACGCCGCTCGCTTCGCTGCAATTCAAGG
ACAGGCAGCACTTTTCGAAGTGGGCTTTCGCGTTTTAGATAGGTTATTTA
AACAAATGGAGTTTTCATATATGAACATCAGTCGTCAACCATATTTATAT
TTTTCGTATGGAACTTCAAACAACAATTTTTAGTTCTTTTTTCGTTGGAA
TTTCGTGTTTATATTCGAATTTGATAAGCTTTTTTAATTctgttattttt
gtttgttcaattttttgttgagttttattttctttttcatactttGTTGT
TGACTCTtaagatttttttcgaaaattgggaaaatagtACCCAGTTCGTA
AGAAGGTTTTTTCTCTATACTGACTGCGACCGGAAAATATTCATCATCTT
TAATTGGGCTTTTACATGTTCAAATTCTGTTAGTTCCGGTGTTTTCACAT
CATGCCGGGCAGGGACAACACATCTCTCCTTCAAGGAGTGTTGCAATact
tttttcagtatttttaccAATTCTCTGATTTTTACTAAATACTTAATTTT
TCTATTAAATATCCAAATGTACAGTGTTTATTTTTGCATCACAGAAACCT
TTAGTTTATGAAACTGAAAAATAGTCAATTTTCCGCAGTGAATGTCATTA
GGTAGAGTATTCAAATAAGTTTGCTGTTTGCTCGAGTCAATTTTTTTCGT
TGTGAAATCAAGTCGAAAATTCTCAAATTCGAAACTAGAATGCCACGGCT
AAAAGAAACTTGACTTAAATTTGTGAATGGCAGACAATCATGGTTTGTca
gtaatttaatttttttaaagatagagTTTTAGATATAGTATCGGAATTCT
CTCTCAAAACATTTTGtatgttgaaaaaaaacaaatctaaaaaaaatgtt
gaaaacttAC
Run BLAST on NCBI

protein sequence of TCONS_00001117-protein

>TCONS_00001117-protein ID=TCONS_00001117-protein|Name=TCONS_00001117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=718bp
MNLNFLTILVCLAACSYGMEITNWDQVRNNLHRKLEEIYERDHDFVKKTV
EVGKYFKYFVTSLDSGEYQVVEEGSNALPSWLSFDTERNKLHGVPLEKDI
RKGLRIIFKPKNRNEVTRKLTLTVTKGKNNHGCKDAATTLASVIFHANIE
KITGHDRVKFLREFSHRFDAAIGDLKLEYGNRMDGNEMLSSNLRMAGPGD
HPRKIVGEEPGFTVSWKLACGSNIEGHQDVSVLRTYTQREDFSDFHYPVL
GWFVTSSRTKRNRRALGAGATPGATPSIQGTPTVIPSASIDVRPSVSSIQ
ITPTKSLPPMIQTSVIPTTQPDTTAPPTTKEETTAPTTTTTTTTTTTEPP
TTQPPTTIQPTVNQAPEVVDEHKFGEIKVQEQTPKIFSVPIGLFRDDDPL
TIDLLYMNKDASWSTNVPSWIAYREERKIYLLPESKDAGSHDFALKAKDD
KGLSAVYNFKVIVSKDQFVYNFKFNMTLEIEFDSIQNDPIKKVEIIHKIA
KALGYSNLNRIKNVEFRKGSVVVIWSDELLKNASDCNNAELGSLARRLGD
TSSLNEKLLPYTILSSGVTSVSDECEIGLIPLVNDPEEEESLWQRILIPV
IVIVIILLIIALILCCVYRRKKKYETQSDKDESYMNQKKPVIFLEEYEEK
PDFVSLKPLILPNEKPPVQGYGPRDGSPDGPESSTAPSTEDDENAPLAPK
SPKETRGGYNAPPPYSAR
Run BLAST on NCBI

transcript from alignment at sc0000007:424678..429838-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001117 ID=TCONS_00001117|Name=TCONS_00001117|organism=Clytia hemisphaerica|type=transcript|length=5161bp|location=Sequence derived from alignment at sc0000007:424678..429838- (Clytia hemisphaerica)
