TCONS_00001117-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001117-protein
Unique Name	TCONS_00001117-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	718

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001117-protein ID=TCONS_00001117-protein|Name=TCONS_00001117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=718bp
MNLNFLTILVCLAACSYGMEITNWDQVRNNLHRKLEEIYERDHDFVKKTV
EVGKYFKYFVTSLDSGEYQVVEEGSNALPSWLSFDTERNKLHGVPLEKDI
RKGLRIIFKPKNRNEVTRKLTLTVTKGKNNHGCKDAATTLASVIFHANIE
KITGHDRVKFLREFSHRFDAAIGDLKLEYGNRMDGNEMLSSNLRMAGPGD
HPRKIVGEEPGFTVSWKLACGSNIEGHQDVSVLRTYTQREDFSDFHYPVL
GWFVTSSRTKRNRRALGAGATPGATPSIQGTPTVIPSASIDVRPSVSSIQ
ITPTKSLPPMIQTSVIPTTQPDTTAPPTTKEETTAPTTTTTTTTTTTEPP
TTQPPTTIQPTVNQAPEVVDEHKFGEIKVQEQTPKIFSVPIGLFRDDDPL
TIDLLYMNKDASWSTNVPSWIAYREERKIYLLPESKDAGSHDFALKAKDD
KGLSAVYNFKVIVSKDQFVYNFKFNMTLEIEFDSIQNDPIKKVEIIHKIA
KALGYSNLNRIKNVEFRKGSVVVIWSDELLKNASDCNNAELGSLARRLGD
TSSLNEKLLPYTILSSGVTSVSDECEIGLIPLVNDPEEEESLWQRILIPV
IVIVIILLIIALILCCVYRRKKKYETQSDKDESYMNQKKPVIFLEEYEEK
PDFVSLKPLILPNEKPPVQGYGPRDGSPDGPESSTAPSTEDDENAPLAPK
SPKETRGGYNAPPPYSAR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000628	XLOC_000628	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001117	TCONS_00001117	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027468	Alpha-dystroglycan_domain_2
IPR008465	DAG1
IPR030398	SEA_DG_dom
IPR015919	Cadherin-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016010	dystrophin-associated glycoprotein complex
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007016	cytoskeletal anchoring at plasma membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007016	cytoskeletal anchoring at plasma membrane
cellular_component	GO:0016010	dystrophin-associated glycoprotein complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0005509	calcium ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027468	Alpha-dystroglycan domain 2	GENE3D	3.30.70.1040		coord: 133..256 e-value: 1.5E-14 score: 53.9
IPR027468	Alpha-dystroglycan domain 2	SUPERFAMILY	111006	Dystroglycan, domain 2	coord: 135..257
IPR008465	Dystroglycan	PFAM	PF05454	DAG1	coord: 594..716 e-value: 1.3E-14 score: 54.2 coord: 472..551 e-value: 1.0E-5 score: 25.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 309..360
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 660..718
IPR030398	DG-type SEA domain	PROSITE	PS51699	SEA_DG	coord: 469..574 score: 18.159
IPR015919	Cadherin-like	SUPERFAMILY	49313	Cadherin-like	coord: 49..125
IPR015919	Cadherin-like	SUPERFAMILY	49313	Cadherin-like	coord: 377..465

Blast

[Close]

BLAST of TCONS_00001117-protein vs. Swiss-Prot (Human)
Match: DAG1 (Dystroglycan OS=Homo sapiens GN=DAG1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.816e-22
Identity = 102/372 (27.42%), Postives = 166/372 (44.62%), Query Frame = 0