TACTGTCAATCCTTTCAAAAGATGACTTGATAATTTTTGACCTCTGTTTG TCTGTACGTCGAGGTTTTATATTCTGTTTGGTTTTTCTATCAAAGATTGA TGTGATAATAGTGTTTTGTTGTCAGTGCAAAAATTAATATTGCTTTATGA TGTCAACATAGTTGTGAAGATGATTCATGACTTTTCTCTGCTCAGAGGAT ATTACAGAAAATTACTCTTCTATTGTTTGGATTATGTTAGTTCATTGACG TTGTCATGAAGTTATTTTGCCAATGAACTCTGAATGTTATTTCTGCTTTA GATTTAAAGTACACATGGAGTGTTTGTATAAGTTCGTGAACTCACCCTTA TCAACATAGAGTGAATAATTGGTTCGTCGAAAACACTTTGCTACAAAAAC ATATCATCGTTTGAGTATTAAAAGATTGCAACTGTCATTAAATCTGAAGG CTGGTTCCATTTCTTATCTTGTTTTTGTTCTTTCATTTTAGCTTTGTAAA TATCTTTCTAGACGCTCAACACAAAAACTGATAACATCATTATATTGAGT GGTTATGTTGGACTTGTAGTGGCTTACTGTCAATTTCACTGGAAAATTAT ATTAAAGACTTTTAACAGATAATACTTAGACATGAATTTGAACTTTTTAA CAATTTTGGTTTGTTTGGCAGCCTGTAGCTATGGCATGGAGATAACGAAT TGGGATCAAGTACGGAATAACCTGCATCGAAAATTAGAGGAGATTTATGA GCGTGATCATGATTTTGTTAAAAAAACTGTTGAAGTAGGAAAATATTTCA AATACTTTGTGACGTCACTGGATAGTGGAGAATATCAGGTACGAACAAAC TTTCTTGTTCTTTTTTTTGCAAGTGAAGTAATTTACTATTCTTGAATAGA TATCCATTGAATGTTTAATGAAAATGAACCCAGTATGATCCCAAACGTTT CAATGTTATCTTTTCAATTATTGATGATCTTTCCTCATCAATGTTTGATA GATTCTTTCTTCTTTGCTTCATTAAAGCACTAAACAAAACTCTTTTCACT CAAAAGGAAATTCTCGGGCGAAAATCATTCAAAATTATTTGCTATCAGCA AGTAGAAATGGGCAAATACAGAAACTAATTGGGGAGAAAAAAAGAAATGA AATGAACAGTTCTTTTCAGAATCAAAATTTCATTATGTTGGTCCCATTTC CATATATTAGACCTAATTTTAATAATCATTTCATTTTGCCTCCTTCTGTT GGAGCTAATAAAAAATTCTTTAATTTCATTCTGAACAGTGAGGGAACTGT TTTTGTTTTGACTCCATTTTTTATATAAAAACGGCTTCTAAAGATAGAAA CACAAAATTGTTTGCCGAATTTGATCCTTTTCCCATTACATTTTATCATG ATTTAAAGAATCTGTTATTAGAGGCCGTCCCCTAATTGAAAATTGACCCT TCATGGCGCTAGCCTGTACATGTGAATTGAGAAATGAAGATATTCTATCA TTCTTTTTCTAACTTGTCAAATTTCTTCAAAAAAGAGATAATTTTGATCT ACGTTTTGCATTTCGAACTTCAAAACTTTCGGTGATGTTTACTAACAACC AGGCCTGCATTTCTGAAGGACCCTTCAAAACAGTGGATAGGTAGAACTTC TCACATAGCATTCAGTTTAGTCATCCAAAAGGAAAAAAAGATGGAGTGTT TTCTTTCAGTTCGAATTACAAGATGCGGTGAAAAAGTCACACAAAGATTT TGTTGCTTAACTTCTATTTTCTCTACAAACCTTTCCCTTGTGTAATCAAA CACCTTCTTTTTGTAAACCAACTTCTAATTCTTCTGTAAAATATTTACTC CGCTCTGAAATGTAAACGAGTAAAATGGAACCCCATAGCAGCCTTTAGAT TATGTTCCCGAGAGGAAGTATAATTGAGCAAATTTTGTTAGTCTGCGAAT ATAAAGGTCATGTCAAAGTAATTTATTTCCCCCCTTTTTTGTAGGTTGTA GAAGAAGGAAGCAACGCCCTACCAAGCTGGCTATCTTTTGATACCGAAAG AAATAAACTTCACGGAGTTCCCTTAGAAAAAGACATTCGAAAAGGACTAC GTATTATATTCAAGCCGAAGAACAGGAACGAAGTTACCAGAAAACTCACT TTGACTGTCACTAAAGGTAAAAATAATCACGGGTGCAAAGACGCTGCTAC TACACTCGCCTCAGTCATCTTTCACGCGAATATCGAGAAAATCACTGGGC ATGATCGAGTCAAATTTCTTAGGGAATTTTCACATCGTTTCGATGCAGCT ATTGGTGATTTGAAACTTGAATATGGAAACCGTATGGACGGCAATGAAAT GTTGTCTTCCAATCTCCGAATGGCCGGCCCTGGTGATCATCCACGAAAAA TTGTTGGAGAAGAACCCGGATTCACTGTTTCATGGAAGCTTGCATGTGGG TCTAATATTGAAGGTTTGTTGCTAGATGTTTTTAGTAGACGTCTCTTTGT TTTTGAAAGTGGAGAAAATATTCGAGCTTATCTTGACTTTTTTTATAAAG GGTTTGTACAGAAATGCTTAAGTGGCTTAAAAGCTGGTTTACCATAACTT AACGACTTGGCAATCCGCTTAAAGTCAGCTAAGACGTTCATCTGCTTTTA CACTTATGGGATGTAAAAAGTTAATCATTTCTCTTCTTTCTTTTCTTTTG ATACATAGGACACCAAGATGTGAGCGTGTTACGAACTTACACCCAACGCG AAGATTTTTCTGACTTCCATTATCCCGTTTTGGGATGGTTTGTTACTTCC TCAAGAACCAAACGCAACCGTCGTGCCCTTGGCGCTGGTGCTACACCCGG AGCAACGCCCTCTATTCAAGGCACGCCAACAGTAATCCCATCAGCAAGTA TTGATGTTAGACCTTCCGTTTCTTCCATTCAAATCACGCCCACCAAATCG TTACCACCCATGATTCAAACGTCTGTTATTCCAACAACACAACCAGACAC AACTGCCCCACCGACAACAAAAGAAGAAACGACCGCCCCTACTACCACCA CAACGACAACGACCACGACCACCGAACCACCCACCACTCAACCGCCCACC ACCATCCAACCAACTGTCAATCAAGCTCCTGAAGTTGTAGATGAACACAA ATTTGGTGAGATAAAAGTGCAAGAACAGACACCAAAGATCTTTTCAGTTC CTATTGGATTATTCAGAGATGATGATCCTTTGACCATTGACCTTCTCTAC ATGAACAAAGATGCCAGTTGGTCAACTAATGTTCCTTCATGGATCGCCTA CAGAGAAGAACGAAAAATTTACCTTCTACCAGAATCCAAAGATGCCGGTT CACATGATTTCGCTTTGAAAGCCAAAGACGATAAAGGACTTTCAGCTGTT TACAACTTCAAAGTTATTGTCTCTAAAGACCAATTTGTGTACAACTTCAA GTTTAACATGACCTTGGAAATTGAATTCGACTCCATTCAAAATGACCCCA TCAAGAAAGTCGAAATCATTCATAAGATCGCTAAAGCTCTTGGATATTCT AATTTGAATCGTATCAAGAATGTCGAATTCAGAAAAGGATCTGTTGTTGT CATTTGGAGTGACGAACTCTTGAAAAATGCTTCTGACTGCAATAATGCTG AGCTAGGTTCACTGGCACGAAGACTTGGTGATACTTCTAGTTTGAACGAA AAGTTGCTTCCGTATACCATTTTGTCATCGGGAGTGACGTCAGTTTCGGA CGAGTGTGAAATCGGATTGATACCCTTAGTGAACGATCCAGAAGAAGAGG AGAGTTTGTGGCAACGCATCTTGATTCCCGTCATCGTCATCGTTATCATC CTGCTCATCATCGCGCTCATTCTGTGCTGTGTTTACCGACGCAAGAAGAA GTACGAAACGCAATCCGATAAAGATGAGTCTTACATGAATCAAAAGAAAC CCGTCATTTTCTTAGAAGAGTACGAAGAAAAACCAGACTTTGTTTCATTG