Query:  336 PTTTTTTTTTTTEPPTTQPPTTIQPTVNQAPEVVDEHKFGEIK-----VQEQTPKIFSV--PIGLFRDDDPLTIDLLYMNKDASWSTNV--PSWIAYREERKI-YLLPESKDAGSHDFALKAKDDKGLSAVYNFKVIVSK----DQFVYNFKFNMTLEIEFDSIQNDPIKKVEIIHKIAKALGYSNLNRIKNVEFRKGSVVVIWSDELLKNASDCNNAELGSLARRLGDTS-----SLNEKLLPYTILSSGVTSVSDEC-EIGLIPLV----------------NDPEE--EESLWQRILIPVIVIVIILLIIALILCCVYRRKKKYETQSDKDESYMNQKKPVIFLEEYEE-KPDFVSLKPLILPNEKPPV 668
            P  TT  + T  E  T  PPT I+ T +  P   + ++  E+K     V       F V  P   F D +  T D L +         V   SW+ +    ++ Y LP+S   G H++ + A D  GLSAV  F++ V +    D+    FK     +     + ND  KK+ ++ K+A A G  N + I      +GS+VV W++  L     C   ++  L+RR+ +       + +  L P    +S   + S  C  +  IP+V                 DPE+  E+ ++   +IP +V+  ILLI  +I    YR+K+K +   +   +++ +  P+IF +E ++ KP   S  PLIL  EK P+
Sbjct:  460 PRVTTKVSITRLE--TASPPTRIRTTTSGVPRGGEPNQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDHEDTTTDKLKLTLKLREQQLVGEKSWVQFNSNSQLMYGLPDSSHVGKHEYFMHATDKGGLSAVDAFEIHVHRRPQGDRAPARFKAKFVGDPAL--VLNDIHKKIALVKKLAFAFGDRNCSTITLQNITRGSIVVEWTNNTLP-LEPCPKEQIAGLSRRIAEDDGKPRPAFSNALEPDFKATSITVTGSGSCRHLQFIPVVPPRRVPSEAPPTEVPDRDPEKSSEDDVYLHTVIPAVVVAAILLIAGIIAMICYRKKRKGKLTLEDQATFIKKGVPIIFADELDDSKPPPSSSMPLILQEEKAPL 826

HSP 2 Score: 95.5153 bits (236), Expect = 3.584e-20
Identity = 102/401 (25.44%), Postives = 171/401 (42.64%), Query Frame = 0

Query:    4 NFLTILVCLAACSY-----GMEITNWD-QVRNNLHRKLEEIYERDHDFV---KKTVEVGKYFKYFVTS---LDSGEY-QVVEEGSNALPSWLSFDTERNKLHGVPLEKDIRKGLRII------------------------FKPKNRNEVTRKLTLTVTKGK--NNHGCKDAATTLASVIFHANIEKITGHDRVKFLREFSHRFDAAIGDLKLEYGNRMDGNEMLSSNLRMAGPGDHPRKIVGEEPGFTVSWKLACGSNIEGHQDVSVLRTYTQREDFS-DFHYPVLGWFVTSSR---TKRNRRALGAGATPGATPSIQGTPTVIPSASIDVRPSVSSIQITPTKSLPPMIQTSVIPTTQPDTTAPPTTKEETTAPTTTTTTTTTTTEPPTTQPPTTIQPT 361
             FL +L  + A S+        + +W+ Q+  ++H  L +++E     V     T  VG+ F+  + +     SG+  +V   G  ALPSWL +D++ + L G+PL+ D  KG+  I                          P++ +E+    T +   G+  ++    D   T+ +VI  A++ K+T   R+  L       +  + ++KL     +  N +   +  MAGPG+  +K+V  E G  +SWKL C  N     D+  +    +    S    YPV+GW + + +    KR RR             I  TPT + +    + P  ++IQ  P++ +P     ++ P T+  T APP        PT T  T     + PT  P   IQPT
Sbjct:   17 TFLLLLSVVMAQSHWPSEPSEAVRDWENQLEASMHSVLSDLHEAVPTVVGIPDGTAVVGRSFRVTIPTDLIASSGDIIKVSAAGKEALPSWLHWDSQSHTLEGLPLDTD--KGVHYISVSATRLGANGSHIPQTSSVFSIEVYPEDHSELQSVRTASPDPGEVVSSACAADEPVTVLTVILDADLTKMTPKQRIDLLHRMRSFSEVELHNMKLV---PVVNNRLFDMSAFMAGPGNA-KKVV--ENGALLSWKLGCSLNQNSVPDIHGVEAPAREGAMSAQLGYPVVGWHIANKKPPLPKRVRR------------QIHATPTPVTA----IGPPTTAIQEPPSRIVPTPTSPAIAPPTE--TMAPPVRDPVPGKPTVTIRTRGAIIQTPTLGP---IQPT 388

The following BLAST results are available for this feature:

BLAST of TCONS_00001117-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001117-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DAG1	9.816e-22	27.42	Dystroglycan OS=Homo sapiens GN=DAG1 PE=1 SV=2	[more]

You are here

TCONS_00001117-protein (polypeptide) - C. hemisphaerica