AAACCTTTGATTTTACCTAATGAAAAGCCACCAGTGCAAGGCTATGGACC TCGCGATGGTTCGCCTGATGGGCCAGAATCGTCAACTGCACCATCCACCG AGGATGACGAAAACGCGCCACTCGCTCCAAAATCTCCCAAAGAAACGCGC GGCGGATACAACGCACCGCCACCATACTCCGCTCGTTAAGACATGGATAA GGTTATGCATTCAGTGGCATTTGAACTATACTGGAAGTAGGGAGAGAAAT GTTGGTGGAAAGTGAGATGAGGAACGCCGCTCGCTTCGCTGCAATTCAAG GACAGGCAGCACTTTTCGAAGTGGGCTTTCGCGTTTTAGATAGGTTATTT AAACAAATGGAGTTTTCATATATGAACATCAGTCGTCAACCATATTTATA TTTTTCGTATGGAACTTCAAACAACAATTTTTAGTTCTTTTTTCGTTGGA ATTTCGTGTTTATATTCGAATTTGATAAGCTTTTTTAATTCTGTTATTTT TGTTTGTTCAATTTTTTGTTGAGTTTTATTTTCTTTTTCATACTTTGTTG TTGACTCTTAAGATTTTTTTCGAAAATTGGGAAAATAGTACCCAGTTCGT AAGAAGGTTTTTTCTCTATACTGACTGCGACCGGAAAATATTCATCATCT TTAATTGGGCTTTTACATGTTCAAATTCTGTTAGTTCCGGTGTTTTCACA TCATGCCGGGCAGGGACAACACATCTCTCCTTCAAGGAGTGTTGCAATAC TTTTTTCAGTATTTTTACCAATTCTCTGATTTTTACTAAATACTTAATTT TTCTATTAAATATCCAAATGTACAGTGTTTATTTTTGCATCACAGAAACC TTTAGTTTATGAAACTGAAAAATAGTCAATTTTCCGCAGTGAATGTCATT AGGTAGAGTATTCAAATAAGTTTGCTGTTTGCTCGAGTCAATTTTTTTCG TTGTGAAATCAAGTCGAAAATTCTCAAATTCGAAACTAGAATGCCACGGC TAAAAGAAACTTGACTTAAATTTGTGAATGGCAGACAATCATGGTTTGTC AGTAATTTAATTTTTTTAAAGATAGAGTTTTAGATATAGTATCGGAATTC TCTCTCAAAACATTTTGTATGTTGAAAAAAAACAAATCTAAAAAAAATGT TGAAAACTTAC

Coding sequence (CDS) from alignment at sc0000007:424678..429838-

>TCONS_00001117 ID=TCONS_00001117|Name=TCONS_00001117|organism=Clytia hemisphaerica|type=CDS|length=6471bp|location=Sequence derived from alignment at sc0000007:424678..429838- (Clytia hemisphaerica)
GACACCAAGATGTGAGCGTGTTACGAACTTACACCCAACGCGAAGATTTT
TCTGACTTCCATTATCCCGTTTTGGGATGGTTTGTTACTTCCTCAAGAAC
CAAACGCAACCGTCGTGCCCTTGGCGCTGGTGCTACACCCGGAGCAACGC
CCTCTATTCAAGGCACGCCAACAGTAATCCCATCAGCAAGTATTGATGTT
AGACCTTCCGTTTCTTCCATTCAAATCACGCCCACCAAATCGTTACCACC
CATGATTCAAACGTCTGTTATTCCAACAACACAACCAGACACAACTGCCC
CACCGACAACAAAAGAAGAAACGACCGCCCCTACTACCACCACAACGACA
ACGACCACGACCACCGAACCACCCACCACTCAACCGCCCACCACCATCCA
ACCAACTGTCAATCAAGCTCCTGAAGTTGTAGATGAACACAAATTTGGTG
AGATAAAAGTGCAAGAACAGACACCAAAGATCTTTTCAGTTCCTATTGGA
TTATTCAGAGATGATGATCCTTTGACCATTGACCTTCTCTACATGAACAA
AGATGCCAGTTGGTCAACTAATGTTCCTTCATGGATCGCCTACAGAGAAG
AACGAAAAATTTACCTTCTACCAGAATCCAAAGATGCCGGTTCACATGAT
TTCGCTTTGAAAGCCAAAGACGATAAAGGACTTTCAGCTGTTTACAACTT
CAAAGTTATTGTCTCTAAAGACCAATTTGTGTACAACTTCAAGTTTAACA
TGACCTTGGAAATTGAATTCGACTCCATTCAAAATGACCCCATCAAGAAA
GTCGAAATCATTCATAAGATCGCTAAAGCTCTTGGATATTCTAATTTGAA
TCGTATCAAGAATGTCGAATTCAGAAAAGGATCTGTTGTTGTCATTTGGA
GTGACGAACTCTTGAAAAATGCTTCTGACTGCAATAATGCTGAGCTAGGT
TCACTGGCACGAAGACTTGGTGATACTTCTAGTTTGAACGAAAAGTTGCT
TCCGTATACCATTTTGTCATCGGGAGTGACGTCAGTTTCGGACGAGTGTG
AAATCGGATTGATACCCTTAGTGAACGATCCAGAAGAAGAGGAGAGTTTG
TGGCAACGCATCTTGATTCCCGTCATCGTCATCGTTATCATCCTGCTCAT
CATCGCGCTCATTCTGTGCTGTGTTTACCGACGCAAGAAGAAGTACGAAA
CGCAATCCGATAAAGATGAGTCTTACATGAATCAAAAGAAACCCGTCATT
TTCTTAGAAGAGTACGAAGAAAAACCAGACTTTGTTTCATTGAAACCTTT
GATTTTACCTAATGAAAAGCCACCAGTGCAAGGCTATGGACCTCGCGATG
GTTCGCCTGATGGGCCAGAATCGTCAACTGCACCATCCACCGAGGATGAC
GAAAACGCGCCACTCGCTCCAAAATCTCCCAAAGAAACGCGCGGCGGATA
CAACGCACCGCCACCATACTCCGCTCGTTAAGTTGTAGAAGAAGGAAGCA
ACGCCCTACCAAGCTGGCTATCTTTTGATACCGAAAGAAATAAACTTCAC
GGAGTTCCCTTAGAAAAAGACATTCGAAAAGGACTACGTATTATATTCAA
GCCGAAGAACAGGAACGAAGTTACCAGAAAACTCACTTTGACTGTCACTA
AAGGTAAAAATAATCACGGGTGCAAAGACGCTGCTACTACACTCGCCTCA
GTCATCTTTCACGCGAATATCGAGAAAATCACTGGGCATGATCGAGTCAA
ATTTCTTAGGGAATTTTCACATCGTTTCGATGCAGCTATTGGTGATTTGA
AACTTGAATATGGAAACCGTATGGACGGCAATGAAATGTTGTCTTCCAAT
CTCCGAATGGCCGGCCCTGGTGATCATCCACGAAAAATTGTTGGAGAAGA
ACCCGGATTCACTGTTTCATGGAAGCTTGCATGTGGGTCTAATATTGAAG
ATGAATTTGAACTTTTTAACAATTTTGGTTTGTTTGGCAGCCTGTAGCTA
TGGCATGGAGATAACGAATTGGGATCAAGTACGGAATAACCTGCATCGAA
AATTAGAGGAGATTTATGAGCGTGATCATGATTTTGTTAAAAAAACTGTT
GAAGTAGGAAAATATTTCAAATACTTTGTGACGTCACTGGATAGTGGAGA
ATATCAGGACACCAAGATGTGAGCGTGTTACGAACTTACACCCAACGCGA
AGATTTTTCTGACTTCCATTATCCCGTTTTGGGATGGTTTGTTACTTCCT
CAAGAACCAAACGCAACCGTCGTGCCCTTGGCGCTGGTGCTACACCCGGA
GCAACGCCCTCTATTCAAGGCACGCCAACAGTAATCCCATCAGCAAGTAT
TGATGTTAGACCTTCCGTTTCTTCCATTCAAATCACGCCCACCAAATCGT
TACCACCCATGATTCAAACGTCTGTTATTCCAACAACACAACCAGACACA
ACTGCCCCACCGACAACAAAAGAAGAAACGACCGCCCCTACTACCACCAC
AACGACAACGACCACGACCACCGAACCACCCACCACTCAACCGCCCACCA
CCATCCAACCAACTGTCAATCAAGCTCCTGAAGTTGTAGATGAACACAAA
TTTGGTGAGATAAAAGTGCAAGAACAGACACCAAAGATCTTTTCAGTTCC
TATTGGATTATTCAGAGATGATGATCCTTTGACCATTGACCTTCTCTACA
TGAACAAAGATGCCAGTTGGTCAACTAATGTTCCTTCATGGATCGCCTAC
AGAGAAGAACGAAAAATTTACCTTCTACCAGAATCCAAAGATGCCGGTTC
ACATGATTTCGCTTTGAAAGCCAAAGACGATAAAGGACTTTCAGCTGTTT
ACAACTTCAAAGTTATTGTCTCTAAAGACCAATTTGTGTACAACTTCAAG
TTTAACATGACCTTGGAAATTGAATTCGACTCCATTCAAAATGACCCCAT
CAAGAAAGTCGAAATCATTCATAAGATCGCTAAAGCTCTTGGATATTCTA
ATTTGAATCGTATCAAGAATGTCGAATTCAGAAAAGGATCTGTTGTTGTC
ATTTGGAGTGACGAACTCTTGAAAAATGCTTCTGACTGCAATAATGCTGA
GCTAGGTTCACTGGCACGAAGACTTGGTGATACTTCTAGTTTGAACGAAA
AGTTGCTTCCGTATACCATTTTGTCATCGGGAGTGACGTCAGTTTCGGAC
GAGTGTGAAATCGGATTGATACCCTTAGTGAACGATCCAGAAGAAGAGGA
GAGTTTGTGGCAACGCATCTTGATTCCCGTCATCGTCATCGTTATCATCC
TGCTCATCATCGCGCTCATTCTGTGCTGTGTTTACCGACGCAAGAAGAAG
TACGAAACGCAATCCGATAAAGATGAGTCTTACATGAATCAAAAGAAACC
CGTCATTTTCTTAGAAGAGTACGAAGAAAAACCAGACTTTGTTTCATTGA
AACCTTTGATTTTACCTAATGAAAAGCCACCAGTGCAAGGCTATGGACCT
CGCGATGGTTCGCCTGATGGGCCAGAATCGTCAACTGCACCATCCACCGA
GGATGACGAAAACGCGCCACTCGCTCCAAAATCTCCCAAAGAAACGCGCG
GCGGATACAACGCACCGCCACCATACTCCGCTCGTTAAGTTGTAGAAGAA
GGAAGCAACGCCCTACCAAGCTGGCTATCTTTTGATACCGAAAGAAATAA
ACTTCACGGAGTTCCCTTAGAAAAAGACATTCGAAAAGGACTACGTATTA
TATTCAAGCCGAAGAACAGGAACGAAGTTACCAGAAAACTCACTTTGACT
GTCACTAAAGGTAAAAATAATCACGGGTGCAAAGACGCTGCTACTACACT
CGCCTCAGTCATCTTTCACGCGAATATCGAGAAAATCACTGGGCATGATC
GAGTCAAATTTCTTAGGGAATTTTCACATCGTTTCGATGCAGCTATTGGT
GATTTGAAACTTGAATATGGAAACCGTATGGACGGCAATGAAATGTTGTC
TTCCAATCTCCGAATGGCCGGCCCTGGTGATCATCCACGAAAAATTGTTG
GAGAAGAACCCGGATTCACTGTTTCATGGAAGCTTGCATGTGGGTCTAAT
ATTGAAGATGAATTTGAACTTTTTAACAATTTTGGTTTGTTTGGCAGCCT
GTAGCTATGGCATGGAGATAACGAATTGGGATCAAGTACGGAATAACCTG
CATCGAAAATTAGAGGAGATTTATGAGCGTGATCATGATTTTGTTAAAAA
AACTGTTGAAGTAGGAAAATATTTCAAATACTTTGTGACGTCACTGGATA
GTGGAGAATATCAGGACACCAAGATGTGAGCGTGTTACGAACTTACACCC
AACGCGAAGATTTTTCTGACTTCCATTATCCCGTTTTGGGATGGTTTGTT
ACTTCCTCAAGAACCAAACGCAACCGTCGTGCCCTTGGCGCTGGTGCTAC
ACCCGGAGCAACGCCCTCTATTCAAGGCACGCCAACAGTAATCCCATCAG
CAAGTATTGATGTTAGACCTTCCGTTTCTTCCATTCAAATCACGCCCACC
AAATCGTTACCACCCATGATTCAAACGTCTGTTATTCCAACAACACAACC
AGACACAACTGCCCCACCGACAACAAAAGAAGAAACGACCGCCCCTACTA
CCACCACAACGACAACGACCACGACCACCGAACCACCCACCACTCAACCG
CCCACCACCATCCAACCAACTGTCAATCAAGCTCCTGAAGTTGTAGATGA
ACACAAATTTGGTGAGATAAAAGTGCAAGAACAGACACCAAAGATCTTTT
CAGTTCCTATTGGATTATTCAGAGATGATGATCCTTTGACCATTGACCTT
CTCTACATGAACAAAGATGCCAGTTGGTCAACTAATGTTCCTTCATGGAT
CGCCTACAGAGAAGAACGAAAAATTTACCTTCTACCAGAATCCAAAGATG
CCGGTTCACATGATTTCGCTTTGAAAGCCAAAGACGATAAAGGACTTTCA
GCTGTTTACAACTTCAAAGTTATTGTCTCTAAAGACCAATTTGTGTACAA
CTTCAAGTTTAACATGACCTTGGAAATTGAATTCGACTCCATTCAAAATG
ACCCCATCAAGAAAGTCGAAATCATTCATAAGATCGCTAAAGCTCTTGGA
TATTCTAATTTGAATCGTATCAAGAATGTCGAATTCAGAAAAGGATCTGT
TGTTGTCATTTGGAGTGACGAACTCTTGAAAAATGCTTCTGACTGCAATA
ATGCTGAGCTAGGTTCACTGGCACGAAGACTTGGTGATACTTCTAGTTTG
AACGAAAAGTTGCTTCCGTATACCATTTTGTCATCGGGAGTGACGTCAGT
TTCGGACGAGTGTGAAATCGGATTGATACCCTTAGTGAACGATCCAGAAG
AAGAGGAGAGTTTGTGGCAACGCATCTTGATTCCCGTCATCGTCATCGTT
ATCATCCTGCTCATCATCGCGCTCATTCTGTGCTGTGTTTACCGACGCAA
GAAGAAGTACGAAACGCAATCCGATAAAGATGAGTCTTACATGAATCAAA
AGAAACCCGTCATTTTCTTAGAAGAGTACGAAGAAAAACCAGACTTTGTT
TCATTGAAACCTTTGATTTTACCTAATGAAAAGCCACCAGTGCAAGGCTA
TGGACCTCGCGATGGTTCGCCTGATGGGCCAGAATCGTCAACTGCACCAT
CCACCGAGGATGACGAAAACGCGCCACTCGCTCCAAAATCTCCCAAAGAA
ACGCGCGGCGGATACAACGCACCGCCACCATACTCCGCTCGTTAAGTTGT
AGAAGAAGGAAGCAACGCCCTACCAAGCTGGCTATCTTTTGATACCGAAA
GAAATAAACTTCACGGAGTTCCCTTAGAAAAAGACATTCGAAAAGGACTA
CGTATTATATTCAAGCCGAAGAACAGGAACGAAGTTACCAGAAAACTCAC
TTTGACTGTCACTAAAGGTAAAAATAATCACGGGTGCAAAGACGCTGCTA
CTACACTCGCCTCAGTCATCTTTCACGCGAATATCGAGAAAATCACTGGG
CATGATCGAGTCAAATTTCTTAGGGAATTTTCACATCGTTTCGATGCAGC
TATTGGTGATTTGAAACTTGAATATGGAAACCGTATGGACGGCAATGAAA
TGTTGTCTTCCAATCTCCGAATGGCCGGCCCTGGTGATCATCCACGAAAA
ATTGTTGGAGAAGAACCCGGATTCACTGTTTCATGGAAGCTTGCATGTGG
GTCTAATATTGAAGATGAATTTGAACTTTTTAACAATTTTGGTTTGTTTG
GCAGCCTGTAGCTATGGCATGGAGATAACGAATTGGGATCAAGTACGGAA
TAACCTGCATCGAAAATTAGAGGAGATTTATGAGCGTGATCATGATTTTG
TTAAAAAAACTGTTGAAGTAGGAAAATATTTCAAATACTTTGTGACGTCA
CTGGATAGTGGAGAATATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000628XLOC_000628Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001117-proteinTCONS_00001117-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001117-exon-sc0000007-1575043694:429001..429838TCONS_00001117-exon-sc0000007-1575043694:429001..429838Clytia hemisphaericaexon
TCONS_00001117-exon-sc0000007-1575043694:427376..427844TCONS_00001117-exon-sc0000007-1575043694:427376..427844Clytia hemisphaericaexon
TCONS_00001117-exon-sc0000007-1575043694:424678..427130TCONS_00001117-exon-sc0000007-1575043694:424678..427130Clytia hemisphaericaexon
TCONS_00001117-exon-sc0000007-1510915933:429001..429838TCONS_00001117-exon-sc0000007-1510915933:429001..429838Clytia hemisphaericaexon
TCONS_00001117-exon-sc0000007-1510915933:427376..427844TCONS_00001117-exon-sc0000007-1510915933:427376..427844Clytia hemisphaericaexon
TCONS_00001117-exon-sc0000007-1510915933:424678..427130TCONS_00001117-exon-sc0000007-1510915933:424678..427130Clytia hemisphaericaexon
TCONS_00001117-exon-sc0000007-1491911889:429001..429838TCONS_00001117-exon-sc0000007-1491911889:429001..429838Clytia hemisphaericaexon
TCONS_00001117-exon-sc0000007-1491911889:427376..427844TCONS_00001117-exon-sc0000007-1491911889:427376..427844Clytia hemisphaericaexon
TCONS_00001117-exon-sc0000007-1491911889:424678..427130TCONS_00001117-exon-sc0000007-1491911889:424678..427130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:424678..429838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.2607 28.702 9.94345 7.11624 137.185 105.009 66.4467 74.8932 26.4025 59.411 26.0038 13.6139 61.5493 55.6114 33.1654 33.3024 80.589 92.418 63.0862 81.4075 84.2913 88.3162 39.6242 53.9685 59.0832 71.7911 101.76 87.7084 124.154 128.651
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027468Alpha-dystroglycan_domain_2
IPR008465DAG1
IPR030398SEA_DG_dom
IPR015919Cadherin-like
Vocabulary: Cellular Component
TermDefinition
GO:0016010dystrophin-associated glycoprotein complex
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007016cytoskeletal anchoring at plasma membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007016 cytoskeletal anchoring at plasma membrane
cellular_component GO:0016010 dystrophin-associated glycoprotein complex
cellular_component GO:0016020 membrane
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top